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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913853
Clone id YMU001_000037_B03
Library
Length 365
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000037_B03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ATCAAATTTCAGTAAATTGGATAATGCCAAGACATGTCAGATAGTGATATCCAAGAATTC
AAAATTGATGAATATCAACTGCAGTTTTCTGACTACAGGTACAAAAATGGGAATCACACC
TAGGTATCTCTGTGGCGGTGATCTCTGATAAGGGAATTGCAGTCCACCATGGAGAATATT
TTCCACACGTATGAAAATCACTTCTTTTTCTCGGTACCACCAGTAGATCTCTGCTTCCGG
AGAGCAGAGACATTTCCTCACGCTTTTCTTCGCCTTAGGTGAGTCCAAGCCTCCTCTTTG
CCACCTTAAGAGCTCTCTTGTCCTTTCCCACCTTAAAAGCTCAGTAATACGCTCTCGTAA
GGTGC
■■Homology search results ■■ -
sp_hit_id Q9LZ57
Definition sp|Q9LZ57|RL363_ARATH 60S ribosomal protein L36-3 OS=Arabidopsis thaliana
Align length 30
Score (bit) 39.7
E-value 0.005
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913853|Adiantum capillus-veneris mRNA, clone:
YMU001_000037_B03.
         (365 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9LZ57|RL363_ARATH 60S ribosomal protein L36-3 OS=Arabidopsis...    40   0.005
sp|Q9M352|RL362_ARATH 60S ribosomal protein L36-2 OS=Arabidopsis...    40   0.005
sp|O80929|RL361_ARATH 60S ribosomal protein L36-1 OS=Arabidopsis...    40   0.005
sp|Q9LRB8|RL36_ENTCP 60S ribosomal protein L36 OS=Enteromorpha c...    39   0.011
sp|Q4PM12|RL36_IXOSC 60S ribosomal protein L36 OS=Ixodes scapula...    34   0.20 
sp|P49630|RL36_DROME 60S ribosomal protein L36 OS=Drosophila mel...    33   0.34 
sp|Q55AQ9|RL36_DICDI 60S ribosomal protein L36 OS=Dictyostelium ...    33   0.34 
sp|P52866|RL36_DAUCA 60S ribosomal protein L36 OS=Daucus carota ...    30   0.37 
sp|Q6DER2|RL36_XENTR 60S ribosomal protein L36 OS=Xenopus tropic...    32   1.3  
sp|Q66KU4|RL36_XENLA 60S ribosomal protein L36 OS=Xenopus laevis...    32   1.3  
sp|P39032|RL36_RAT 60S ribosomal protein L36 OS=Rattus norvegicu...    31   1.7  
sp|Q5RAZ9|RL36_PONAB 60S ribosomal protein L36 OS=Pongo abelii G...    31   1.7  
sp|Q8UW19|RL36_LAPHA 60S ribosomal protein L36 OS=Lapemis hardwi...    31   1.7  
sp|Q90YT2|RL36_ICTPU 60S ribosomal protein L36 OS=Ictalurus punc...    31   1.7  
sp|Q9Y3U8|RL36_HUMAN 60S ribosomal protein L36 OS=Homo sapiens G...    31   1.7  
sp|Q6Q415|RL36_DANRE 60S ribosomal protein L36 OS=Danio rerio GN...    31   1.7  
sp|Q98TF6|RL36_CHICK 60S ribosomal protein L36 OS=Gallus gallus ...    31   1.7  
sp|Q3T171|RL36_BOVIN 60S ribosomal protein L36 OS=Bos taurus GN=...    31   1.7  
sp|P0C6E6|RL36X_HUMAN Putative 60S ribosomal protein L36-like 1 ...    29   6.4  
sp|P47964|RL36_MOUSE 60S ribosomal protein L36 OS=Mus musculus G...    29   8.4  
sp|P49181|RL36_CAEEL 60S ribosomal protein L36 OS=Caenorhabditis...    29   8.4  
sp|P48918|NU5M_ALBCO NADH-ubiquinone oxidoreductase chain 5 OS=A...    29   8.4  
sp|Q8V7G3|CAPSD_TTVV7 Capsid protein OS=Torque teno virus (isola...    29   8.4  

>sp|Q9LZ57|RL363_ARATH 60S ribosomal protein L36-3 OS=Arabidopsis
           thaliana GN=RPL36C PE=2 SV=1
          Length = 108

 Score = 39.7 bits (91), Expect = 0.005
 Identities = 22/30 (73%), Positives = 24/30 (80%), Gaps = 1/30 (3%)
 Frame = -2

Query: 334 KVGKDKRALKVAKRRLGL-T*GEEKREEMS 248
           KVGKDKRALKVAKR+LG     + KREEMS
Sbjct: 61  KVGKDKRALKVAKRKLGTHKRAKRKREEMS 90


>sp|Q9M352|RL362_ARATH 60S ribosomal protein L36-2 OS=Arabidopsis
           thaliana GN=RPL36B PE=2 SV=1
          Length = 112

 Score = 39.7 bits (91), Expect = 0.005
 Identities = 22/30 (73%), Positives = 24/30 (80%), Gaps = 1/30 (3%)
 Frame = -2

Query: 334 KVGKDKRALKVAKRRLGL-T*GEEKREEMS 248
           KVGKDKRALKVAKR+LG     + KREEMS
Sbjct: 65  KVGKDKRALKVAKRKLGTHKRAKRKREEMS 94


>sp|O80929|RL361_ARATH 60S ribosomal protein L36-1 OS=Arabidopsis
           thaliana GN=RPL36A PE=2 SV=1
          Length = 113

 Score = 39.7 bits (91), Expect = 0.005
 Identities = 22/30 (73%), Positives = 24/30 (80%), Gaps = 1/30 (3%)
 Frame = -2

Query: 334 KVGKDKRALKVAKRRLGL-T*GEEKREEMS 248
           KVGKDKRALKVAKR+LG     + KREEMS
Sbjct: 65  KVGKDKRALKVAKRKLGTHKRAKRKREEMS 94


>sp|Q9LRB8|RL36_ENTCP 60S ribosomal protein L36 OS=Enteromorpha
           compressa GN=RL36 PE=3 SV=1
          Length = 101

 Score = 38.5 bits (88), Expect = 0.011
 Identities = 20/30 (66%), Positives = 25/30 (83%), Gaps = 1/30 (3%)
 Frame = -2

Query: 334 KVGKDKRALKVAKRRLGL-T*GEEKREEMS 248
           KVGKDKRALK+ KR+LG    G++KREEM+
Sbjct: 59  KVGKDKRALKMCKRKLGTHMRGKKKREEMA 88


>sp|Q4PM12|RL36_IXOSC 60S ribosomal protein L36 OS=Ixodes scapularis
           GN=RpL36 PE=3 SV=1
          Length = 110

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 22/44 (50%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
 Frame = -2

Query: 334 KVGKDKRALKVAKRRLGL-T*GEEKREEMSLLSGSRDLLVVPRK 206
           KV KDKRALK  K+RLG    G+ KR+E+S      ++LV  RK
Sbjct: 62  KVSKDKRALKFIKKRLGTHLRGKRKRDELS------NVLVAQRK 99


>sp|P49630|RL36_DROME 60S ribosomal protein L36 OS=Drosophila
           melanogaster GN=RpL36 PE=2 SV=1
          Length = 115

 Score = 33.5 bits (75), Expect = 0.34
 Identities = 19/30 (63%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = -2

Query: 334 KVGKDKRALKVAKRRLGL-T*GEEKREEMS 248
           KV KDKRALK  KRRLG     + KREE+S
Sbjct: 72  KVSKDKRALKFLKRRLGTHIRAKRKREELS 101


>sp|Q55AQ9|RL36_DICDI 60S ribosomal protein L36 OS=Dictyostelium
           discoideum GN=rpl36 PE=3 SV=1
          Length = 105

 Score = 33.5 bits (75), Expect = 0.34
 Identities = 17/30 (56%), Positives = 25/30 (83%), Gaps = 1/30 (3%)
 Frame = -2

Query: 334 KVGKDKRALKVAKRRLG-LT*GEEKREEMS 248
           K G DKRALKVAK+RLG +  G++KR++++
Sbjct: 67  KSGLDKRALKVAKKRLGSIQAGKKKRDDIA 96


>sp|P52866|RL36_DAUCA 60S ribosomal protein L36 OS=Daucus carota
           GN=RPL36 PE=3 SV=2
          Length = 106

 Score = 30.0 bits (66), Expect(2) = 0.37
 Identities = 15/27 (55%), Positives = 21/27 (77%)
 Frame = -2

Query: 334 KVGKDKRALKVAKRRLGLT*GEEKREE 254
           KVGKDKRALKV + ++G +  +E +EE
Sbjct: 65  KVGKDKRALKVRQEKVGHS--QESKEE 89



 Score = 23.5 bits (49), Expect(2) = 0.37
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -3

Query: 246 CSPEAEIYWWY 214
           CSP  E +WWY
Sbjct: 96  CSPPDEGWWWY 106


>sp|Q6DER2|RL36_XENTR 60S ribosomal protein L36 OS=Xenopus
           tropicalis GN=rpl36 PE=3 SV=1
          Length = 105

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 17/30 (56%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = -2

Query: 334 KVGKDKRALKVAKRRLGL-T*GEEKREEMS 248
           KV KDKRALK  K+R+G     + KREE+S
Sbjct: 62  KVSKDKRALKFIKKRIGTHIRAKRKREELS 91


>sp|Q66KU4|RL36_XENLA 60S ribosomal protein L36 OS=Xenopus laevis
           GN=rpl36 PE=3 SV=1
          Length = 105

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 17/30 (56%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = -2

Query: 334 KVGKDKRALKVAKRRLGL-T*GEEKREEMS 248
           KV KDKRALK  K+R+G     + KREE+S
Sbjct: 62  KVSKDKRALKFIKKRIGTHIRAKRKREELS 91
tr_hit_id Q5I7L5
Definition tr|Q5I7L5|Q5I7L5_WHEAT 60S ribosomal protein L36 OS=Triticum aestivum
Align length 30
Score (bit) 40.0
E-value 0.058
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913853|Adiantum capillus-veneris mRNA, clone:
YMU001_000037_B03.
         (365 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q5I7L5|Q5I7L5_WHEAT 60S ribosomal protein L36 OS=Triticum aes...    40   0.058
tr|B5M1W9|B5M1W9_RHEAU Ribosomal protein L36 OS=Rheum australe P...    40   0.058
tr|A9PCN6|A9PCN6_POPTR 60S ribosomal protein L36 OS=Populus tric...    40   0.058
tr|A9P9I5|A9P9I5_POPTR 60S ribosomal protein L36 OS=Populus tric...    40   0.058
tr|A5ATP3|A5ATP3_VITVI 60S ribosomal protein L36 OS=Vitis vinife...    40   0.058
tr|A9PD00|A9PD00_POPTR 60S ribosomal protein L36 OS=Populus tric...    40   0.076
tr|A8JHU2|A8JHU2_CHLRE 60S ribosomal protein L36 OS=Chlamydomona...    40   0.076
tr|Q8L5X0|Q8L5X0_ORYSJ 60S ribosomal protein L36 OS=Oryza sativa...    39   0.13 
tr|Q6L510|Q6L510_ORYSJ 60S ribosomal protein L36 OS=Oryza sativa...    39   0.13 
tr|Q5Q0X7|Q5Q0X7_SACOF 60S ribosomal protein L36 OS=Saccharum of...    39   0.13 
tr|A9NL37|A9NL37_PICSI 60S ribosomal protein L36 OS=Picea sitche...    39   0.13 
tr|A9NKW3|A9NKW3_PICSI 60S ribosomal protein L36 OS=Picea sitche...    39   0.13 
tr|A6MZE1|A6MZE1_ORYSI 60S ribosomal protein L36 (Fragment) OS=O...    39   0.13 
tr|A2ZZF6|A2ZZF6_ORYSJ 60S ribosomal protein L36 OS=Oryza sativa...    39   0.13 
tr|A2Y5F8|A2Y5F8_ORYSI 60S ribosomal protein L36 OS=Oryza sativa...    39   0.13 
tr|A9SJ72|A9SJ72_PHYPA 60S ribosomal protein L36 OS=Physcomitrel...    39   0.17 
tr|A9RXF5|A9RXF5_PHYPA 60S ribosomal protein L36 OS=Physcomitrel...    39   0.17 
tr|A2WWV9|A2WWV9_ORYSI 60S ribosomal protein L36 OS=Oryza sativa...    39   0.17 
tr|B6TRR4|B6TRR4_MAIZE 60S ribosomal protein L36-2 OS=Zea mays P...    38   0.29 
tr|B6TAT4|B6TAT4_MAIZE 60S ribosomal protein L36-2 OS=Zea mays P...    38   0.29 
tr|B4FW07|B4FW07_MAIZE 60S ribosomal protein L36-2 OS=Zea mays P...    38   0.29 
tr|B6SGX0|B6SGX0_MAIZE 60S ribosomal protein L36-2 OS=Zea mays P...    37   0.38 
tr|Q01EZ8|Q01EZ8_OSTTA 60S ribosomal protein L36 OS=Ostreococcus...    36   1.1  
tr|Q8T644|Q8T644_APLCA 60S ribosomal protein L36 (Fragment) OS=A...    36   1.1  
tr|A8E698|A8E698_9BILA 60S ribosomal protein L36 OS=Spadella cep...    35   1.4  
tr|A7SNU0|A7SNU0_NEMVE 60S ribosomal protein L36 OS=Nematostella...    35   1.9  
tr|Q4KTE8|Q4KTE8_SUBDO 60S ribosomal protein L36 OS=Suberites do...    35   2.4  
tr|B2YI51|B2YI51_9BILA Putative 60S ribosomal protein RPL36 OS=P...    35   2.4  
tr|A8E697|A8E697_9BILA 60S ribosomal protein L36 OS=Spadella cep...    35   2.4  
tr|Q7XY66|Q7XY66_GRIJA 60S ribosomal protein L36 OS=Griffithsia ...    34   4.2  

>tr|Q5I7L5|Q5I7L5_WHEAT 60S ribosomal protein L36 OS=Triticum
           aestivum PE=3 SV=1
          Length = 112

 Score = 40.0 bits (92), Expect = 0.058
 Identities = 22/30 (73%), Positives = 25/30 (83%), Gaps = 1/30 (3%)
 Frame = -2

Query: 334 KVGKDKRALKVAKRRLGL-T*GEEKREEMS 248
           KVGKDKRALKVAKR+LG     ++KREEMS
Sbjct: 65  KVGKDKRALKVAKRKLGTHKRAKKKREEMS 94


>tr|B5M1W9|B5M1W9_RHEAU Ribosomal protein L36 OS=Rheum australe PE=4
           SV=1
          Length = 110

 Score = 40.0 bits (92), Expect = 0.058
 Identities = 22/30 (73%), Positives = 25/30 (83%), Gaps = 1/30 (3%)
 Frame = -2

Query: 334 KVGKDKRALKVAKRRLGL-T*GEEKREEMS 248
           KVGKDKRALKVAKR+LG     ++KREEMS
Sbjct: 65  KVGKDKRALKVAKRKLGTHKRAKKKREEMS 94


>tr|A9PCN6|A9PCN6_POPTR 60S ribosomal protein L36 OS=Populus
           trichocarpa PE=3 SV=1
          Length = 110

 Score = 40.0 bits (92), Expect = 0.058
 Identities = 22/30 (73%), Positives = 25/30 (83%), Gaps = 1/30 (3%)
 Frame = -2

Query: 334 KVGKDKRALKVAKRRLGL-T*GEEKREEMS 248
           KVGKDKRALKVAKR+LG     ++KREEMS
Sbjct: 65  KVGKDKRALKVAKRKLGTHKRAKKKREEMS 94


>tr|A9P9I5|A9P9I5_POPTR 60S ribosomal protein L36 OS=Populus
           trichocarpa PE=3 SV=1
          Length = 110

 Score = 40.0 bits (92), Expect = 0.058
 Identities = 22/30 (73%), Positives = 25/30 (83%), Gaps = 1/30 (3%)
 Frame = -2

Query: 334 KVGKDKRALKVAKRRLGL-T*GEEKREEMS 248
           KVGKDKRALKVAKR+LG     ++KREEMS
Sbjct: 65  KVGKDKRALKVAKRKLGTHKRAKKKREEMS 94


>tr|A5ATP3|A5ATP3_VITVI 60S ribosomal protein L36 OS=Vitis vinifera
           GN=GSVIVT00026857001 PE=3 SV=1
          Length = 110

 Score = 40.0 bits (92), Expect = 0.058
 Identities = 22/30 (73%), Positives = 25/30 (83%), Gaps = 1/30 (3%)
 Frame = -2

Query: 334 KVGKDKRALKVAKRRLGL-T*GEEKREEMS 248
           KVGKDKRALKVAKR+LG     ++KREEMS
Sbjct: 65  KVGKDKRALKVAKRKLGTHKRAKKKREEMS 94


>tr|A9PD00|A9PD00_POPTR 60S ribosomal protein L36 OS=Populus
           trichocarpa PE=3 SV=1
          Length = 110

 Score = 39.7 bits (91), Expect = 0.076
 Identities = 22/30 (73%), Positives = 24/30 (80%), Gaps = 1/30 (3%)
 Frame = -2

Query: 334 KVGKDKRALKVAKRRLGL-T*GEEKREEMS 248
           KVGKDKRALKVAKR+LG     + KREEMS
Sbjct: 65  KVGKDKRALKVAKRKLGTHKRAKRKREEMS 94


>tr|A8JHU2|A8JHU2_CHLRE 60S ribosomal protein L36 OS=Chlamydomonas
           reinhardtii GN=RPL36 PE=3 SV=1
          Length = 98

 Score = 39.7 bits (91), Expect = 0.076
 Identities = 21/30 (70%), Positives = 25/30 (83%), Gaps = 1/30 (3%)
 Frame = -2

Query: 334 KVGKDKRALKVAKRRLGL-T*GEEKREEMS 248
           KVGKDKRALKVAKR+LG    G+ KREE++
Sbjct: 61  KVGKDKRALKVAKRKLGTHIRGKRKREELA 90


>tr|Q8L5X0|Q8L5X0_ORYSJ 60S ribosomal protein L36 OS=Oryza sativa
           subsp. japonica GN=P0408C03.28 PE=3 SV=1
          Length = 110

 Score = 38.9 bits (89), Expect = 0.13
 Identities = 21/30 (70%), Positives = 25/30 (83%), Gaps = 1/30 (3%)
 Frame = -2

Query: 334 KVGKDKRALKVAKRRLGL-T*GEEKREEMS 248
           KVGKDKRALKVAKR+LG     ++KREEM+
Sbjct: 65  KVGKDKRALKVAKRKLGTHKRAKKKREEMA 94


>tr|Q6L510|Q6L510_ORYSJ 60S ribosomal protein L36 OS=Oryza sativa
           subsp. japonica GN=OJ1281_H05.4 PE=3 SV=1
          Length = 113

 Score = 38.9 bits (89), Expect = 0.13
 Identities = 21/30 (70%), Positives = 25/30 (83%), Gaps = 1/30 (3%)
 Frame = -2

Query: 334 KVGKDKRALKVAKRRLGL-T*GEEKREEMS 248
           KVGKDKRALKVAKR+LG     ++KREEM+
Sbjct: 65  KVGKDKRALKVAKRKLGTHKRAKKKREEMA 94


>tr|Q5Q0X7|Q5Q0X7_SACOF 60S ribosomal protein L36 OS=Saccharum
           officinarum PE=3 SV=1
          Length = 111

 Score = 38.9 bits (89), Expect = 0.13
 Identities = 21/30 (70%), Positives = 25/30 (83%), Gaps = 1/30 (3%)
 Frame = -2

Query: 334 KVGKDKRALKVAKRRLGL-T*GEEKREEMS 248
           KVGKDKRALKVAKR+LG     ++KREEM+
Sbjct: 65  KVGKDKRALKVAKRKLGTHKRAKKKREEMA 94