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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913805
Clone id YMU001_000035_E05
Library
Length 240
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000035_E05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ATTGGGAATCACCGCCCTCATCCTCTACTTGGTGCTGCAGCCCAAAGCGCCCGATTTCTC
CGTCTCAGACGCCACCATCACCTCCTTCAATCTCTCCTCGCAGCCTCTCTCTGCTTCAAA
TGCCATCGCCGACGCCAATCTGTACCACAACGCAGACGTTACCTTCAACGTGAGCGCGCA
AAATCCAAACAAGAAAATTGGCATCTACTATGATGCAGTGGATGTGACGCTCTTCTACGA
■■Homology search results ■■ -
sp_hit_id Q9C615
Definition sp|Q9C615|SYP24_ARATH Putative syntaxin-24 OS=Arabidopsis thaliana
Align length 61
Score (bit) 34.7
E-value 0.15
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913805|Adiantum capillus-veneris mRNA, clone:
YMU001_000035_E05.
         (240 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9C615|SYP24_ARATH Putative syntaxin-24 OS=Arabidopsis thalia...    35   0.15 
sp|Q8CDG5|CE041_MOUSE UPF0474 protein C5orf41 homolog OS=Mus mus...    30   3.8  
sp|Q8IUR6|CE041_HUMAN UPF0474 protein C5orf41 OS=Homo sapiens GN...    30   3.8  
sp|Q4UMT7|FTSZ_RICFE Cell division protein ftsZ OS=Rickettsia fe...    29   8.4  
sp|Q92GV7|FTSZ_RICCN Cell division protein ftsZ OS=Rickettsia co...    29   8.4  
sp|P58329|ATZD_PSESD Cyanuric acid amidohydrolase OS=Pseudomonas...    29   8.4  
sp|Q7YS78|ARRC_PIG Arrestin-C OS=Sus scrofa GN=ARR3 PE=2 SV=2          29   8.4  

>sp|Q9C615|SYP24_ARATH Putative syntaxin-24 OS=Arabidopsis thaliana
           GN=SYP24 PE=3 SV=1
          Length = 416

 Score = 34.7 bits (78), Expect = 0.15
 Identities = 20/61 (32%), Positives = 33/61 (54%)
 Frame = +2

Query: 56  FSVSDATITSFNLSSQPLSASNAIADANLYHNADVTFNVSAQNPNKKIGIYYDAVDVTLF 235
           F V DA +T F+L S          + NL ++  ++ N+S +N    IGI+YD  + T++
Sbjct: 9   FQVYDAELTHFDLES----------NNNLQYS--LSLNLSIRNSKSSIGIHYDRFEATVY 56

Query: 236 Y 238
           Y
Sbjct: 57  Y 57


>sp|Q8CDG5|CE041_MOUSE UPF0474 protein C5orf41 homolog OS=Mus
           musculus PE=2 SV=1
          Length = 640

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +2

Query: 95  SSQPLSASNAIADANLYHNADVTFNVSAQNPNKKIGIYYDAV 220
           +S+P S++  +   N+YHN  V F+V  ++  KK  +  + V
Sbjct: 205 ASKPTSSTQIMVKTNMYHNEKVNFHVECKDYVKKAKVKINPV 246


>sp|Q8IUR6|CE041_HUMAN UPF0474 protein C5orf41 OS=Homo sapiens
           GN=C5orf41 PE=1 SV=2
          Length = 639

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +2

Query: 95  SSQPLSASNAIADANLYHNADVTFNVSAQNPNKKIGIYYDAV 220
           +S+P S++  +   N+YHN  V F+V  ++  KK  +  + V
Sbjct: 204 ASKPTSSTQIMVKTNMYHNEKVNFHVECKDYVKKAKVKINPV 245


>sp|Q4UMT7|FTSZ_RICFE Cell division protein ftsZ OS=Rickettsia felis
           GN=ftsZ PE=3 SV=1
          Length = 452

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 19/52 (36%), Positives = 25/52 (48%)
 Frame = +2

Query: 29  LVLQPKAPDFSVSDATITSFNLSSQPLSASNAIADANLYHNADVTFNVSAQN 184
           +VL  KAP+  V   TIT F +     +A N +  ANL     V  N  AQ+
Sbjct: 1   MVLNIKAPENIVLKPTITVFGVGGAGSNAVNNMISANLQGANFVVANTDAQS 52


>sp|Q92GV7|FTSZ_RICCN Cell division protein ftsZ OS=Rickettsia
           conorii GN=ftsZ PE=3 SV=1
          Length = 452

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 19/52 (36%), Positives = 25/52 (48%)
 Frame = +2

Query: 29  LVLQPKAPDFSVSDATITSFNLSSQPLSASNAIADANLYHNADVTFNVSAQN 184
           +VL  KAP+  V   TIT F +     +A N +  ANL     V  N  AQ+
Sbjct: 1   MVLNIKAPENIVLKPTITVFGVGGAGSNAVNNMISANLQGANFVVANTDAQS 52


>sp|P58329|ATZD_PSESD Cyanuric acid amidohydrolase OS=Pseudomonas
           sp. (strain ADP) GN=atzD PE=1 SV=1
          Length = 363

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
 Frame = +2

Query: 5   GITALILYLVLQPKAPDFSVSDATITSFNLSSQPLSASNAIADANLYHNADVTFNVSAQN 184
           G +AL + L  +       V ++ +  ++LSS   SAS   A   L HN  +   +S Q 
Sbjct: 195 GASALGIALATEEVPSSMLVDESVLNDWSLSSSLASAS---AGIELEHNVVIAIGMSEQA 251

Query: 185 PNKKI---GIYYDAVD 223
            ++ +   G+  DA+D
Sbjct: 252 TSELVIAHGVMSDAID 267


>sp|Q7YS78|ARRC_PIG Arrestin-C OS=Sus scrofa GN=ARR3 PE=2 SV=2
          Length = 391

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
 Frame = +2

Query: 74  TITSFNLSSQPLSASNAIADANLYHNADVTFNVSAQNPN----KKIGIYYDAV-DVTLF 235
           T+  F LS+QPL     +     YH   ++ NVS  N      KKI I  D + DV L+
Sbjct: 183 TVRRFLLSAQPLQLQAWMDREVHYHGKPISVNVSINNSTNKVIKKIKISVDQITDVVLY 241
tr_hit_id Q6RY60
Definition tr|Q6RY60|Q6RY60_SOLTU Hin1-like protein (Fragment) OS=Solanum tuberosum
Align length 79
Score (bit) 66.2
E-value 7.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913805|Adiantum capillus-veneris mRNA, clone:
YMU001_000035_E05.
         (240 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6RY60|Q6RY60_SOLTU Hin1-like protein (Fragment) OS=Solanum t...    66   7e-10
tr|Q6L7J8|Q6L7J8_TOBAC Harpin inducing protein 1-like 9 OS=Nicot...    66   1e-09
tr|Q75QH3|Q75QH3_CAPCH Hin1 like protein OS=Capsicum chinense GN...    65   1e-09
tr|B1Q4T2|B1Q4T2_9ROSI Harpin-induced protein OS=Bruguiera gymno...    64   4e-09
tr|Q9M663|Q9M663_TOBAC Harpin inducing protein (Hin1) OS=Nicotia...    63   6e-09
tr|Q6L7J7|Q6L7J7_TOBAC Harpin inducing protein 1-like 18 OS=Nico...    63   6e-09
tr|P93353|P93353_TOBAC Hin1 protein OS=Nicotiana tabacum GN=hin1...    63   6e-09
tr|Q8H1B5|Q8H1B5_SOLTU Hin1-like protein OS=Solanum tuberosum PE...    63   8e-09
tr|Q32ZJ1|Q32ZJ1_SOLTU HIN1-like protein (Fragment) OS=Solanum t...    63   8e-09
tr|A9U1X7|A9U1X7_PHYPA Predicted protein OS=Physcomitrella paten...    60   4e-08
tr|Q9FNH6|Q9FNH6_ARATH Harpin-induced protein-like OS=Arabidopsi...    60   5e-08
tr|Q94K35|Q94K35_ARATH Putative harpin-induced protein (Fragment...    60   5e-08
tr|B0ZVZ0|B0ZVZ0_ARATH NHL3 (Fragment) OS=Arabidopsis thaliana G...    60   5e-08
tr|B0ZVY9|B0ZVY9_ARATH NHL3 (Fragment) OS=Arabidopsis thaliana G...    60   5e-08
tr|B0ZVS7|B0ZVS7_ARATH NHL3 (Fragment) OS=Arabidopsis thaliana G...    60   5e-08
tr|B0ZVS1|B0ZVS1_ARATH NHL3 (Fragment) OS=Arabidopsis thaliana G...    60   5e-08
tr|B0ZVQ4|B0ZVQ4_ARATH NHL3 (Fragment) OS=Arabidopsis thaliana G...    60   5e-08
tr|B0ZVQ2|B0ZVQ2_ARATH NHL3 (Fragment) OS=Arabidopsis thaliana G...    60   5e-08
tr|B0ZVQ1|B0ZVQ1_ARATH NHL3 (Fragment) OS=Arabidopsis thaliana G...    60   5e-08
tr|B0ZVP9|B0ZVP9_ARATH NHL3 (Fragment) OS=Arabidopsis thaliana G...    60   5e-08
tr|B0ZVP8|B0ZVP8_ARATH NHL3 (Fragment) OS=Arabidopsis thaliana G...    60   5e-08
tr|A9NNJ0|A9NNJ0_PICSI Putative uncharacterized protein OS=Picea...    60   7e-08
tr|B6TID8|B6TID8_MAIZE VAMP protein SEC22 OS=Zea mays PE=2 SV=1        59   9e-08
tr|B4FDU9|B4FDU9_MAIZE Putative uncharacterized protein OS=Zea m...    59   9e-08
tr|Q2QXF1|Q2QXF1_ORYSJ Os12g0159600 protein OS=Oryza sativa subs...    59   1e-07
tr|B5M1Z0|B5M1Z0_RHEAU Harpin-induced protein OS=Rheum australe ...    59   1e-07
tr|A7PG45|A7PG45_VITVI Chromosome chr6 scaffold_15, whole genome...    59   1e-07
tr|A2ZIA6|A2ZIA6_ORYSI Putative uncharacterized protein OS=Oryza...    59   1e-07
tr|B8AEX4|B8AEX4_ORYSI Putative uncharacterized protein OS=Oryza...    59   2e-07
tr|A9RSB4|A9RSB4_PHYPA Predicted protein OS=Physcomitrella paten...    59   2e-07

>tr|Q6RY60|Q6RY60_SOLTU Hin1-like protein (Fragment) OS=Solanum
           tuberosum PE=2 SV=1
          Length = 187

 Score = 66.2 bits (160), Expect = 7e-10
 Identities = 33/79 (41%), Positives = 52/79 (65%)
 Frame = +2

Query: 2   LGITALILYLVLQPKAPDFSVSDATITSFNLSSQPLSASNAIADANLYHNADVTFNVSAQ 181
           LG+ AL+L+LVL+P    F V+DAT+T F+LS+         A+  LY+  D+  N++ +
Sbjct: 56  LGVIALVLWLVLRPNKVKFYVTDATLTQFDLST---------ANNTLYY--DLALNMTIR 104

Query: 182 NPNKKIGIYYDAVDVTLFY 238
           NPNK++GIYYD+++    Y
Sbjct: 105 NPNKRVGIYYDSIEARAMY 123


>tr|Q6L7J8|Q6L7J8_TOBAC Harpin inducing protein 1-like 9
           OS=Nicotiana tabacum GN=hin9 PE=2 SV=1
          Length = 229

 Score = 65.9 bits (159), Expect = 1e-09
 Identities = 33/79 (41%), Positives = 51/79 (64%)
 Frame = +2

Query: 2   LGITALILYLVLQPKAPDFSVSDATITSFNLSSQPLSASNAIADANLYHNADVTFNVSAQ 181
           +G+ AL+L+LVL+P    F V+DAT+T F+LS    + +N I       N D+  N++ +
Sbjct: 56  IGVAALVLWLVLRPNKVKFYVTDATLTQFDLS----TTNNTI-------NYDLALNMTIR 104

Query: 182 NPNKKIGIYYDAVDVTLFY 238
           NPNK+IGIYYD+++    Y
Sbjct: 105 NPNKRIGIYYDSIEARAMY 123


>tr|Q75QH3|Q75QH3_CAPCH Hin1 like protein OS=Capsicum chinense
           GN=HIN1-Cc PE=2 SV=1
          Length = 228

 Score = 65.5 bits (158), Expect = 1e-09
 Identities = 34/79 (43%), Positives = 52/79 (65%)
 Frame = +2

Query: 2   LGITALILYLVLQPKAPDFSVSDATITSFNLSSQPLSASNAIADANLYHNADVTFNVSAQ 181
           LG+ AL+L+LVL+P    F V+DAT+T F+LS+         A+  LY+  D+  N++ +
Sbjct: 56  LGVIALVLWLVLRPNKVKFYVTDATLTQFDLST---------ANNTLYY--DLALNMTIR 104

Query: 182 NPNKKIGIYYDAVDVTLFY 238
           NPNK+IGIYYD+++    Y
Sbjct: 105 NPNKRIGIYYDSIEARGMY 123


>tr|B1Q4T2|B1Q4T2_9ROSI Harpin-induced protein OS=Bruguiera
           gymnorhiza PE=2 SV=1
          Length = 200

 Score = 63.9 bits (154), Expect = 4e-09
 Identities = 32/79 (40%), Positives = 49/79 (62%)
 Frame = +2

Query: 2   LGITALILYLVLQPKAPDFSVSDATITSFNLSSQPLSASNAIADANLYHNADVTFNVSAQ 181
           +GI  L+++LVL+P    F V+DAT+T FN++          A+  L +N  +  N++ +
Sbjct: 53  IGIAILVIWLVLRPNKIKFHVTDATLTQFNIT----------ANNTLQYN--LALNLTVR 100

Query: 182 NPNKKIGIYYDAVDVTLFY 238
           NPNK+IGIYYD +D   FY
Sbjct: 101 NPNKRIGIYYDKIDAAAFY 119


>tr|Q9M663|Q9M663_TOBAC Harpin inducing protein (Hin1) OS=Nicotiana
           tabacum GN=hin1 PE=2 SV=1
          Length = 229

 Score = 63.2 bits (152), Expect = 6e-09
 Identities = 33/79 (41%), Positives = 50/79 (63%)
 Frame = +2

Query: 2   LGITALILYLVLQPKAPDFSVSDATITSFNLSSQPLSASNAIADANLYHNADVTFNVSAQ 181
           LG+ AL+L+LVL+P    F V+DAT+T F+LS    + +N I         D+  N++ +
Sbjct: 56  LGVIALVLWLVLRPNKVKFYVTDATLTQFDLS----TTNNTIF-------YDLALNMTIR 104

Query: 182 NPNKKIGIYYDAVDVTLFY 238
           NPNK+IGIYYD+++    Y
Sbjct: 105 NPNKRIGIYYDSIEARALY 123


>tr|Q6L7J7|Q6L7J7_TOBAC Harpin inducing protein 1-like 18
           OS=Nicotiana tabacum GN=hin18 PE=2 SV=1
          Length = 229

 Score = 63.2 bits (152), Expect = 6e-09
 Identities = 33/79 (41%), Positives = 50/79 (63%)
 Frame = +2

Query: 2   LGITALILYLVLQPKAPDFSVSDATITSFNLSSQPLSASNAIADANLYHNADVTFNVSAQ 181
           LG+ AL+L+LVL+P    F V+DAT+T F+LS    + +N I         D+  N++ +
Sbjct: 56  LGVIALVLWLVLRPNKVKFYVTDATLTQFDLS----NTNNTIF-------YDLALNMTIR 104

Query: 182 NPNKKIGIYYDAVDVTLFY 238
           NPNK+IGIYYD+++    Y
Sbjct: 105 NPNKRIGIYYDSIEARAMY 123


>tr|P93353|P93353_TOBAC Hin1 protein OS=Nicotiana tabacum GN=hin1
           PE=2 SV=1
          Length = 221

 Score = 63.2 bits (152), Expect = 6e-09
 Identities = 33/79 (41%), Positives = 50/79 (63%)
 Frame = +2

Query: 2   LGITALILYLVLQPKAPDFSVSDATITSFNLSSQPLSASNAIADANLYHNADVTFNVSAQ 181
           LG+ AL+L+LVL+P    F V+DAT+T F+LS    + +N I         D+  N++ +
Sbjct: 48  LGVIALVLWLVLRPNKVKFYVTDATLTQFDLS----TTNNTIF-------YDLALNMTIR 96

Query: 182 NPNKKIGIYYDAVDVTLFY 238
           NPNK+IGIYYD+++    Y
Sbjct: 97  NPNKRIGIYYDSIEARALY 115


>tr|Q8H1B5|Q8H1B5_SOLTU Hin1-like protein OS=Solanum tuberosum PE=2
           SV=1
          Length = 225

 Score = 62.8 bits (151), Expect = 8e-09
 Identities = 32/79 (40%), Positives = 51/79 (64%)
 Frame = +2

Query: 2   LGITALILYLVLQPKAPDFSVSDATITSFNLSSQPLSASNAIADANLYHNADVTFNVSAQ 181
           LG+ AL+L+LVL+P   +F V+DAT+T F+ S+          +  LY+  D+  N++ +
Sbjct: 54  LGVIALVLWLVLRPNKVNFYVTDATLTQFDYST---------TNNTLYY--DLALNMTIR 102

Query: 182 NPNKKIGIYYDAVDVTLFY 238
           NPNK+IGIYYD+++    Y
Sbjct: 103 NPNKRIGIYYDSIEARGMY 121


>tr|Q32ZJ1|Q32ZJ1_SOLTU HIN1-like protein (Fragment) OS=Solanum
           tuberosum PE=4 SV=1
          Length = 208

 Score = 62.8 bits (151), Expect = 8e-09
 Identities = 32/79 (40%), Positives = 51/79 (64%)
 Frame = +2

Query: 2   LGITALILYLVLQPKAPDFSVSDATITSFNLSSQPLSASNAIADANLYHNADVTFNVSAQ 181
           LG+ AL+L+LVL+P   +F V+DAT+T F+ S+          +  LY+  D+  N++ +
Sbjct: 49  LGVIALVLWLVLRPNKVNFYVTDATLTQFDYST---------TNNTLYY--DLALNMTIR 97

Query: 182 NPNKKIGIYYDAVDVTLFY 238
           NPNK+IGIYYD+++    Y
Sbjct: 98  NPNKRIGIYYDSIEARGMY 116


>tr|A9U1X7|A9U1X7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_173224 PE=4 SV=1
          Length = 278

 Score = 60.5 bits (145), Expect = 4e-08
 Identities = 30/80 (37%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
 Frame = +2

Query: 2   LGITALILYLVLQPKAPDFSVSDATITSFNLSSQPLSASNAIADAN-LYHNADVTFNVSA 178
           +G+ ALI++++ +PK P FSV D  I   N+++   +A+ ++   N  Y + D+ F + A
Sbjct: 94  VGLAALIIWILFKPKIPQFSVQDVRINKLNVTATYDTATASLKATNPTYVDTDILFTIHA 153

Query: 179 QNPNKKIGIYYDAVDVTLFY 238
            NPNKKI I Y  V+V + Y
Sbjct: 154 SNPNKKIRIDYKKVNVQMTY 173