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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913850
Clone id YMU001_000037_A12
Library
Length 543
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000037_A12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TAACCTCCAAGAAATTGTTGGCTTTTAGCCATAAGCTTCCAAAAGAGTACACCACAGCTA
CAGGAGTGCTATCCAGCAGAATCCTAAGGGGTGGCATAGGTCATAACTTCAAGCTTTCAA
TGAACCCAAAAAAATATTGAGCTTGGATTTCTCTTAGAAAAAAAATAAAGAGTGTCTCCA
ACAAACTGTTGGAAAGAGGCTGTTGAAAGCACTTCACCATAAGCATACAGCCATAAAAGA
AGGGTTATCTGATCACCAACACTCCAGCAATTGTGTACAAGGGGTTAGGAAAGAGCAACC
TGCAAATGCTTGTGTTCAAAATAGGTTGAAGGGGAAGCCATCAACAGGATGCACAAGGTA
TGTAACCAAGAGCGCCACAAACATGAGGGCATAGGCAATGCCAAGGTCAATTGTGGTTCC
GTCACTGGTCGGGGAAGGAGCAGGAGCCATGGACGGCTGGCCGTGCACTGCGTTCTGCAG
AAGGAAAAGCAGGAAGACAAAGAAGAGGAGGGAGAGCTTGGAGTACGCCATAGCCAGGTC
CCT
■■Homology search results ■■ -
sp_hit_id Q9M373
Definition sp|Q9M373|AGP20_ARATH Arabinogalactan peptide 20 OS=Arabidopsis thaliana
Align length 41
Score (bit) 66.6
E-value 7.0e-11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913850|Adiantum capillus-veneris mRNA, clone:
YMU001_000037_A12.
         (543 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9M373|AGP20_ARATH Arabinogalactan peptide 20 OS=Arabidopsis ...    67   7e-11
sp|O82337|AGP16_ARATH Arabinogalactan peptide 16 OS=Arabidopsis ...    65   2e-10
sp|Q9FK16|AGP22_ARATH Arabinogalactan peptide 22 OS=Arabidopsis ...    55   3e-07
sp|Q9M9E1|PDR12_ARATH Pleiotropic drug resistance protein 12 OS=...    30   9.9  
sp|P56746|CLD15_HUMAN Claudin-15 OS=Homo sapiens GN=CLDN15 PE=2 ...    30   9.9  

>sp|Q9M373|AGP20_ARATH Arabinogalactan peptide 20 OS=Arabidopsis
           thaliana GN=AGP20 PE=3 SV=1
          Length = 74

 Score = 66.6 bits (161), Expect = 7e-11
 Identities = 30/41 (73%), Positives = 36/41 (87%)
 Frame = -1

Query: 462 GQPSMAPAPSPTSDGTTIDLGIAYALMFVALLVTYLVHPVD 340
           G  S+APAPSPTSDGT+ID GIAY LM VAL++TYL+HP+D
Sbjct: 25  GAQSLAPAPSPTSDGTSIDQGIAYLLMVVALVLTYLIHPLD 65


>sp|O82337|AGP16_ARATH Arabinogalactan peptide 16 OS=Arabidopsis
           thaliana GN=AGP16 PE=1 SV=1
          Length = 73

 Score = 65.5 bits (158), Expect = 2e-10
 Identities = 29/41 (70%), Positives = 36/41 (87%)
 Frame = -1

Query: 462 GQPSMAPAPSPTSDGTTIDLGIAYALMFVALLVTYLVHPVD 340
           G  S+APAP+PTSDGT+ID GIAY LM VAL++TYL+HP+D
Sbjct: 25  GAQSLAPAPAPTSDGTSIDQGIAYLLMVVALVLTYLIHPLD 65


>sp|Q9FK16|AGP22_ARATH Arabinogalactan peptide 22 OS=Arabidopsis
           thaliana GN=AGP22 PE=3 SV=1
          Length = 63

 Score = 54.7 bits (130), Expect = 3e-07
 Identities = 24/35 (68%), Positives = 29/35 (82%)
 Frame = -1

Query: 453 SMAPAPSPTSDGTTIDLGIAYALMFVALLVTYLVH 349
           S +PAP+PTSDGT+ID GIAY LM VAL +TY +H
Sbjct: 29  SSSPAPAPTSDGTSIDQGIAYVLMMVALALTYFIH 63


>sp|Q9M9E1|PDR12_ARATH Pleiotropic drug resistance protein 12
            OS=Arabidopsis thaliana GN=PDR12 PE=2 SV=1
          Length = 1423

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +3

Query: 396  QCQGQLWFRHWSGKEQEPWTAGRAL 470
            QC   LW +HWS     P+TA R L
Sbjct: 1151 QCMASLWKQHWSYWRNPPYTAVRFL 1175


>sp|P56746|CLD15_HUMAN Claudin-15 OS=Homo sapiens GN=CLDN15 PE=2
           SV=1
          Length = 228

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
 Frame = -2

Query: 410 LTLALPMPSCLWR-SWLHTLCILLMASPSTYFEHKHLQVALS*PLVHNCWSVGDQITLLL 234
           L L + +P+  WR S +H   I    + +T FE+     A     V+NCW     + L  
Sbjct: 18  LMLGVTLPNSYWRVSTVHGNVI----TTNTIFENLWFSCATDSLGVYNCWEFPSMLALSG 73

Query: 233 WLYAYGEVLSTASFQQFVG 177
           ++ A   ++ TA    F+G
Sbjct: 74  YIQACRALMITAILLGFLG 92
tr_hit_id A9NL94
Definition tr|A9NL94|A9NL94_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 45
Score (bit) 75.5
E-value 2.0e-12
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913850|Adiantum capillus-veneris mRNA, clone:
YMU001_000037_A12.
         (543 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NL94|A9NL94_PICSI Putative uncharacterized protein OS=Picea...    75   2e-12
tr|B6TQ77|B6TQ77_MAIZE AGP16 OS=Zea mays PE=4 SV=1                     67   6e-10
tr|B6SR56|B6SR56_MAIZE AGP16 OS=Zea mays PE=4 SV=1                     67   6e-10
tr|B6SMF8|B6SMF8_MAIZE AGP16 OS=Zea mays PE=4 SV=1                     67   6e-10
tr|A5BTA7|A5BTA7_VITVI Putative uncharacterized protein (Chromos...    66   1e-09
tr|Q6ETY5|Q6ETY5_ORYSJ Os02g0264800 protein OS=Oryza sativa subs...    65   2e-09
tr|A9PBL3|A9PBL3_POPTR Putative uncharacterized protein OS=Popul...    65   2e-09
tr|A2X375|A2X375_ORYSI Putative uncharacterized protein OS=Oryza...    65   2e-09
tr|B8B358|B8B358_ORYSI Putative uncharacterized protein OS=Oryza...    64   4e-09
tr|Q94DB9|Q94DB9_ORYSJ cDNA clone:002-150-C11, full insert seque...    64   5e-09
tr|Q8S344|Q8S344_CAPAN Putative uncharacterized protein upa9 OS=...    64   5e-09
tr|A2WTE3|A2WTE3_ORYSI Putative uncharacterized protein OS=Oryza...    64   5e-09
tr|B6SPA0|B6SPA0_MAIZE AGP20 OS=Zea mays PE=4 SV=1                     64   7e-09
tr|B4FIH4|B4FIH4_MAIZE Putative uncharacterized protein OS=Zea m...    64   7e-09
tr|Q6I5W4|Q6I5W4_ORYSJ Os05g0217000 protein OS=Oryza sativa subs...    63   9e-09
tr|A2Y1M8|A2Y1M8_ORYSI Putative uncharacterized protein OS=Oryza...    63   9e-09
tr|A5AM00|A5AM00_VITVI Putative uncharacterized protein (Chromos...    62   3e-08
tr|Q8L9T8|Q8L9T8_ARATH Putative uncharacterized protein (At5g241...    60   8e-08
tr|B6T2G3|B6T2G3_MAIZE AGP16 OS=Zea mays PE=4 SV=1                     59   2e-07
tr|B4FD31|B4FD31_MAIZE Putative uncharacterized protein OS=Zea m...    59   2e-07
tr|A9PA79|A9PA79_POPTR Putative uncharacterized protein OS=Popul...    59   2e-07
tr|A5B2M5|A5B2M5_VITVI Putative uncharacterized protein OS=Vitis...    54   5e-06
tr|A9NR89|A9NR89_PICSI Putative uncharacterized protein OS=Picea...    54   7e-06
tr|B6T179|B6T179_MAIZE AGP16 OS=Zea mays PE=4 SV=1                     50   8e-05
tr|Q6H8D2|Q6H8D2_ORYSJ Putative uncharacterized protein OJ1006_A...    46   0.001
tr|A2X2A7|A2X2A7_ORYSI Putative uncharacterized protein OS=Oryza...    45   0.003
tr|Q5ZD40|Q5ZD40_ORYSJ Putative uncharacterized protein P0710A02...    39   0.14 
tr|A2WS21|A2WS21_ORYSI Putative uncharacterized protein OS=Oryza...    39   0.14 
tr|A3B0K5|A3B0K5_ORYSJ Putative uncharacterized protein OS=Oryza...    37   0.68 
tr|A2Y115|A2Y115_ORYSI Putative uncharacterized protein OS=Oryza...    37   0.68 

>tr|A9NL94|A9NL94_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=4 SV=1
          Length = 73

 Score = 75.5 bits (184), Expect = 2e-12
 Identities = 32/45 (71%), Positives = 40/45 (88%)
 Frame = -1

Query: 453 SMAPAPSPTSDGTTIDLGIAYALMFVALLVTYLVHPVDGFPFNLF 319
           + APAP+PTSDGT+ID GIAY LMF+AL +TYL+HP+D FP+NLF
Sbjct: 29  AQAPAPAPTSDGTSIDQGIAYVLMFLALALTYLIHPLDAFPYNLF 73


>tr|B6TQ77|B6TQ77_MAIZE AGP16 OS=Zea mays PE=4 SV=1
          Length = 76

 Score = 67.0 bits (162), Expect = 6e-10
 Identities = 31/46 (67%), Positives = 39/46 (84%), Gaps = 1/46 (2%)
 Frame = -1

Query: 453 SMAPAPSPTSDGTTIDLGIAYALMFVALLVTYLVHPVD-GFPFNLF 319
           + APAP+PTSDGT+IDLGIAY LM VAL++TYL+HP+D   P+ LF
Sbjct: 31  AQAPAPAPTSDGTSIDLGIAYILMLVALVLTYLIHPLDASSPYKLF 76


>tr|B6SR56|B6SR56_MAIZE AGP16 OS=Zea mays PE=4 SV=1
          Length = 73

 Score = 67.0 bits (162), Expect = 6e-10
 Identities = 31/46 (67%), Positives = 39/46 (84%), Gaps = 1/46 (2%)
 Frame = -1

Query: 453 SMAPAPSPTSDGTTIDLGIAYALMFVALLVTYLVHPVD-GFPFNLF 319
           + APAP+PTSDGT+IDLGIAY LM VAL++TYL+HP+D   P+ LF
Sbjct: 28  AQAPAPAPTSDGTSIDLGIAYILMLVALVLTYLIHPLDASSPYKLF 73


>tr|B6SMF8|B6SMF8_MAIZE AGP16 OS=Zea mays PE=4 SV=1
          Length = 75

 Score = 67.0 bits (162), Expect = 6e-10
 Identities = 31/46 (67%), Positives = 39/46 (84%), Gaps = 1/46 (2%)
 Frame = -1

Query: 453 SMAPAPSPTSDGTTIDLGIAYALMFVALLVTYLVHPVD-GFPFNLF 319
           + APAP+PTSDGT+IDLGIAY LM VAL++TYL+HP+D   P+ LF
Sbjct: 30  AQAPAPAPTSDGTSIDLGIAYILMLVALVLTYLIHPLDASSPYKLF 75


>tr|A5BTA7|A5BTA7_VITVI Putative uncharacterized protein (Chromosome
           chr15 scaffold_40, whole genome shotgun sequence)
           OS=Vitis vinifera GN=GSVIVT00026982001 PE=4 SV=1
          Length = 75

 Score = 65.9 bits (159), Expect = 1e-09
 Identities = 29/45 (64%), Positives = 36/45 (80%)
 Frame = -1

Query: 453 SMAPAPSPTSDGTTIDLGIAYALMFVALLVTYLVHPVDGFPFNLF 319
           S APAP+PTSDGT ID GIAY LM VAL++TYL+HP+D   ++ F
Sbjct: 31  SSAPAPAPTSDGTAIDQGIAYVLMLVALVLTYLIHPLDASSYSFF 75


>tr|Q6ETY5|Q6ETY5_ORYSJ Os02g0264800 protein OS=Oryza sativa subsp.
           japonica GN=P0006C08.11 PE=4 SV=1
          Length = 73

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 30/46 (65%), Positives = 38/46 (82%), Gaps = 1/46 (2%)
 Frame = -1

Query: 453 SMAPAPSPTSDGTTIDLGIAYALMFVALLVTYLVHPVD-GFPFNLF 319
           + APAP+P SDGT+IDLGIAY LM VAL++TYL+HP+D   P+ LF
Sbjct: 28  AQAPAPAPVSDGTSIDLGIAYILMLVALVLTYLIHPLDASSPYKLF 73


>tr|A9PBL3|A9PBL3_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=4 SV=1
          Length = 76

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 29/45 (64%), Positives = 36/45 (80%)
 Frame = -1

Query: 453 SMAPAPSPTSDGTTIDLGIAYALMFVALLVTYLVHPVDGFPFNLF 319
           S APAP+PTSDGT+ID GIAY LM VAL++TYL+HP+D   +  F
Sbjct: 32  SPAPAPAPTSDGTSIDQGIAYLLMLVALVLTYLIHPLDASSYTFF 76


>tr|A2X375|A2X375_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_06656 PE=4 SV=1
          Length = 73

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 30/46 (65%), Positives = 38/46 (82%), Gaps = 1/46 (2%)
 Frame = -1

Query: 453 SMAPAPSPTSDGTTIDLGIAYALMFVALLVTYLVHPVD-GFPFNLF 319
           + APAP+P SDGT+IDLGIAY LM VAL++TYL+HP+D   P+ LF
Sbjct: 28  AQAPAPAPVSDGTSIDLGIAYILMLVALVLTYLIHPLDASSPYKLF 73


>tr|B8B358|B8B358_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_23127 PE=4 SV=1
          Length = 77

 Score = 64.3 bits (155), Expect = 4e-09
 Identities = 29/47 (61%), Positives = 38/47 (80%), Gaps = 1/47 (2%)
 Frame = -1

Query: 456 PSMAPAPSPTSDGTTIDLGIAYALMFVALLVTYLVHPVD-GFPFNLF 319
           P+  PAP+P+SDGT+ID GIAY LM VAL++TYL+HP+D   P+ LF
Sbjct: 31  PAQPPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDASSPYKLF 77


>tr|Q94DB9|Q94DB9_ORYSJ cDNA clone:002-150-C11, full insert sequence
           OS=Oryza sativa subsp. japonica GN=P0694A04.20 PE=4 SV=1
          Length = 69

 Score = 63.9 bits (154), Expect = 5e-09
 Identities = 27/38 (71%), Positives = 34/38 (89%)
 Frame = -1

Query: 453 SMAPAPSPTSDGTTIDLGIAYALMFVALLVTYLVHPVD 340
           + APAP+PTSDGT++D GIAY LMFVAL +TYL+HP+D
Sbjct: 24  AQAPAPAPTSDGTSVDQGIAYVLMFVALALTYLIHPLD 61