NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913810
Clone id YMU001_000035_E11
Library
Length 502
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000035_E11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ATGATAGTATATATTTGTACTGGGCACAATCTGAAGGGCAAGATCTGTCGATGGGATGAA
CTTGTTGCTTAAAGCAGGACTATTTACTTCATGTGTATAATTGTAGGCGCTGTGGAGTTT
GCCATGATATGGGCCTTGTGCGGTTTAGGTGGGGCAGGCCCCACTCCTTCTCTGCCCATT
CTGGCAGAGTTTGATGACACTCTTTGTGCCCTCTGCTGGAGTGCATCTGTCTATGCTGTG
AACTGCAAGGCAGCATGCAGAGGCAGCAGCTGCTGGAGTTCAGCACCGCTGGCTACTCTT
CGAATCTGTTCTTGTTGTTGTTCAGCTGAAATGATGTATCATCTCCACGTGCTGCAAGGT
GAAGCAAAACCAAAGTTCCATTAACGCTGTTTGTCGCTTACCTGCGTGGGCTCGCCACAA
CAGTCGAAAGTGGAGAATGTGGGTTTGGCCACTACTGTTTTGCACCAACCATCAACCATC
GCAGCCAGAAGCTGACAATGGC
■■Homology search results ■■ -
sp_hit_id Q8BHK0
Definition sp|Q8BHK0|PNMA2_MOUSE Paraneoplastic antigen Ma2 homolog OS=Mus musculus
Align length 72
Score (bit) 31.6
E-value 2.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913810|Adiantum capillus-veneris mRNA, clone:
YMU001_000035_E11.
         (502 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8BHK0|PNMA2_MOUSE Paraneoplastic antigen Ma2 homolog OS=Mus ...    32   2.1  
sp|Q54V53|AQPB_DICDI Aquaporin B OS=Dictyostelium discoideum GN=...    32   2.2  
sp|O88436|PAX4_RAT Paired box protein Pax-4 OS=Rattus norvegicus...    31   2.9  
sp|Q91ZU1|ASB6_MOUSE Ankyrin repeat and SOCS box protein 6 OS=Mu...    31   3.7  
sp|Q5U430|UBR3_MOUSE E3 ubiquitin-protein ligase UBR3 OS=Mus mus...    30   4.9  
sp|Q6ZT12|UBR3_HUMAN E3 ubiquitin-protein ligase UBR3 OS=Homo sa...    30   4.9  
sp|P46687|GASA3_ARATH Gibberellin-regulated protein 3 OS=Arabido...    30   4.9  
sp|Q54NU5|BTG_DICDI BTG family protein OS=Dictyostelium discoide...    30   6.4  
sp|Q6PDH0|PHLB1_MOUSE Pleckstrin homology-like domain family B m...    30   8.2  
sp|Q9NDJ2|DOM_DROME Helicase domino OS=Drosophila melanogaster G...    30   8.2  
sp|Q6UVM3|KCNT2_HUMAN Potassium channel subfamily T member 2 OS=...    30   8.3  
sp|Q57816|FTSZ1_METJA Cell division protein ftsZ homolog 1 OS=Me...    30   8.3  

>sp|Q8BHK0|PNMA2_MOUSE Paraneoplastic antigen Ma2 homolog OS=Mus
           musculus GN=Pnma2 PE=2 SV=1
          Length = 365

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 17/72 (23%), Positives = 32/72 (44%)
 Frame = -3

Query: 221 LQQRAQRVSSNSARMGREGVGPAPPKPHKAHIMANSTAPTIIHMK*IVLL*ATSSSHRQI 42
           L++  Q V+     +  EGV PA P      ++A+ T   ++H              R +
Sbjct: 110 LEKEGQTVAGMFRALKHEGVSPATPPCTSPELLAHLTGQAMVH------------GQRPL 157

Query: 41  LPFRLCPVQIYT 6
           LP + C ++I++
Sbjct: 158 LPVKYCKMRIFS 169


>sp|Q54V53|AQPB_DICDI Aquaporin B OS=Dictyostelium discoideum
           GN=wacA PE=2 SV=1
          Length = 274

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 15/59 (25%), Positives = 29/59 (49%)
 Frame = +1

Query: 4   IVYICTGHNLKGKICRWDELVA*SRTIYFMCIIVGAVEFAMIWALCGLGGAGPTPSLPI 180
           +VYI +G  L       D +V     +  +C++ G    A+IW++ G+ G    P++ +
Sbjct: 44  VVYIVSGSTLAANFAVSDPIVR----VCLICLVQGFAFAAIIWSISGISGCQLNPAVTV 98


>sp|O88436|PAX4_RAT Paired box protein Pax-4 OS=Rattus norvegicus
           GN=Pax4 PE=2 SV=1
          Length = 349

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 8/85 (9%)
 Frame = +1

Query: 151 GAGPTPSLPILAEFDDTLCALCWSASVYAVNCKAACRGS-----SCWSSAPLAT---LRI 306
           G+ P+ +LP+L + + + C LCW A     +     +        C S  P+A+   +  
Sbjct: 261 GSVPSAALPVLEQLNPSFCQLCWGAVPDRCSSDTTSQACLQPYWECHSLLPVASSSYMEF 320

Query: 307 CSCCCSAEMMYHLHVLQGEAKPKFH 381
              C +   ++HL    G+A   ++
Sbjct: 321 AWPCLTTHPVHHLIGGPGQAPSTYY 345


>sp|Q91ZU1|ASB6_MOUSE Ankyrin repeat and SOCS box protein 6 OS=Mus
           musculus GN=Asb6 PE=1 SV=1
          Length = 418

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 20/51 (39%), Positives = 26/51 (50%)
 Frame = +1

Query: 202 LCALCWSASVYAVNCKAACRGSSCWSSAPLATLRICSCCCSAEMMYHLHVL 354
           LC L  S + Y  NC  +  G+SCWS   L   R+CS    AE   H+ +L
Sbjct: 275 LCFLLESGAAY--NC--SLHGASCWSGFNLVFERLCSHPGCAEDDSHIELL 321


>sp|Q5U430|UBR3_MOUSE E3 ubiquitin-protein ligase UBR3 OS=Mus
           musculus GN=Ubr3 PE=1 SV=3
          Length = 1889

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = +1

Query: 109 AVEFAMIWALCGL-GGAGPTPSLPILAEFDDT-LCALCWSASVYAVNCKAACRGSSCWS 279
           A E A+ W  C L GG G       +  +D   LC L W+A+  A  C+  C  S C S
Sbjct: 86  AEEDALEWCKCLLAGGGGYEEFCAAVRAYDPAALCGLVWTANFVAYRCR-TCGISPCMS 143


>sp|Q6ZT12|UBR3_HUMAN E3 ubiquitin-protein ligase UBR3 OS=Homo
           sapiens GN=UBR3 PE=2 SV=2
          Length = 1888

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = +1

Query: 109 AVEFAMIWALCGL-GGAGPTPSLPILAEFDDT-LCALCWSASVYAVNCKAACRGSSCWS 279
           A E A+ W  C L GG G       +  +D   LC L W+A+  A  C+  C  S C S
Sbjct: 86  AEEEALEWCKCLLAGGGGYDEFCAAVRAYDPAALCGLVWTANFVAYRCR-TCGISPCMS 143


>sp|P46687|GASA3_ARATH Gibberellin-regulated protein 3
           OS=Arabidopsis thaliana GN=GASA3 PE=2 SV=1
          Length = 99

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 229 VYAVNCKAACRGSSCWSSAPLATLRICSCCC 321
           V  ++C   C+G    SS P   LR C+ CC
Sbjct: 36  VVKIDCGGRCKGRCSKSSRPNLCLRACNSCC 66


>sp|Q54NU5|BTG_DICDI BTG family protein OS=Dictyostelium discoideum
           GN=btg PE=3 SV=1
          Length = 423

 Score = 30.0 bits (66), Expect = 6.4
 Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
 Frame = -2

Query: 207 TKSVIKLCQNGQRRSGACPT*TAQGPYHGKLHSAYNYTHEVN-SPALSNKFIPSTDLALQ 31
           T++V+    NG     + P+ ++  P     +S Y++  + + SP++S    PS DL   
Sbjct: 334 TQNVVNSNSNGLNGRVSSPSLSSTAPVFSPSNSMYHHVQQQSHSPSISPPASPSKDLGNS 393

Query: 30  IVPSTNIY 7
              +TN+Y
Sbjct: 394 SGNNTNVY 401


>sp|Q6PDH0|PHLB1_MOUSE Pleckstrin homology-like domain family B
           member 1 OS=Mus musculus GN=Phldb1 PE=1 SV=1
          Length = 1371

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -3

Query: 197 SSNSARMGREGVGPAPPKPHKAHIMANSTAPTII 96
           SS+S R+GR+G    PP P    ++ +S A T++
Sbjct: 308 SSDSPRLGRKGGHERPPSPGLRGLLTDSPAATVL 341


>sp|Q9NDJ2|DOM_DROME Helicase domino OS=Drosophila melanogaster
           GN=dom PE=1 SV=2
          Length = 3198

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 9/40 (22%)
 Frame = -3

Query: 191 NSARMGREGVGPAPP------KPHKAHIM---ANSTAPTI 99
           NSA  G EG+ PAPP       PH   I    ANST+ T+
Sbjct: 5   NSAGGGHEGLSPAPPAVPDRVTPHSTEISVAPANSTSTTV 44
tr_hit_id Q6A9U0
Definition tr|Q6A9U0|Q6A9U0_PROAC Conserved protein OS=Propionibacterium acnes
Align length 38
Score (bit) 36.6
E-value 0.69
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913810|Adiantum capillus-veneris mRNA, clone:
YMU001_000035_E11.
         (502 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6A9U0|Q6A9U0_PROAC Conserved protein OS=Propionibacterium ac...    37   0.69 
tr|Q9F0F7|Q9F0F7_CAMJE Iron uptake protein FhuD OS=Campylobacter...    36   1.2  
tr|B3E6J1|B3E6J1_GEOLS Putative uncharacterized protein OS=Geoba...    33   7.6  
tr|A2R519|A2R519_ASPNC Remark: the ORF is C-terminally truncated...    33   7.6  

>tr|Q6A9U0|Q6A9U0_PROAC Conserved protein OS=Propionibacterium acnes
           GN=PPA0719 PE=4 SV=1
          Length = 214

 Score = 36.6 bits (83), Expect = 0.69
 Identities = 13/38 (34%), Positives = 25/38 (65%)
 Frame = +1

Query: 100 IVGAVEFAMIWALCGLGGAGPTPSLPILAEFDDTLCAL 213
           ++G+V+FA ++ LCG+GG+       +L  F+ ++C L
Sbjct: 88  MIGSVQFAFLYLLCGVGGSAAISLAGVLYSFEGSMCGL 125


>tr|Q9F0F7|Q9F0F7_CAMJE Iron uptake protein FhuD OS=Campylobacter
           jejuni GN=fhuD PE=4 SV=1
          Length = 374

 Score = 35.8 bits (81), Expect = 1.2
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
 Frame = +1

Query: 214 CWSASVYA-VNCKAAC---RGSSCWSSAPLATLRICSCCCSA 327
           CW+   +  + C  AC   R +S W S    ++R CSCCCSA
Sbjct: 20  CWARPCWPRLTCSGACCWRRWTSRWESPRPPSVRRCSCCCSA 61


>tr|B3E6J1|B3E6J1_GEOLS Putative uncharacterized protein
           OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 /
           SZ) GN=Glov_1094 PE=3 SV=1
          Length = 902

 Score = 33.1 bits (74), Expect = 7.6
 Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 5/54 (9%)
 Frame = +1

Query: 97  IIVGAVEFAMIWALCGLGGAGPTPSLPILAEFDDTLCA-----LCWSASVYAVN 243
           + V ++ + ++ +L  +G +GP P LP+L +FD T+ A     L W  S+Y ++
Sbjct: 717 LAVWSLGWVLVSSLTCVGDSGPLPWLPLLNQFDLTILAAIAVPLIWLRSLYTMD 770


>tr|A2R519|A2R519_ASPNC Remark: the ORF is C-terminally truncated
           due to the contig border. (Fragment) OS=Aspergillus
           niger (strain CBS 513.88 / FGSC A1513) GN=An15g02380
           PE=4 SV=1
          Length = 466

 Score = 33.1 bits (74), Expect = 7.6
 Identities = 29/100 (29%), Positives = 38/100 (38%), Gaps = 4/100 (4%)
 Frame = +1

Query: 88  FMCIIVGAVEFAMIWALCGLG--GAGPTPSLPILAEFDDTLCALCWSASVYAVNCKA--A 255
           F   I G V  AM + L  +G  G G      +L    D  C    + S +     A  A
Sbjct: 305 FAVNIFGTVVLAMCYDLQHVGSIGGGVLTGCQVLQGVMDGFCGSATTISTWVAELSALGA 364

Query: 256 CRGSSCWSSAPLATLRICSCCCSAEMMYHLHVLQGEAKPK 375
             G   W++  L +L I S  CSA     L  L G   P+
Sbjct: 365 AGGRKRWAAMSLVSLLIESSRCSATSRLILRTLAGWLSPR 404