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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913817
Clone id YMU001_000035_F07
Library
Length 418
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000035_F07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CTGCAGTAGAAATCGGCAAGTCGATGAATTTCTTTCTCTAGTTGTTTGTTTTATCCGCGG
GCTTGTTGTTGGTGGGCATCCGCTGGCGTGTTTATATGTGCACTCTCTCTGCATACGCCT
CGCAGAGACAAATTTGCATGCCACTAACCCGGGCAGATTTCTTGGCTCCAAGAAGTGGTT
GAAACTGCCTGCGTTACGTCTTCTGTGAGCCTGCTGCTCCACAATTCCAAGCTTGCTTTT
TGCAATTCAGCCTGATTTCTTGTTTTGGGTGCCCGTCAAGAAGATTTTAGGGTGCTTAGC
CGCAAATTAAGCAGTTGACGCAACCAAAATTACGAAATTTGGCAGGATTTGGGCTTCGCT
TTCCTAAGAACAGGCTCCGACATGGTAAGAATCTGCATTCTTGGCTCATGAAGAAGGT
■■Homology search results ■■ -
sp_hit_id Q2II25
Definition sp|Q2II25|PGK_ANADE Phosphoglycerate kinase OS=Anaeromyxobacter dehalogenans (strain 2CP-C)
Align length 37
Score (bit) 30.4
E-value 2.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913817|Adiantum capillus-veneris mRNA, clone:
YMU001_000035_F07.
         (418 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q2II25|PGK_ANADE Phosphoglycerate kinase OS=Anaeromyxobacter ...    30   2.9  
sp|P25981|YADH_CLOBE Uncharacterized protein in adh 3'region OS=...    30   3.8  
sp|Q77373|POL_HV1AN Gag-Pol polyprotein OS=Human immunodeficienc...    30   4.9  
sp|Q04G42|PGK_OENOB Phosphoglycerate kinase OS=Oenococcus oeni (...    30   4.9  
sp|Q7NI70|PGK_GLOVI Phosphoglycerate kinase OS=Gloeobacter viola...    30   4.9  
sp|Q77372|GAG_HV1AN Gag polyprotein OS=Human immunodeficiency vi...    30   4.9  
sp|Q4V8B0|OXR1_RAT Oxidation resistance protein 1 OS=Rattus norv...    30   4.9  
sp|O09015|MXI1_RAT MAX-interacting protein 1 OS=Rattus norvegicu...    29   6.4  
sp|A2BUH2|PGK_PROM5 Phosphoglycerate kinase OS=Prochlorococcus m...    29   8.4  
sp|A1WVV5|PGK_HALHL Phosphoglycerate kinase OS=Halorhodospira ha...    29   8.4  
sp|P46273|PGK_CANAL Phosphoglycerate kinase OS=Candida albicans ...    29   8.4  
sp|A8FHJ3|PGK_BACP2 Phosphoglycerate kinase OS=Bacillus pumilus ...    29   8.4  
sp|Q9K714|PGK_BACHD Phosphoglycerate kinase OS=Bacillus halodura...    29   8.4  
sp|P18817|LACY_KLEOX Lactose permease OS=Klebsiella oxytoca GN=l...    29   8.4  

>sp|Q2II25|PGK_ANADE Phosphoglycerate kinase OS=Anaeromyxobacter
           dehalogenans (strain 2CP-C) GN=pgk PE=3 SV=1
          Length = 396

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 243 AKSKLGIVEQQAHRRRNAGSFNHFLEPRNLPGLVACK 133
           A  + G+V++  H     G+   F+E R LPG+ AC+
Sbjct: 359 AVEQAGLVDKMKHVSTGGGASLEFIEGRELPGVKACE 395


>sp|P25981|YADH_CLOBE Uncharacterized protein in adh 3'region
           OS=Clostridium beijerinckii PE=4 SV=3
          Length = 296

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +1

Query: 259 LVLGARQEDFRVLSRKLSS*RNQNYEIWQDLGFAFLRTGSDMVR 390
           ++LG+R +D  +   KL+      Y    D  + F  TGSDM++
Sbjct: 136 VILGSRNKDLLIYEEKLNKAAGNLYVTTDDGSYEFKGTGSDMLK 179


>sp|Q77373|POL_HV1AN Gag-Pol polyprotein OS=Human immunodeficiency
           virus type 1 (isolate ANT70 group O) GN=gag-pol PE=3
           SV=3
          Length = 1435

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 17/53 (32%), Positives = 22/53 (41%)
 Frame = -1

Query: 361 KRSPNPAKFRNFGCVNCLICG*AP*NLLDGHPKQEIRLNCKKQAWNCGAAGSQ 203
           +R  NP +    G + C  CG       +GH  +  R   KK  W CG  G Q
Sbjct: 383 QRGQNPIRK---GTIKCFNCG------KEGHIARNCRAPRKKGCWKCGQEGHQ 426


>sp|Q04G42|PGK_OENOB Phosphoglycerate kinase OS=Oenococcus oeni
           (strain BAA-331 / PSU-1) GN=pgk PE=3 SV=1
          Length = 404

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -2

Query: 243 AKSKLGIVEQQAHRRRNAGSFNHFLEPRNLPGLVA 139
           A S+LGI +Q  H     G+   +LE + LPG+ A
Sbjct: 366 AVSQLGIADQFTHISTGGGASLEYLEGKTLPGIAA 400


>sp|Q7NI70|PGK_GLOVI Phosphoglycerate kinase OS=Gloeobacter
           violaceus GN=pgk PE=3 SV=1
          Length = 407

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 20/69 (28%), Positives = 32/69 (46%)
 Frame = -2

Query: 345 LPNFVILVASTA*FAAKHPKIFLTGTQNKKSG*IAKSKLGIVEQQAHRRRNAGSFNHFLE 166
           LP F     + A   A+   + + G  +  S   A  K G+V++ +H     G+   FLE
Sbjct: 338 LPGFSKGTFAVAHALAESDNLSIVGGGDSAS---AAEKAGVVDKLSHVSTGGGASLEFLE 394

Query: 165 PRNLPGLVA 139
            + LPG+ A
Sbjct: 395 GKTLPGVAA 403


>sp|Q77372|GAG_HV1AN Gag polyprotein OS=Human immunodeficiency virus
           type 1 (isolate ANT70 group O) GN=gag PE=3 SV=3
          Length = 498

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 17/53 (32%), Positives = 22/53 (41%)
 Frame = -1

Query: 361 KRSPNPAKFRNFGCVNCLICG*AP*NLLDGHPKQEIRLNCKKQAWNCGAAGSQ 203
           +R  NP +    G + C  CG       +GH  +  R   KK  W CG  G Q
Sbjct: 383 QRGQNPIRK---GTIKCFNCG------KEGHIARNCRAPRKKGCWKCGQEGHQ 426


>sp|Q4V8B0|OXR1_RAT Oxidation resistance protein 1 OS=Rattus
           norvegicus GN=Oxr1 PE=1 SV=2
          Length = 758

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 17/36 (47%), Positives = 18/36 (50%)
 Frame = -3

Query: 110 RESAHINTPADAHQQQARG*NKQLEKEIHRLADFYC 3
           RES H   PADAH     G +   EK  HRL  F C
Sbjct: 439 RESKHRGAPADAH---GEGSSLLKEKRRHRLHKFLC 471


>sp|O09015|MXI1_RAT MAX-interacting protein 1 OS=Rattus norvegicus
           GN=Mxi1 PE=2 SV=1
          Length = 228

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -2

Query: 153 PGLVACKFVSARRMQRECTYKHASGCPPTTSPRIKQTTRERNSS 22
           P L A +F+  R  +REC + +AS  P   SPR++ +   R  S
Sbjct: 11  PMLEAAEFLERR--ERECEHGYASSFPSMPSPRLQHSKPPRRLS 52


>sp|A2BUH2|PGK_PROM5 Phosphoglycerate kinase OS=Prochlorococcus
           marinus (strain MIT 9515) GN=pgk PE=3 SV=1
          Length = 402

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 243 AKSKLGIVEQQAHRRRNAGSFNHFLEPRNLPGLVA 139
           A  K G+ E+ +H     G+    LE +NLPG+ A
Sbjct: 364 AVEKAGLAEKMSHISTGGGASLELLEGKNLPGVAA 398


>sp|A1WVV5|PGK_HALHL Phosphoglycerate kinase OS=Halorhodospira
           halophila (strain DSM 244 / SL1) GN=pgk PE=3 SV=1
          Length = 394

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -2

Query: 243 AKSKLGIVEQQAHRRRNAGSFNHFLEPRNLPGLVA 139
           A  + GI +Q ++     G+F  FLE R LPG+ A
Sbjct: 351 AVEQFGITDQVSYISTGGGAFLEFLEGRVLPGVAA 385
tr_hit_id Q8QDY9
Definition tr|Q8QDY9|Q8QDY9_9HIV1 Gag polyprotein (Fragment) OS=Human immunodeficiency virus 1
Align length 47
Score (bit) 33.5
E-value 5.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913817|Adiantum capillus-veneris mRNA, clone:
YMU001_000035_F07.
         (418 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q8QDY9|Q8QDY9_9HIV1 Gag polyprotein (Fragment) OS=Human immun...    33   5.4  
tr|Q8QDX0|Q8QDX0_9HIV1 Gag polyprotein OS=Human immunodeficiency...    33   5.4  

>tr|Q8QDY9|Q8QDY9_9HIV1 Gag polyprotein (Fragment) OS=Human
           immunodeficiency virus 1 GN=gag PE=4 SV=1
          Length = 219

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 17/47 (36%), Positives = 20/47 (42%)
 Frame = -1

Query: 343 AKFRNFGCVNCLICG*AP*NLLDGHPKQEIRLNCKKQAWNCGAAGSQ 203
           + FR    + C  CG       DGHP +  R   KK  W CG  G Q
Sbjct: 101 SNFRGPKRIKCFNCG------KDGHPARNCRAPRKKGCWKCGKEGHQ 141


>tr|Q8QDX0|Q8QDX0_9HIV1 Gag polyprotein OS=Human immunodeficiency
           virus 1 GN=gag PE=4 SV=1
          Length = 498

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 17/47 (36%), Positives = 20/47 (42%)
 Frame = -1

Query: 343 AKFRNFGCVNCLICG*AP*NLLDGHPKQEIRLNCKKQAWNCGAAGSQ 203
           + FR    + C  CG       DGHP +  R   KK  W CG  G Q
Sbjct: 380 SNFRGPKRIKCFNCG------KDGHPARNCRAPRKKGCWKCGKEGHQ 420