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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913826
Clone id YMU001_000035_G06
Library
Length 467
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000035_G06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CGAGCAGAAGGAATATGTGGCTGTGGAACGGGTCCTTCGAGTGGTGTTCTTGGATCCCCA
AAGCCATTCTTCTGAAATAGAGAAGCTAAAAAAGCGTCTAGCTGAAGCAGAGGCAGCTCC
GCAAGCCCGTAAAAAGCCTTCTGAAGATAGGGTACAGAAGACCGTTGCAGCAGGCGGAGT
TCTAGATGAATGGAAGGAGCAGCAGCGGGAGAAGCGGCTAGCCAAACAGCAAACTGAAGG
CATAGAATCCCCATAGACCTCACCTCTGCATGAAGATTACTTGTAATATGAATGTTGTAT
TATAATTTTGGTAGTTTCTGATCGACCGAGGGCGTTTGAAAGCGCTTAACGTCACTGTGA
TATATGGGAGCACTTGTAATGATCCAAAAGCTAAGCTAGTATCACGCGTTGGAATGTATT
TTTGAAGATTTGTGCTACCCAGTTTCTGAAGGTGGGGAGCATGATTT
■■Homology search results ■■ -
sp_hit_id Q65SK3
Definition sp|Q65SK3|SYS_MANSM Seryl-tRNA synthetase OS=Mannheimia succiniciproducens (strain MBEL55E)
Align length 65
Score (bit) 29.3
E-value 8.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913826|Adiantum capillus-veneris mRNA, clone:
YMU001_000035_G06.
         (467 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q65SK3|SYS_MANSM Seryl-tRNA synthetase OS=Mannheimia succinic...    29   8.9  

>sp|Q65SK3|SYS_MANSM Seryl-tRNA synthetase OS=Mannheimia
           succiniciproducens (strain MBEL55E) GN=serS PE=3 SV=1
          Length = 430

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 22/65 (33%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
 Frame = -1

Query: 191 IHLELRLLQRSSVPYL--QKAFYGLAELPLLQLDAFLASLFQKNGFGDPRTPLEGPVPQP 18
           +H E      + VPYL      YG  +LP    D F              TPLEG VP  
Sbjct: 185 LHTEQHGYTETYVPYLVNHTTLYGTGQLPKFGEDLFHT------------TPLEGEVPYA 232

Query: 17  HIPSA 3
            IP+A
Sbjct: 233 LIPTA 237
tr_hit_id B6TP74
Definition tr|B6TP74|B6TP74_MAIZE Structural molecule OS=Zea mays
Align length 83
Score (bit) 69.7
E-value 7.0e-11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913826|Adiantum capillus-veneris mRNA, clone:
YMU001_000035_G06.
         (467 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6TP74|B6TP74_MAIZE Structural molecule OS=Zea mays PE=2 SV=1       70   7e-11
tr|B4FUC2|B4FUC2_MAIZE Putative uncharacterized protein OS=Zea m...    70   7e-11
tr|Q6YZ10|Q6YZ10_ORYSJ Os08g0141300 protein OS=Oryza sativa subs...    68   2e-10
tr|B8BAM7|B8BAM7_ORYSI Putative uncharacterized protein OS=Oryza...    68   2e-10
tr|B7FKV5|B7FKV5_MEDTR Putative uncharacterized protein OS=Medic...    68   2e-10
tr|A3BPI9|A3BPI9_ORYSJ Putative uncharacterized protein OS=Oryza...    68   2e-10
tr|A5BZK7|A5BZK7_VITVI Putative uncharacterized protein (Chromos...    68   3e-10
tr|A7R2L7|A7R2L7_VITVI Chromosome undetermined scaffold_434, who...    67   6e-10
tr|A9P9P0|A9P9P0_POPTR Putative uncharacterized protein OS=Popul...    66   8e-10
tr|A9P9L6|A9P9L6_POPTR Putative uncharacterized protein OS=Popul...    66   8e-10
tr|Q2HTV7|Q2HTV7_MEDTR Major sperm protein OS=Medicago truncatul...    66   1e-09
tr|Q1ECE0|Q1ECE0_ARATH At5g54110 OS=Arabidopsis thaliana PE=2 SV=1     65   2e-09
tr|P93040|P93040_ARATH Membrane associated protein OS=Arabidopsi...    65   2e-09
tr|A9NRI2|A9NRI2_PICSI Putative uncharacterized protein OS=Picea...    65   2e-09
tr|Q8VYN2|Q8VYN2_ARATH Putative membrane associated protein OS=A...    64   3e-09
tr|O65410|O65410_ARATH Putative membrane associated protein OS=A...    64   3e-09
tr|A5ARH9|A5ARH9_VITVI Putative uncharacterized protein (Chromos...    63   8e-09
tr|A9TMJ2|A9TMJ2_PHYPA Predicted protein OS=Physcomitrella paten...    60   7e-08
tr|A9RUB0|A9RUB0_PHYPA Predicted protein OS=Physcomitrella paten...    60   7e-08
tr|A9NUN7|A9NUN7_PICSI Putative uncharacterized protein OS=Picea...    59   9e-08
tr|Q6Z407|Q6Z407_ORYSJ Os07g0558800 protein OS=Oryza sativa subs...    59   1e-07
tr|B8LM44|B8LM44_PICSI Putative uncharacterized protein OS=Picea...    59   1e-07
tr|A3BL42|A3BL42_ORYSJ Putative uncharacterized protein OS=Oryza...    59   1e-07
tr|A2YML4|A2YML4_ORYSI Putative uncharacterized protein OS=Oryza...    59   1e-07
tr|Q9S9T2|Q9S9T2_ARATH T32N4.12 protein (AT4g05060 protein) OS=A...    59   2e-07
tr|Q8LPQ7|Q8LPQ7_ARATH AT4g05060/T32N4_12 OS=Arabidopsis thalian...    59   2e-07
tr|Q8LAZ8|Q8LAZ8_ARATH Membrane associated protein-like protein ...    59   2e-07
tr|Q56X74|Q56X74_ARATH Putative uncharacterized protein At4g0506...    59   2e-07
tr|A5BGT0|A5BGT0_VITVI Putative uncharacterized protein OS=Vitis...    57   4e-07
tr|A9T570|A9T570_PHYPA Predicted protein OS=Physcomitrella paten...    54   4e-06

>tr|B6TP74|B6TP74_MAIZE Structural molecule OS=Zea mays PE=2 SV=1
          Length = 229

 Score = 69.7 bits (169), Expect = 7e-11
 Identities = 39/83 (46%), Positives = 51/83 (61%)
 Frame = +2

Query: 2   EQKEYVAVERVLRVVFLDPQSHSSXXXXXXXXXXXXXXXPQARKKPSEDRVQKTVAAGGV 181
           EQK+ VAVE++LRVVFLD +  S                 +ARKKP ED   + V  G V
Sbjct: 147 EQKDQVAVEQILRVVFLDAERPSPQMDKLKRQLAEAEAALEARKKPPEDNGTRIVGEGLV 206

Query: 182 LDEWKEQQREKRLAKQQTEGIES 250
           +DEWKE +RE+ LA+QQ EG++S
Sbjct: 207 IDEWKE-RRERYLARQQEEGVDS 228


>tr|B4FUC2|B4FUC2_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 228

 Score = 69.7 bits (169), Expect = 7e-11
 Identities = 39/83 (46%), Positives = 51/83 (61%)
 Frame = +2

Query: 2   EQKEYVAVERVLRVVFLDPQSHSSXXXXXXXXXXXXXXXPQARKKPSEDRVQKTVAAGGV 181
           EQK+ VAVE++LRVVFLD +  S                 +ARKKP ED   + V  G V
Sbjct: 146 EQKDQVAVEQILRVVFLDAERPSPQMDKLKRQLAEAEAALEARKKPPEDNGPRIVGEGLV 205

Query: 182 LDEWKEQQREKRLAKQQTEGIES 250
           +DEWKE +RE+ LA+QQ EG++S
Sbjct: 206 IDEWKE-RRERYLARQQIEGVDS 227


>tr|Q6YZ10|Q6YZ10_ORYSJ Os08g0141300 protein OS=Oryza sativa subsp.
           japonica GN=P0473D02.15 PE=2 SV=1
          Length = 233

 Score = 68.2 bits (165), Expect = 2e-10
 Identities = 38/83 (45%), Positives = 50/83 (60%)
 Frame = +2

Query: 2   EQKEYVAVERVLRVVFLDPQSHSSXXXXXXXXXXXXXXXPQARKKPSEDRVQKTVAAGGV 181
           EQK  VAVE++LRVVFLD +  +                 +ARKKP ED   + V  G V
Sbjct: 151 EQKNQVAVEQILRVVFLDAERQTPQMDKLKRQLAEAEAALEARKKPPEDTGPRIVGEGLV 210

Query: 182 LDEWKEQQREKRLAKQQTEGIES 250
           +DEWKE +RE+ LA+QQ EG++S
Sbjct: 211 IDEWKE-RRERYLARQQIEGVDS 232


>tr|B8BAM7|B8BAM7_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_27767 PE=4 SV=1
          Length = 250

 Score = 68.2 bits (165), Expect = 2e-10
 Identities = 38/83 (45%), Positives = 50/83 (60%)
 Frame = +2

Query: 2   EQKEYVAVERVLRVVFLDPQSHSSXXXXXXXXXXXXXXXPQARKKPSEDRVQKTVAAGGV 181
           EQK  VAVE++LRVVFLD +  +                 +ARKKP ED   + V  G V
Sbjct: 168 EQKNQVAVEQILRVVFLDAERQTPQMDKLKRQLAEAEAALEARKKPPEDTGPRIVGEGLV 227

Query: 182 LDEWKEQQREKRLAKQQTEGIES 250
           +DEWKE +RE+ LA+QQ EG++S
Sbjct: 228 IDEWKE-RRERYLARQQIEGVDS 249


>tr|B7FKV5|B7FKV5_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 271

 Score = 68.2 bits (165), Expect = 2e-10
 Identities = 37/81 (45%), Positives = 49/81 (60%)
 Frame = +2

Query: 2   EQKEYVAVERVLRVVFLDPQSHSSXXXXXXXXXXXXXXXPQARKKPSEDRVQKTVAAGGV 181
           EQ++ VAVE++LRVVFLDP  +S                 +ARKKP E+   +    G V
Sbjct: 187 EQRDQVAVEQILRVVFLDPDRNSPAMDKLKRQLAEAEAALEARKKPPEETGPRVAGEGLV 246

Query: 182 LDEWKEQQREKRLAKQQTEGI 244
           +DEWKE +RE+ LAKQQ EG+
Sbjct: 247 IDEWKE-RRERYLAKQQVEGV 266


>tr|A3BPI9|A3BPI9_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_024961 PE=4 SV=1
          Length = 325

 Score = 68.2 bits (165), Expect = 2e-10
 Identities = 38/83 (45%), Positives = 50/83 (60%)
 Frame = +2

Query: 2   EQKEYVAVERVLRVVFLDPQSHSSXXXXXXXXXXXXXXXPQARKKPSEDRVQKTVAAGGV 181
           EQK  VAVE++LRVVFLD +  +                 +ARKKP ED   + V  G V
Sbjct: 243 EQKNQVAVEQILRVVFLDAERQTPQMDKLKRQLAEAEAALEARKKPPEDTGPRIVGEGLV 302

Query: 182 LDEWKEQQREKRLAKQQTEGIES 250
           +DEWKE +RE+ LA+QQ EG++S
Sbjct: 303 IDEWKE-RRERYLARQQIEGVDS 324


>tr|A5BZK7|A5BZK7_VITVI Putative uncharacterized protein (Chromosome
           chr12 scaffold_47, whole genome shotgun sequence)
           OS=Vitis vinifera GN=GSVIVT00029184001 PE=4 SV=1
          Length = 240

 Score = 67.8 bits (164), Expect = 3e-10
 Identities = 39/83 (46%), Positives = 50/83 (60%)
 Frame = +2

Query: 2   EQKEYVAVERVLRVVFLDPQSHSSXXXXXXXXXXXXXXXPQARKKPSEDRVQKTVAAGGV 181
           EQK+ VA E++LRVVFLD +  S                 +ARKKP ED   + V  G V
Sbjct: 158 EQKDQVAEEQILRVVFLDTERPSPPLEKLKRQLAEAEAALEARKKPPEDTGPRIVGEGLV 217

Query: 182 LDEWKEQQREKRLAKQQTEGIES 250
           +DEWKE +RE+ LA+QQ EGI+S
Sbjct: 218 IDEWKE-RRERYLARQQVEGIDS 239


>tr|A7R2L7|A7R2L7_VITVI Chromosome undetermined scaffold_434, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00013092001 PE=4 SV=1
          Length = 264

 Score = 66.6 bits (161), Expect = 6e-10
 Identities = 37/83 (44%), Positives = 50/83 (60%)
 Frame = +2

Query: 2   EQKEYVAVERVLRVVFLDPQSHSSXXXXXXXXXXXXXXXPQARKKPSEDRVQKTVAAGGV 181
           E K+ VAVE++LRVVFLD +  S                 +ARKKP ED   + +  G V
Sbjct: 182 ELKDQVAVEQILRVVFLDVERPSPALDKLKRQLAEAEAAVEARKKPPEDAGPRIIGEGLV 241

Query: 182 LDEWKEQQREKRLAKQQTEGIES 250
           +DEWKE +RE+ LA+QQ EG++S
Sbjct: 242 IDEWKE-RRERYLARQQVEGVDS 263


>tr|A9P9P0|A9P9P0_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 264

 Score = 66.2 bits (160), Expect = 8e-10
 Identities = 37/79 (46%), Positives = 48/79 (60%)
 Frame = +2

Query: 2   EQKEYVAVERVLRVVFLDPQSHSSXXXXXXXXXXXXXXXPQARKKPSEDRVQKTVAAGGV 181
           EQK+ VAVE++LRV+FLDP+  S                 +ARKKP ED   + V  G V
Sbjct: 183 EQKDQVAVEQILRVIFLDPECPSPALEKLKRQLAEAEAELEARKKPPEDAGPRVVNEGLV 242

Query: 182 LDEWKEQQREKRLAKQQTE 238
           +DEWKE +RE+ LA+QQ E
Sbjct: 243 IDEWKE-RRERYLARQQVE 260


>tr|A9P9L6|A9P9L6_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 264

 Score = 66.2 bits (160), Expect = 8e-10
 Identities = 37/79 (46%), Positives = 48/79 (60%)
 Frame = +2

Query: 2   EQKEYVAVERVLRVVFLDPQSHSSXXXXXXXXXXXXXXXPQARKKPSEDRVQKTVAAGGV 181
           EQK+ VAVE++LRV+FLDP+  S                 +ARKKP ED   + V  G V
Sbjct: 183 EQKDQVAVEQILRVIFLDPECPSPALEKLKRQLAEAEAELEARKKPPEDAGPRVVNEGLV 242

Query: 182 LDEWKEQQREKRLAKQQTE 238
           +DEWKE +RE+ LA+QQ E
Sbjct: 243 IDEWKE-RRERYLARQQVE 260