NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913821
Clone id YMU001_000035_F11
Library
Length 495
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000035_F11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTTTTTTTTTTTTTTTTTGAACTTTGTCAAGGTTATCTCCAATTAACCATGGCTGAAACA
AGCTATACAAGCAGATGTCCCATACGAATGCATATCCTGGACGATCGCTAGCAAGGTACT
CAAGAAAGAATGTCCACCGATCAGAGAAGTTTCCAAGACCCTCATCAGCCCTTCCCAGGA
AAAACCATAGTACTGAGATGAGACCCACTGCTCCGCATACGACACTCACTACTCTGGCAC
CGGAGACCATAACTTTCTGAACTCCACTTAATTCAAGCTTCACGGAGCCAGTTTTAGATA
GCACATCTTCATTGATCCTGTCTTCATGGTTGAGTCGGATTGCCATATATGGAATCAAGA
CAGTGTTAGTCAAAAACATTTGAATGCCCCATAAAGCCACCAAGGATCCACTATATCTTT
TCCGCCTTTCATCCGTGAACAGCATTGGTGCAAACATTATTGACCATCCCATGACGAGGT
TAAAAAGAGCCTCTG
■■Homology search results ■■ -
sp_hit_id P16389
Definition sp|P16389|KCNA2_HUMAN Potassium voltage-gated channel subfamily A member 2 OS=Homo sapiens
Align length 44
Score (bit) 30.4
E-value 4.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913821|Adiantum capillus-veneris mRNA, clone:
YMU001_000035_F11.
         (477 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P16389|KCNA2_HUMAN Potassium voltage-gated channel subfamily ...    30   4.2  
sp|Q8BXJ9|TMM62_MOUSE Transmembrane protein 62 OS=Mus musculus G...    30   7.2  

>sp|P16389|KCNA2_HUMAN Potassium voltage-gated channel subfamily A
           member 2 OS=Homo sapiens GN=KCNA2 PE=1 SV=2
          Length = 499

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 18/44 (40%), Positives = 21/44 (47%)
 Frame = +2

Query: 203 DTHYSGTGDHNFLNST*FKLHGASFR*HIFIDPVFMVESDCHIW 334
           D H SG   H + NST       SF      DP F+VE+ C IW
Sbjct: 194 DMHGSGVTFHTYSNSTIGYQQSTSFT-----DPFFIVETLCIIW 232


>sp|Q8BXJ9|TMM62_MOUSE Transmembrane protein 62 OS=Mus musculus
           GN=Tmem62 PE=2 SV=1
          Length = 643

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 18/59 (30%), Positives = 29/59 (49%)
 Frame = -3

Query: 184 LISVLWFFLGRADEGLGNFSDRWTFFLEYLASDRPGYAFVWDICLYSLFQPWLIGDNLD 8
           LI+  +       E LG F++  TF L  L+     Y  V  + LY++  PW +G+ +D
Sbjct: 448 LITFRYLAYPELKEPLG-FANMTTFSLHILSKINISYYSVLLLTLYTVLGPWFVGEIID 505
tr_hit_id A9NZU0
Definition tr|A9NZU0|A9NZU0_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 158
Score (bit) 176.0
E-value 7.0e-43
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913821|Adiantum capillus-veneris mRNA, clone:
YMU001_000035_F11.
         (477 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NZU0|A9NZU0_PICSI Putative uncharacterized protein OS=Picea...   176   7e-43
tr|A7P363|A7P363_VITVI Chromosome chr1 scaffold_5, whole genome ...   162   1e-38
tr|A5BV82|A5BV82_VITVI Putative uncharacterized protein OS=Vitis...   162   1e-38
tr|A9SS47|A9SS47_PHYPA Predicted protein OS=Physcomitrella paten...   154   3e-36
tr|Q94K74|Q94K74_ARATH Putative uncharacterized protein At3g2580...   151   2e-35
tr|Q7XTF0|Q7XTF0_ORYSJ Os04g0462300 protein OS=Oryza sativa subs...   150   3e-35
tr|B8AUR5|B8AUR5_ORYSI Putative uncharacterized protein OS=Oryza...   150   3e-35
tr|Q9LRZ8|Q9LRZ8_ARATH Genomic DNA, chromosome 3, TAC clone:K13N...    93   6e-18
tr|Q6MWD5|Q6MWD5_ORYSJ B1358B12.10 protein OS=Oryza sativa subsp...    89   1e-16
tr|A3AUK1|A3AUK1_ORYSJ Putative uncharacterized protein OS=Oryza...    87   4e-16
tr|B7JY52|B7JY52_SYNP8 Putative uncharacterized protein OS=Synec...    83   6e-15
tr|B4BW80|B4BW80_9CHRO Putative uncharacterized protein OS=Cyano...    83   6e-15
tr|A3IU80|A3IU80_9CHRO Putative uncharacterized protein OS=Cyano...    75   2e-12
tr|B1WZA3|B1WZA3_CYAA5 Putative uncharacterized protein OS=Cyano...    74   4e-12
tr|B4VXL5|B4VXL5_9CYAN Putative uncharacterized protein OS=Micro...    74   4e-12
tr|B7FTX9|B7FTX9_PHATR Predicted protein OS=Phaeodactylum tricor...    74   4e-12
tr|Q113D7|Q113D7_TRIEI Putative uncharacterized protein OS=Trich...    73   8e-12
tr|B4B6G9|B4B6G9_9CHRO Putative uncharacterized protein OS=Cyano...    72   1e-11
tr|B7KK63|B7KK63_9CHRO Putative uncharacterized protein OS=Cyano...    70   4e-11
tr|Q4BYT3|Q4BYT3_CROWT Putative uncharacterized protein OS=Croco...    66   8e-10
tr|A0YTX0|A0YTX0_9CYAN Putative uncharacterized protein OS=Lyngb...    65   2e-09
tr|B1XMN1|B1XMN1_SYNP2 Conserved hypothetical membrane protein O...    61   2e-08
tr|A4RY41|A4RY41_OSTLU Predicted protein OS=Ostreococcus lucimar...    60   5e-08
tr|B0C5G5|B0C5G5_ACAM1 Putative uncharacterized protein OS=Acary...    55   2e-06
tr|Q018F1|Q018F1_OSTTA Homology to unknown gene OS=Ostreococcus ...    54   3e-06
tr|A8I8X5|A8I8X5_CHLRE Predicted protein OS=Chlamydomonas reinha...    51   3e-05
tr|B4B853|B4B853_9CHRO Putative uncharacterized protein OS=Cyano...    34   3.2  
tr|B2J939|B2J939_NOSP7 Putative uncharacterized protein OS=Nosto...    33   7.1  

>tr|A9NZU0|A9NZU0_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 354

 Score =  176 bits (445), Expect = 7e-43
 Identities = 87/158 (55%), Positives = 106/158 (67%)
 Frame = -3

Query: 475 EALFNLVMGWSIMFAPMLFTDERRKRYSGSLVALWGIQMFLTNTVLIPYMAIRLNHEDRI 296
           EALFN V+ W++MFAP+LFTD +R R+ GSL ALW +QMFLTNT+LIPYMAIRL      
Sbjct: 172 EALFNFVIAWTMMFAPLLFTDCKRNRFGGSLEALWVVQMFLTNTLLIPYMAIRLGAS--- 228

Query: 295 NEDVLSKTGSVKLELSGVQKXXXXXXXXXXXXXXXXGLISVLWFFLGRADEGLGNFSDRW 116
               LSK+  VK   SG+Q                 G I ++W   GR D G G+ +DRW
Sbjct: 229 RSSSLSKSQKVK---SGIQLVMTSGARIIGTLGGLVGFICIIWVLFGRDDAGFGSLADRW 285

Query: 115 TFFLEYLASDRPGYAFVWDICLYSLFQPWLIGDNLDKV 2
            FFL+Y+ SDRPGYAF+WDICLYS+FQPWLIG+NL  V
Sbjct: 286 DFFLDYIKSDRPGYAFIWDICLYSIFQPWLIGNNLQNV 323


>tr|A7P363|A7P363_VITVI Chromosome chr1 scaffold_5, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00030317001
           PE=4 SV=1
          Length = 254

 Score =  162 bits (409), Expect = 1e-38
 Identities = 84/159 (52%), Positives = 98/159 (61%), Gaps = 1/159 (0%)
 Frame = -3

Query: 475 EALFNLVMGWSIMFAPMLFTDERRKRYSGSLVALWGIQMFLTNTVLIPYMAIRLNHED-R 299
           E LFN V+GW+ MFAP+LFTD +R RY GSL  LWG QMFLTNT LIPYMAIRLN ED  
Sbjct: 74  EGLFNFVIGWTFMFAPLLFTDYKRDRYKGSLDVLWGFQMFLTNTFLIPYMAIRLNDEDAE 133

Query: 298 INEDVLSKTGSVKLELSGVQKXXXXXXXXXXXXXXXXGLISVLWFFLGRADEGLGNFSDR 119
                 S+ GSV +  + +                   LIS LW F GR D   G+ +DR
Sbjct: 134 YIPRKPSRLGSVMIHGAPI----------VGLIGGAVCLISALWAFFGRQDSNFGSIADR 183

Query: 118 WTFFLEYLASDRPGYAFVWDICLYSLFQPWLIGDNLDKV 2
             F + YL S+R  YAF+WDICLY +FQPWLIGDNL  V
Sbjct: 184 LEFLVSYLGSERLAYAFIWDICLYIIFQPWLIGDNLQNV 222


>tr|A5BV82|A5BV82_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_004016 PE=4 SV=1
          Length = 349

 Score =  162 bits (409), Expect = 1e-38
 Identities = 84/159 (52%), Positives = 98/159 (61%), Gaps = 1/159 (0%)
 Frame = -3

Query: 475 EALFNLVMGWSIMFAPMLFTDERRKRYSGSLVALWGIQMFLTNTVLIPYMAIRLNHED-R 299
           E LFN V+GW+ MFAP+LFTD +R RY GSL  LWG QMFLTNT LIPYMAIRLN ED  
Sbjct: 169 EGLFNFVIGWTFMFAPLLFTDYKRDRYKGSLDVLWGFQMFLTNTFLIPYMAIRLNDEDAE 228

Query: 298 INEDVLSKTGSVKLELSGVQKXXXXXXXXXXXXXXXXGLISVLWFFLGRADEGLGNFSDR 119
                 S+ GSV +  + +                   LIS LW F GR D   G+ +DR
Sbjct: 229 YIPRKPSRLGSVMIHGAPI----------VGLIGGAVCLISALWAFFGRQDSNFGSIADR 278

Query: 118 WTFFLEYLASDRPGYAFVWDICLYSLFQPWLIGDNLDKV 2
             F + YL S+R  YAF+WDICLY +FQPWLIGDNL  V
Sbjct: 279 LEFLVSYLGSERLAYAFIWDICLYIIFQPWLIGDNLQNV 317


>tr|A9SS47|A9SS47_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_215146 PE=4 SV=1
          Length = 268

 Score =  154 bits (388), Expect = 3e-36
 Identities = 73/160 (45%), Positives = 105/160 (65%), Gaps = 2/160 (1%)
 Frame = -3

Query: 475 EALFNLVMGWSIMFAPMLFTDERRKRYSGSLVALWGIQMFLTNTVLIPYMAIRLNHEDRI 296
           EALFN V+GW+++FAP++FTD +R R+ GSL   W   MFLTNT LIPYMAIRL    +I
Sbjct: 83  EALFNFVLGWALLFAPLIFTDRKRDRFPGSLDVFWLASMFLTNTFLIPYMAIRLR---KI 139

Query: 295 NEDVLSKTGSVKLELSGVQKXXXXXXXXXXXXXXXXG--LISVLWFFLGRADEGLGNFSD 122
            E          +E +G+Q+                   L+S++WF +GR+ EG G+ +D
Sbjct: 140 PEP------QKPMESTGLQRAFTGEKGSRWVAATGAAVGLLSIVWFAIGRSGEGYGDLAD 193

Query: 121 RWTFFLEYLASDRPGYAFVWDICLYSLFQPWLIGDNLDKV 2
           RW+++++ L+ DRP YAF+WD+C Y++FQPWL+GDNL+ V
Sbjct: 194 RWSYWVDTLSKDRPTYAFIWDLCCYTVFQPWLVGDNLENV 233


>tr|Q94K74|Q94K74_ARATH Putative uncharacterized protein At3g25805
           OS=Arabidopsis thaliana GN=At3g25805 PE=2 SV=1
          Length = 335

 Score =  151 bits (381), Expect = 2e-35
 Identities = 76/158 (48%), Positives = 94/158 (59%)
 Frame = -3

Query: 475 EALFNLVMGWSIMFAPMLFTDERRKRYSGSLVALWGIQMFLTNTVLIPYMAIRLNHEDRI 296
           E LFN V+ W++MFAP+L+TD +R RY  SL  LW + MFLTNT LIPYMA+RLN  D  
Sbjct: 154 EGLFNFVIAWTLMFAPLLYTDRKRNRYKSSLDVLWSLMMFLTNTFLIPYMALRLNDADP- 212

Query: 295 NEDVLSKTGSVKLELSGVQKXXXXXXXXXXXXXXXXGLISVLWFFLGRADEGLGNFSDRW 116
            +D  SK        S + +                 LIS LW   GRAD   G   DRW
Sbjct: 213 -DDKPSKR-------SQLGEVMTKGAPIVGLTGATVCLISALWSLYGRADGDFGGIMDRW 264

Query: 115 TFFLEYLASDRPGYAFVWDICLYSLFQPWLIGDNLDKV 2
            + + YL S+R  YAF+WDICLY++FQPWLIG+NL  V
Sbjct: 265 QYLIGYLGSERLAYAFIWDICLYTIFQPWLIGENLQNV 302


>tr|Q7XTF0|Q7XTF0_ORYSJ Os04g0462300 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0072F16.18 PE=4 SV=2
          Length = 340

 Score =  150 bits (379), Expect = 3e-35
 Identities = 75/159 (47%), Positives = 97/159 (61%), Gaps = 1/159 (0%)
 Frame = -3

Query: 475 EALFNLVMGWSIMFAPMLFTDERRKRYSGSLVALWGIQMFLTNTVLIPYMAIRLNHEDR- 299
           E LFN V+ W+++FAP+LFTD RR R+ GSL  LWG QMFLTNT LIPYMAIRLN  D+ 
Sbjct: 161 EGLFNFVIAWTLLFAPLLFTDSRRDRFKGSLDLLWGFQMFLTNTFLIPYMAIRLNDPDKD 220

Query: 298 INEDVLSKTGSVKLELSGVQKXXXXXXXXXXXXXXXXGLISVLWFFLGRADEGLGNFSDR 119
            +    SK GSV +  + +                   ++S+ W   GRAD   G  ++R
Sbjct: 221 KSPPQTSKLGSVMVRGAPI----------VGLTGGLVCILSIAWALFGRADASFGGIAER 270

Query: 118 WTFFLEYLASDRPGYAFVWDICLYSLFQPWLIGDNLDKV 2
           W +   Y+ S+R  YAF+WDI LYS+FQPWLI DN+  V
Sbjct: 271 WQYVQSYVFSERLAYAFLWDILLYSIFQPWLIADNIQNV 309


>tr|B8AUR5|B8AUR5_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_16182 PE=4 SV=1
          Length = 340

 Score =  150 bits (379), Expect = 3e-35
 Identities = 75/159 (47%), Positives = 97/159 (61%), Gaps = 1/159 (0%)
 Frame = -3

Query: 475 EALFNLVMGWSIMFAPMLFTDERRKRYSGSLVALWGIQMFLTNTVLIPYMAIRLNHEDR- 299
           E LFN V+ W+++FAP+LFTD RR R+ GSL  LWG QMFLTNT LIPYMAIRLN  D+ 
Sbjct: 161 EGLFNFVIAWTLLFAPLLFTDSRRDRFKGSLDLLWGFQMFLTNTFLIPYMAIRLNDPDKD 220

Query: 298 INEDVLSKTGSVKLELSGVQKXXXXXXXXXXXXXXXXGLISVLWFFLGRADEGLGNFSDR 119
            +    SK GSV +  + +                   ++S+ W   GRAD   G  ++R
Sbjct: 221 KSPPQTSKLGSVMVRGAPI----------VGLTGGLVCILSIAWALFGRADASFGGIAER 270

Query: 118 WTFFLEYLASDRPGYAFVWDICLYSLFQPWLIGDNLDKV 2
           W +   Y+ S+R  YAF+WDI LYS+FQPWLI DN+  V
Sbjct: 271 WQYVQSYVFSERLAYAFLWDILLYSIFQPWLIADNIQNV 309


>tr|Q9LRZ8|Q9LRZ8_ARATH Genomic DNA, chromosome 3, TAC clone:K13N2
           OS=Arabidopsis thaliana PE=4 SV=1
          Length = 143

 Score = 93.2 bits (230), Expect = 6e-18
 Identities = 51/118 (43%), Positives = 62/118 (52%)
 Frame = -3

Query: 355 LTNTVLIPYMAIRLNHEDRINEDVLSKTGSVKLELSGVQKXXXXXXXXXXXXXXXXGLIS 176
           L    LIPYMA+RLN  D   +D  SK        S + +                 LIS
Sbjct: 2   LQTAFLIPYMALRLNDADP--DDKPSKR-------SQLGEVMTKGAPIVGLTGATVCLIS 52

Query: 175 VLWFFLGRADEGLGNFSDRWTFFLEYLASDRPGYAFVWDICLYSLFQPWLIGDNLDKV 2
            LW   GRAD   G   DRW + + YL S+R  YAF+WDICLY++FQPWLIG+NL  V
Sbjct: 53  ALWSLYGRADGDFGGIMDRWQYLIGYLGSERLAYAFIWDICLYTIFQPWLIGENLQNV 110


>tr|Q6MWD5|Q6MWD5_ORYSJ B1358B12.10 protein OS=Oryza sativa subsp.
           japonica GN=B1358B12.10 PE=4 SV=1
          Length = 285

 Score = 88.6 bits (218), Expect = 1e-16
 Identities = 47/119 (39%), Positives = 63/119 (52%), Gaps = 1/119 (0%)
 Frame = -3

Query: 355 LTNTVLIPYMAIRLNHEDRINEDV-LSKTGSVKLELSGVQKXXXXXXXXXXXXXXXXGLI 179
           L +  LIPYMAIRLN  D+       SK GSV +  + +                   ++
Sbjct: 146 LNSAFLIPYMAIRLNDPDKDKSPPQTSKLGSVMVRGAPI----------VGLTGGLVCIL 195

Query: 178 SVLWFFLGRADEGLGNFSDRWTFFLEYLASDRPGYAFVWDICLYSLFQPWLIGDNLDKV 2
           S+ W   GRAD   G  ++RW +   Y+ S+R  YAF+WDI LYS+FQPWLI DN+  V
Sbjct: 196 SIAWALFGRADASFGGIAERWQYVQSYVFSERLAYAFLWDILLYSIFQPWLIADNIQNV 254


>tr|A3AUK1|A3AUK1_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_014473 PE=4 SV=1
          Length = 315

 Score = 87.0 bits (214), Expect = 4e-16
 Identities = 46/114 (40%), Positives = 61/114 (53%), Gaps = 1/114 (0%)
 Frame = -3

Query: 340 LIPYMAIRLNHEDRINEDV-LSKTGSVKLELSGVQKXXXXXXXXXXXXXXXXGLISVLWF 164
           LIPYMAIRLN  D+       SK GSV +  + +                   ++S+ W 
Sbjct: 181 LIPYMAIRLNDPDKDKSPPQTSKLGSVMVRGAPI----------VGLTGGLVCILSIAWA 230

Query: 163 FLGRADEGLGNFSDRWTFFLEYLASDRPGYAFVWDICLYSLFQPWLIGDNLDKV 2
             GRAD   G  ++RW +   Y+ S+R  YAF+WDI LYS+FQPWLI DN+  V
Sbjct: 231 LFGRADASFGGIAERWQYVQSYVFSERLAYAFLWDILLYSIFQPWLIADNIQNV 284