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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913806
Clone id YMU001_000035_E07
Library
Length 555
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000035_E07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CTCTACTCCGTCAAATGGATGTCAAACAGCATTCTTGCATGGTGAACTTGATGAGGAAAT
TTACATGAAGCAACTGCCCAGCTACACCTCTGCTGATCAGCCACATTATGCTTGCCCGTT
CTTAAAATCCCTGAGTCTATGGGCGAAACAATCTCCGCGCCAGTGGTAATGGCACTTCTT
CAATGCATAAACACACTGGGGTATATCCACTTCAACTCTGAGCCCAACTTCTATAGCGGT
CACACTCAGGAAGTGTTTCTCCTCCTTGCCATTATGTGGATGATTTGCAATTCCCAGGCA
ACACTTGATACTACAAAAGCTGAACTCAACTTTTTCTTCTCCATGTCCGATAAAGCCTAA
AGGAGCTCTCCATTTTTTCATCAGCATCCAAGTGTTTCAAGATCCTTCACAGGTCCAAAA
GTACAACATGGGCTAGCTGTAAAGGCATTGAAACTCCTCTCCCAGCTGATCTGAACCTCC
TGAAAGCTGCCCCCGACAGTGATATGCAGACCTTCCCCTACATTCTGGGNGGGTGTTCAC
TATCTGGTAACATGC
■■Homology search results ■■ -
sp_hit_id P10978
Definition sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum
Align length 48
Score (bit) 51.2
E-value 3.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913806|Adiantum capillus-veneris mRNA, clone:
YMU001_000035_E07.
         (555 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from tra...    51   3e-06
sp|P25600|YCH4_YEAST Putative transposon Ty5-1 protein YCL074W O...    35   0.19 
sp|P90756|YE1J_CAEEL UPF0392 protein C27A7.2 OS=Caenorhabditis e...    33   0.93 
sp|P92519|M810_ARATH Uncharacterized mitochondrial protein AtMg0...    28   2.8  

>sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from
            transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
          Length = 1328

 Score = 51.2 bits (121), Expect = 3e-06
 Identities = 25/48 (52%), Positives = 32/48 (66%)
 Frame = +2

Query: 23   QTAFLHGELDEEIYMKQLPSYTSADQPHYACPFLKSLSLWAKQSPRQW 166
            +TAFLHG+L+EEIYM+Q   +  A + H  C   KSL    KQ+PRQW
Sbjct: 924  KTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSL-YGLKQAPRQW 970


>sp|P25600|YCH4_YEAST Putative transposon Ty5-1 protein YCL074W
           OS=Saccharomyces cerevisiae GN=TY5A PE=4 SV=2
          Length = 308

 Score = 35.4 bits (80), Expect = 0.19
 Identities = 19/53 (35%), Positives = 26/53 (49%)
 Frame = +2

Query: 26  TAFLHGELDEEIYMKQLPSYTSADQPHYACPFLKSLSLWAKQSPRQW*WHFFN 184
           TAFL+  +DE IY+KQ P + +   P Y       +    KQ+P  W  H  N
Sbjct: 5   TAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGM-YGLKQAPLLWNEHINN 56


>sp|P90756|YE1J_CAEEL UPF0392 protein C27A7.2 OS=Caenorhabditis
           elegans GN=C27A7.2 PE=2 SV=2
          Length = 362

 Score = 33.1 bits (74), Expect = 0.93
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
 Frame = -2

Query: 155 EIVSPIDSGILRTGK-------HNVADQQRCSWAVASCKFPHQVHHAR 33
           E+VS + S +++ GK       HN   QQR    + + KFPH VH  R
Sbjct: 264 ELVSSLKSSLVKAGKVIVKPELHNSKTQQRGKCRINNVKFPHLVHVQR 311


>sp|P92519|M810_ARATH Uncharacterized mitochondrial protein
           AtMg00810 OS=Arabidopsis thaliana GN=AtMg00810 PE=4 SV=1
          Length = 240

 Score = 27.7 bits (60), Expect(2) = 2.8
 Identities = 13/36 (36%), Positives = 24/36 (66%)
 Frame = +2

Query: 302 HLILQKLNSTFSSPCPIKPKGALHFFISIQVFQDPS 409
           ++++ +L+STFS    +K  G +H+F+ IQ+   PS
Sbjct: 21  NMLIFQLSSTFS----MKDLGPVHYFLGIQIKTHPS 52



 Score = 22.3 bits (46), Expect(2) = 2.8
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +3

Query: 438 CKGIETPLPADLN-LLKAAPDSDMQTFPYILG 530
           CK + TPLP  LN  +  A   D   F  I+G
Sbjct: 74  CKPMSTPLPLKLNSSVSTAKYPDPSDFRSIVG 105
tr_hit_id Q2QY49
Definition tr|Q2QY49|Q2QY49_ORYSJ Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. japonica
Align length 134
Score (bit) 59.7
E-value 1.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913806|Adiantum capillus-veneris mRNA, clone:
YMU001_000035_E07.
         (555 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q2QY49|Q2QY49_ORYSJ Retrotransposon protein, putative, Ty1-co...    60   1e-07
tr|A5AUX8|A5AUX8_VITVI Putative uncharacterized protein OS=Vitis...    60   1e-07
tr|Q53RJ9|Q53RJ9_ORYSJ Reverse transcriptase (RNA-dependent DNA ...    57   5e-07
tr|A7KZK8|A7KZK8_MALDO Reverse transcriptase (Fragment) OS=Malus...    56   1e-06
tr|A5B6D8|A5B6D8_VITVI Putative uncharacterized protein OS=Vitis...    56   1e-06
tr|Q9FQJ8|Q9FQJ8_9CARY Reverse transcriptase-like protein (Fragm...    56   1e-06
tr|Q94KV0|Q94KV0_ARATH Polyprotein OS=Arabidopsis thaliana PE=4 ...    56   1e-06
tr|Q2EIL7|Q2EIL7_PHETU Reverse transcriptase (Fragment) OS=Pheli...    55   2e-06
tr|Q204I4|Q204I4_MALDO Reverse transcriptase (Fragment) OS=Malus...    55   2e-06
tr|B1PBY1|B1PBY1_ARALP Putative uncharacterized protein OS=Arabi...    55   2e-06
tr|A7KZL0|A7KZL0_MALDO Reverse transcriptase (Fragment) OS=Malus...    55   2e-06
tr|Q9T0C5|Q9T0C5_ARATH Retrotransposon like protein OS=Arabidops...    55   3e-06
tr|O82493|O82493_ARATH T12H20.12 protein OS=Arabidopsis thaliana...    55   3e-06
tr|Q4JQ49|Q4JQ49_9TRAC Reverse transcriptase (Fragment) OS=Lycop...    55   3e-06
tr|Q2EIT2|Q2EIT2_OROBU Reverse transcriptase (Fragment) OS=Oroba...    55   3e-06
tr|Q2EIQ0|Q2EIQ0_ORORA Reverse transcriptase (Fragment) OS=Oroba...    55   3e-06
tr|Q2EIP7|Q2EIP7_ORORA Reverse transcriptase (Fragment) OS=Oroba...    55   3e-06
tr|Q2EIM2|Q2EIM2_PHETU Reverse transcriptase (Fragment) OS=Pheli...    55   3e-06
tr|Q2EIU3|Q2EIU3_OROCE Reverse transcriptase (Fragment) OS=Oroba...    54   4e-06
tr|Q9SSB1|Q9SSB1_ARATH T18A20.5 protein OS=Arabidopsis thaliana ...    54   6e-06
tr|Q2EIS9|Q2EIS9_OROBU Reverse transcriptase (Fragment) OS=Oroba...    54   6e-06
tr|A7KZM0|A7KZM0_MALDO Reverse transcriptase (Fragment) OS=Malus...    54   6e-06
tr|A5B4S8|A5B4S8_VITVI Putative uncharacterized protein OS=Vitis...    54   6e-06
tr|Q9MAK6|Q9MAK6_ARATH F27F5.11 OS=Arabidopsis thaliana PE=4 SV=1      54   7e-06
tr|Q2R2C8|Q2R2C8_ORYSJ Retrotransposon protein, putative, Ty1-co...    54   7e-06
tr|Q2EIT7|Q2EIT7_OROCE Reverse transcriptase (Fragment) OS=Oroba...    54   7e-06
tr|Q2EIR6|Q2EIR6_PHEHR Reverse transcriptase (Fragment) OS=Pheli...    54   7e-06
tr|A7KZM5|A7KZM5_MALDO Reverse transcriptase (Fragment) OS=Malus...    54   7e-06
tr|A5C2D1|A5C2D1_VITVI Putative uncharacterized protein OS=Vitis...    54   7e-06
tr|Q9XGV1|Q9XGV1_9LAMI Reverse transcriptase (Fragment) OS=Oroba...    53   1e-05

>tr|Q2QY49|Q2QY49_ORYSJ Retrotransposon protein, putative, Ty1-copia
           subclass OS=Oryza sativa subsp. japonica
           GN=LOC_Os12g03850 PE=4 SV=1
          Length = 900

 Score = 59.7 bits (143), Expect = 1e-07
 Identities = 43/134 (32%), Positives = 63/134 (47%), Gaps = 6/134 (4%)
 Frame = +2

Query: 23  QTAFLHGELDEEIYMKQLPSYTSADQPHYACPFLKSLSLWAKQSPRQW*WHFFNA*THWG 202
           Q AFLHG LDEE+YM+Q P +  A QPH+ C   K+L    KQ+PR W           G
Sbjct: 494 QNAFLHGYLDEEVYMRQPPGFEDARQPHFLCKLDKAL-YGLKQAPRAWYSRLSKKLQELG 552

Query: 203 ISTSTLSPTSIAVTL--RKCFSSL----PLCG*FAIPRQHLILQKLNSTFSSPCPIKPKG 364
            S+S    +         K F  +     +    + P  + +L+ L   F+    +K  G
Sbjct: 553 FSSSKADTSLFFYNKGHHKMFVLVYVDDIIVASSSSPAVNALLKDLEKDFA----LKDLG 608

Query: 365 ALHFFISIQVFQDP 406
            LH+F+ I+V + P
Sbjct: 609 DLHYFLGIEVKRTP 622


>tr|A5AUX8|A5AUX8_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_015838 PE=4 SV=1
          Length = 1352

 Score = 59.7 bits (143), Expect = 1e-07
 Identities = 43/135 (31%), Positives = 64/135 (47%), Gaps = 9/135 (6%)
 Frame = +2

Query: 29  AFLHGELDEEIYMKQLPSYTSADQPHYACPFLKSLSLWAKQSPRQW*WHFFNA*THWGIS 208
           AFLHG L+E ++M Q P +    QP + C   KS+    KQ+PRQW     +A   +G  
Sbjct: 14  AFLHGNLEETVFMHQPPXFEDPSQPQHVCKLKKSI-YGLKQAPRQWYKALRDALLRFGFI 72

Query: 209 TSTLSPTSIAVTLRKCFSSLPLCG*F---------AIPRQHLILQKLNSTFSSPCPIKPK 361
            S    T  ++ + K    L  C  +          +   + I+ KL STFS    +K  
Sbjct: 73  HSA---TDNSLFIYKSHDILCYCLVYVDDIIVTSNTLSFVNNIINKLGSTFS----VKDM 125

Query: 362 GALHFFISIQVFQDP 406
           G+LH+F+ I+V   P
Sbjct: 126 GSLHYFLGIEVIPTP 140


>tr|Q53RJ9|Q53RJ9_ORYSJ Reverse transcriptase (RNA-dependent DNA
           polymerase), putative (Retrotransposon protein,
           putative, Ty1-copia subclass) OS=Oryza sativa subsp.
           japonica GN=LOC_Os03g50180 PE=4 SV=1
          Length = 757

 Score = 57.4 bits (137), Expect = 5e-07
 Identities = 43/131 (32%), Positives = 59/131 (45%), Gaps = 7/131 (5%)
 Frame = +2

Query: 23  QTAFLHGELDEEIYMKQLPSYTSADQPHYACPFLKSLSLWAKQSPRQW*WHFFNA*THWG 202
           Q AFLHG L+EE+YM Q P +    +PHY C   KSL    KQ+PR W     N     G
Sbjct: 447 QNAFLHGHLEEEVYMDQPPGFEDVTKPHYICKLDKSL-YGLKQAPRAWFARLSNKLIDLG 505

Query: 203 ISTST-------LSPTSIAVTLRKCFSSLPLCG*FAIPRQHLILQKLNSTFSSPCPIKPK 361
            S S        L    IA+ +      + +    +      +LQ L   F+    +K  
Sbjct: 506 FSASKADTSLFFLHKGDIAIFILVYVDDIIVVS-SSERATTALLQDLKVEFA----LKDL 560

Query: 362 GALHFFISIQV 394
           G LH+F+ I+V
Sbjct: 561 GELHYFLGIEV 571


>tr|A7KZK8|A7KZK8_MALDO Reverse transcriptase (Fragment) OS=Malus
           domestica PE=4 SV=1
          Length = 88

 Score = 56.2 bits (134), Expect = 1e-06
 Identities = 33/76 (43%), Positives = 44/76 (57%)
 Frame = +2

Query: 26  TAFLHGELDEEIYMKQLPSYTSADQPHYACPFLKSLSLWAKQSPRQW*WHFFNA*THWGI 205
           TAFLHG+L+EE+YM+Q   +     P Y C  +KSL    KQ+PR W   F +     G 
Sbjct: 1   TAFLHGDLEEEVYMQQPQGFVDPSCPSYVCKLIKSL-YGLKQAPRAWNSKFTSYLPSLGF 59

Query: 206 STSTLSPTSIAVTLRK 253
           +TS LS TS+ V + K
Sbjct: 60  TTS-LSDTSLFVKVDK 74


>tr|A5B6D8|A5B6D8_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_035269 PE=4 SV=1
          Length = 928

 Score = 56.2 bits (134), Expect = 1e-06
 Identities = 43/131 (32%), Positives = 69/131 (52%), Gaps = 5/131 (3%)
 Frame = +2

Query: 32  FLHGELDEEIYMKQLPSYTSADQPHYACPFLKSLSLWAKQSPRQW*WHFFNA*THWGIST 211
           FL+GEL EE+YM Q PS+    +  + C   K+L    KQ+PR W     N+   WG S 
Sbjct: 107 FLNGELKEEVYMVQSPSFVDNSKLDFICKLYKAL-YGLKQAPRAWFTKLKNSLLAWGFS- 164

Query: 212 STLSPTSIAVTLRKCFSSLPLC----G*FAIPRQHLILQKLNSTFSSPCPIKPKGALHFF 379
           S+LS +S+ + LRK    + +         I    +++ ++ S+  S   IK  G L++F
Sbjct: 165 SSLSDSSMFL-LRKGTDMIIILIYVDDIIVIGSNIVLVHQMVSSLHSQFAIKDLGILNYF 223

Query: 380 ISIQV-FQDPS 409
           + ++V +Q PS
Sbjct: 224 LGVEVSWQGPS 234


>tr|Q9FQJ8|Q9FQJ8_9CARY Reverse transcriptase-like protein
           (Fragment) OS=Amaranthus quitensis PE=4 SV=1
          Length = 95

 Score = 55.8 bits (133), Expect = 1e-06
 Identities = 28/48 (58%), Positives = 33/48 (68%)
 Frame = +2

Query: 23  QTAFLHGELDEEIYMKQLPSYTSADQPHYACPFLKSLSLWAKQSPRQW 166
           +TAFLHG+L+EEI MKQ   +    + HYAC  LKSL    KQSPRQW
Sbjct: 5   KTAFLHGDLEEEILMKQPEGFEIPGKEHYACRLLKSL-YGLKQSPRQW 51


>tr|Q94KV0|Q94KV0_ARATH Polyprotein OS=Arabidopsis thaliana PE=4 SV=1
          Length = 1453

 Score = 55.8 bits (133), Expect = 1e-06
 Identities = 40/130 (30%), Positives = 59/130 (45%), Gaps = 4/130 (3%)
 Frame = +2

Query: 29   AFLHGELDEEIYMKQLPSYTSADQPHYACPFLKSLSLWAKQSPRQW*WHFFNA*THWGIS 208
            AFLHGEL E +YM Q P +   ++P Y C   K+L    KQ+PR W     N    +G S
Sbjct: 998  AFLHGELKEPVYMLQPPGFVDQEKPSYVCRLTKAL-YGLKQAPRAWFDTISNYLLDFGFS 1056

Query: 209  TSTLSPTSIAVTLRKCFSSLPLC----G*FAIPRQHLILQKLNSTFSSPCPIKPKGALHF 376
             S   P+    T  K   +L L             H +LQ+L  + +    +K  GA  +
Sbjct: 1057 CSKSDPS--LFTYHKNGKTLVLLLYVDDILLTGSDHNLLQELLMSLNKRFSMKDLGAPSY 1114

Query: 377  FISIQVFQDP 406
            F+ +++   P
Sbjct: 1115 FLGVEIESSP 1124


>tr|Q2EIL7|Q2EIL7_PHETU Reverse transcriptase (Fragment)
           OS=Phelipanche tunetana PE=4 SV=1
          Length = 87

 Score = 55.5 bits (132), Expect = 2e-06
 Identities = 27/47 (57%), Positives = 32/47 (68%)
 Frame = +2

Query: 26  TAFLHGELDEEIYMKQLPSYTSADQPHYACPFLKSLSLWAKQSPRQW 166
           TAFLHGELDE+IYM Q   +T    P++ C F KSL    +QSPRQW
Sbjct: 1   TAFLHGELDEQIYMNQPEGFTDPKYPNHVCLFKKSL-YGLQQSPRQW 46


>tr|Q204I4|Q204I4_MALDO Reverse transcriptase (Fragment) OS=Malus
           domestica PE=4 SV=1
          Length = 85

 Score = 55.5 bits (132), Expect = 2e-06
 Identities = 30/72 (41%), Positives = 42/72 (58%)
 Frame = +2

Query: 26  TAFLHGELDEEIYMKQLPSYTSADQPHYACPFLKSLSLWAKQSPRQW*WHFFNA*THWGI 205
           TAFLHG L E++YM Q P +     PH+ C   +SL    KQ+PR W   F++A    G 
Sbjct: 1   TAFLHGYLKEDVYMVQPPGFVDQSMPHHVCKLKRSL-YGLKQAPRAWYEAFYSALVSLGF 59

Query: 206 STSTLSPTSIAV 241
           S+S+ S TS+ +
Sbjct: 60  SSSS-SDTSLFI 70


>tr|B1PBY1|B1PBY1_ARALP Putative uncharacterized protein
           OS=Arabidopsis lyrata subsp. petraea GN=AP2_E11.1 PE=4
           SV=1
          Length = 471

 Score = 55.5 bits (132), Expect = 2e-06
 Identities = 37/126 (29%), Positives = 59/126 (46%), Gaps = 3/126 (2%)
 Frame = +2

Query: 23  QTAFLHGELDEEIYMKQLPSYTSADQPHYACPFLKSLSLWAKQSPRQW*WHFFNA*THWG 202
           + AFL G+L+E +YM Q P +T  + P Y C   K++    KQ+PR W   F       G
Sbjct: 67  KNAFLQGDLEETVYMHQPPGFTDKNNPSYVCKLNKAI-YGLKQAPRAWNSRFSTYIKRMG 125

Query: 203 ISTSTLSPTSIAVTLRKC---FSSLPLCG*FAIPRQHLILQKLNSTFSSPCPIKPKGALH 373
              S  + +S+ +  R C   +  L +          L+LQK+ S   +  P+   G LH
Sbjct: 126 FVQSK-ADSSLFIFKRGCECAYLLLYVDDILLTASSTLLLQKIISKLKTEFPMTDMGKLH 184

Query: 374 FFISIQ 391
            F+ ++
Sbjct: 185 HFLGVK 190