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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913858
Clone id YMU001_000037_B08
Library
Length 602
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000037_B08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TGTGTACGTGTTCTTATTGTTGCTTTACGACTTCCACAAAGAGAGGTTGCTGAGATTACC
CAACCTTCAGAGCGCACTCCATCCATGTTGCCTTGGGAGACGGCCTTTCTTGTAGTGCCT
TCATTGCGCCTCATAACAGATCCCGTACCCGCCATGTTGGCAATACCTTTCGCTCTTGTG
AAGGGGCCAACAGACAGAAAGATGATCTCACATACAATCCACAAGTCATCTGCATGCCCC
GTCCTCGCAAGTTTGAACACCATGTGCTTGACGACTAAATTATGTTCTTCATTTTCCTCT
CCATATAGAGATAAACCAACCGCCAGTCTTCGTACTTGTCAATGAATGCTTCCCGCAGCT
CGAAAAGTTTTGTATCAGCATACTTCCTCAAAGCTCTTTTATACTCACCACTTTGAAAGA
AACATTCCCAACTCTTCCTTTTTCTTGCCCCCTTGCACCTTGACTTCCTCAAATCTTGAC
CCCAAAGCTTCAACCACCTGTCGTGGTAGTTGACCTGTCTTGATGCCCTCCGTCACAAAT
GATATACTGTCTGCTAATTTCCTATCCACTAACCACTGCCGGTATGATTCAGATAGCTGA
AT
■■Homology search results ■■ -
sp_hit_id Q9H6T0
Definition sp|Q9H6T0|RB35B_HUMAN RNA-binding protein 35B OS=Homo sapiens
Align length 78
Score (bit) 31.6
E-value 3.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913858|Adiantum capillus-veneris mRNA, clone:
YMU001_000037_B08.
         (602 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9H6T0|RB35B_HUMAN RNA-binding protein 35B OS=Homo sapiens GN...    32   3.2  
sp|Q8BV79|LBA1_MOUSE Lupus brain antigen 1 OS=Mus musculus GN=Lb...    32   3.2  
sp|A6LHB5|RRF_PARD8 Ribosome-recycling factor OS=Parabacteroides...    31   4.2  
sp|O15050|LBA1_HUMAN Lupus brain antigen 1 homolog OS=Homo sapie...    31   4.2  
sp|Q891N2|RECX_CLOTE Regulatory protein recX OS=Clostridium teta...    31   5.5  
sp|Q8K0G8|RB35B_MOUSE RNA-binding protein 35B OS=Mus musculus GN...    31   5.5  
sp|Q9H6K5|YS027_HUMAN Putative uncharacterized protein FLJ22184 ...    26   6.0  
sp|Q2TA14|PCP_BOVIN Lysosomal Pro-X carboxypeptidase OS=Bos taur...    30   7.2  
sp|A4J0M0|THIG_DESRM Thiazole biosynthesis protein thiG OS=Desul...    30   9.4  
sp|Q03386|GNDS_RAT Ral guanine nucleotide dissociation stimulato...    30   9.4  
sp|P0C2V4|FLGN_YEREN Flagella synthesis protein flgN OS=Yersinia...    30   9.4  
sp|P28324|ELK4_HUMAN ETS domain-containing protein Elk-4 OS=Homo...    30   9.4  

>sp|Q9H6T0|RB35B_HUMAN RNA-binding protein 35B OS=Homo sapiens
           GN=RBM35B PE=2 SV=1
          Length = 727

 Score = 31.6 bits (70), Expect = 3.2
 Identities = 24/78 (30%), Positives = 37/78 (47%)
 Frame = +1

Query: 70  ERTPSMLPWETAFLVVPSLRLITDPVPAMLAIPFALVKGPTDRKMISHTIHKSSACPVLA 249
           + TP+++P ETA L   S  L    VPA    P A   GP  +  +++T +  S  P ++
Sbjct: 591 QATPTLIPTETAALYPSSALLPAARVPA-APTPVAYYPGPATQLYLNYTAYYPS--PPVS 647

Query: 250 SLNTMCLTTKLCSSFSSP 303
                 LTT   +  S+P
Sbjct: 648 PTTVGYLTTPTAALASAP 665


>sp|Q8BV79|LBA1_MOUSE Lupus brain antigen 1 OS=Mus musculus GN=Lba1
            PE=2 SV=3
          Length = 2999

 Score = 31.6 bits (70), Expect = 3.2
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -2

Query: 433  SWECFFQSGEYKRALRKYADTKLFELREAFIDKYED 326
            ++ CF Q  E+  ALR Y   +LFE     ++KYE+
Sbjct: 1885 AFRCFEQIQEFDLALRMYCQEELFEEAAIAVEKYEE 1920


>sp|A6LHB5|RRF_PARD8 Ribosome-recycling factor OS=Parabacteroides
           distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152)
           GN=frr PE=3 SV=1
          Length = 187

 Score = 31.2 bits (69), Expect = 4.2
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 1   CVRVLIVALRLPQREVAEITQPSERTPSMLPWE 99
           CV+V+     +P   VA +T P  RT  + PWE
Sbjct: 41  CVKVMYYGAPVPLTNVATVTVPDARTIMITPWE 73


>sp|O15050|LBA1_HUMAN Lupus brain antigen 1 homolog OS=Homo sapiens
            GN=LBA1 PE=2 SV=4
          Length = 2925

 Score = 31.2 bits (69), Expect = 4.2
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = -2

Query: 469  RKSRCKGARKRKSWECFFQSGEYKRALRKYADTKLFELREAFIDKYED 326
            ++S+C     + ++ CF Q  E+  AL+ Y   +LFE     ++KYE+
Sbjct: 1804 KRSQCY----KDAFRCFEQIQEFDLALKMYCQEELFEEAAIAVEKYEE 1847


>sp|Q891N2|RECX_CLOTE Regulatory protein recX OS=Clostridium tetani
           GN=recX PE=3 SV=1
          Length = 216

 Score = 30.8 bits (68), Expect = 5.5
 Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
 Frame = -2

Query: 529 RASRQVNYHDRWLKLWGQDLRKSRCKGARKR---KSWECFFQSGEYKRALRKYADTKLFE 359
           +  ++V+Y +  LK+  ++    +CKG   +   KS++   Q   Y + L K  D K  E
Sbjct: 46  KIGQEVDYKE--LKVIAEEDNYIKCKGDALKFIEKSYKTERQV--YDKLLSKGYDNKTIE 101

Query: 358 LREAFIDKY---EDWRLVYLYMERKMK 287
               F+ +Y   +DWR   LY+E ++K
Sbjct: 102 RVIDFLTEYKFIDDWRFGELYIEERLK 128


>sp|Q8K0G8|RB35B_MOUSE RNA-binding protein 35B OS=Mus musculus
           GN=Rbm35b PE=2 SV=1
          Length = 717

 Score = 30.8 bits (68), Expect = 5.5
 Identities = 24/78 (30%), Positives = 37/78 (47%)
 Frame = +1

Query: 70  ERTPSMLPWETAFLVVPSLRLITDPVPAMLAIPFALVKGPTDRKMISHTIHKSSACPVLA 249
           + TP+++P ET  L   S  L    VPA  A P A   GP  +  +++T +  S  P ++
Sbjct: 581 QATPALIPTETTALYPSSALLPAARVPA-AATPLAYYPGPATQLYMNYTAYYPS--PPVS 637

Query: 250 SLNTMCLTTKLCSSFSSP 303
                 LTT   +  S+P
Sbjct: 638 PTTVGYLTTPPTALASTP 655


>sp|Q9H6K5|YS027_HUMAN Putative uncharacterized protein FLJ22184
           OS=Homo sapiens PE=2 SV=1
          Length = 616

 Score = 26.2 bits (56), Expect(2) = 6.0
 Identities = 26/93 (27%), Positives = 33/93 (35%), Gaps = 4/93 (4%)
 Frame = +1

Query: 58  TQPSERTPSMLP----WETAFLVVPSLRLITDPVPAMLAIPFALVKGPTDRKMISHTIHK 225
           T P E  PS+ P      +A L  P L     P P  L  P + +  P      S     
Sbjct: 24  TPPLENLPSLAPPPLQTASAPLTTPHLETPPCPAPCPLQAPPSPLTTPPPETPSSIATPP 83

Query: 226 SSACPVLASLNTMCLTTKLCSSFSSPYRDKPTA 324
             A P LAS     L +   S  ++P    P A
Sbjct: 84  PQAPPALASPPLQGLPSPPLSPLATPPPQAPPA 116



 Score = 22.7 bits (47), Expect(2) = 6.0
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +2

Query: 437 PFSCPLAP*LPQILTPKLQPPVVVVDLS*CPPSQ 538
           PFS P +P +    +P   PP   V  S  PPSQ
Sbjct: 156 PFSPPPSPPVQAPFSPPASPP---VSPSATPPSQ 186


>sp|Q2TA14|PCP_BOVIN Lysosomal Pro-X carboxypeptidase OS=Bos taurus
           GN=PRCP PE=2 SV=1
          Length = 499

 Score = 30.4 bits (67), Expect = 7.2
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +1

Query: 10  VLIVALRLPQREVAEITQPSERTPSMLPWETAFLVVPSLRL 132
           +L++A   P    A    PS R PS LPW T+F   P++ L
Sbjct: 10  LLLIAFLTPG--AANPVSPSLRAPSSLPWSTSFRSRPTITL 48


>sp|A4J0M0|THIG_DESRM Thiazole biosynthesis protein thiG
           OS=Desulfotomaculum reducens (strain MI-1) GN=thiG PE=3
           SV=1
          Length = 257

 Score = 30.0 bits (66), Expect = 9.4
 Identities = 22/63 (34%), Positives = 29/63 (46%)
 Frame = +1

Query: 4   VRVLIVALRLPQREVAEITQPSERTPSMLPWETAFLVVPSLRLITDPVPAMLAIPFALVK 183
           VR+LI  + LP    A I +PSE   +M     A LV  ++    DPV    A   A+  
Sbjct: 169 VRILIEEISLPVIVDAGIGRPSEAAEAMEMGAAAVLVNTAVATAKDPVAMARAFGLAVEA 228

Query: 184 GPT 192
           G T
Sbjct: 229 GRT 231


>sp|Q03386|GNDS_RAT Ral guanine nucleotide dissociation stimulator
           OS=Rattus norvegicus GN=Ralgds PE=1 SV=1
          Length = 895

 Score = 30.0 bits (66), Expect = 9.4
 Identities = 24/90 (26%), Positives = 39/90 (43%)
 Frame = +1

Query: 52  EITQPSERTPSMLPWETAFLVVPSLRLITDPVPAMLAIPFALVKGPTDRKMISHTIHKSS 231
           E  +PSE  P  L       + P+ +L  +P PA+L  P         R + S  + + +
Sbjct: 237 EDLEPSEVEPEALSPAPVLSLKPASQL--EPAPALLLTP--------SRAVASTPVREPA 286

Query: 232 ACPVLASLNTMCLTTKLCSSFSSPYRDKPT 321
             PVLAS   +   ++L  +   P   +PT
Sbjct: 287 PVPVLASSPVVAPASELEPALEPPLDPEPT 316
tr_hit_id A6SIS8
Definition tr|A6SIS8|A6SIS8_BOTFB Predicted protein OS=Botryotinia fuckeliana (strain B05.10)
Align length 147
Score (bit) 36.2
E-value 1.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913858|Adiantum capillus-veneris mRNA, clone:
YMU001_000037_B08.
         (602 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A6SIS8|A6SIS8_BOTFB Predicted protein OS=Botryotinia fuckelia...    36   1.5  
tr|Q0FWW1|Q0FWW1_9RHOB Hydrophobe/amphiphile efflux-1 family pro...    35   3.4  
tr|Q7QF04|Q7QF04_ANOGA AGAP000241-PA (Fragment) OS=Anopheles gam...    35   3.4  
tr|B4WLZ4|B4WLZ4_9SYNE Iron-sulfur cluster binding protein, puta...    33   9.8  
tr|A8I9C7|A8I9C7_CHLRE Peptidyl-prolyl cis-trans isomerase, FKBP...    33   9.8  

>tr|A6SIS8|A6SIS8_BOTFB Predicted protein OS=Botryotinia fuckeliana
           (strain B05.10) GN=BC1G_12533 PE=4 SV=1
          Length = 268

 Score = 36.2 bits (82), Expect = 1.5
 Identities = 40/147 (27%), Positives = 58/147 (39%), Gaps = 7/147 (4%)
 Frame = +1

Query: 28  RLPQREVAEITQP---SERTPSMLPWETAFLVVPSLRLITDPVPAMLAIPFALVKGPTDR 198
           RLPQRE A+ T P   S  TP      T   V P +R I   +  +  I   L  GPT  
Sbjct: 19  RLPQREQAD-THPHSASRETP------TPSNVFPYIRFILYSITGVAFITSFLWAGPTAL 71

Query: 199 KMISHTIHKSSACPVLASLNTMCLTTKLCSSFSSPYRDKPTASLRTCQ*MLPAARKVLYQ 378
           +   +    S+A P + + +T  +   + S  S       T  L+     +         
Sbjct: 72  REYLNAPSSSAALPTITNSSTPTINLVIASFTSKSDSSGWTKGLKKDNLAIIQHTSPAST 131

Query: 379 HTSSK----LFYTHHFERNIPNSSFFL 447
           H  S+    L Y H +  N+P+ S FL
Sbjct: 132 HKGSEALIYLKYLHQYYDNLPSVSIFL 158


>tr|Q0FWW1|Q0FWW1_9RHOB Hydrophobe/amphiphile efflux-1 family
           protein OS=Roseovarius sp. HTCC2601 GN=R2601_02673 PE=4
           SV=1
          Length = 1053

 Score = 35.0 bits (79), Expect = 3.4
 Identities = 29/105 (27%), Positives = 47/105 (44%)
 Frame = +1

Query: 16  IVALRLPQREVAEITQPSERTPSMLPWETAFLVVPSLRLITDPVPAMLAIPFALVKGPTD 195
           IV +   +R +AE   P E T   +   TA ++  +L L+       + +P   + G T 
Sbjct: 412 IVVVENTERLIAEGLAPKEATRRAMREVTAPVIATTLVLLA------VFVPVTFMPGITG 465

Query: 196 RKMISHTIHKSSACPVLASLNTMCLTTKLCSSFSSPYRDKPTASL 330
           R      I  S A  +++SLN + L+  LCS    P + +P   L
Sbjct: 466 RLYSEFAITISGAV-LISSLNALTLSPALCSLILKPRKGEPRGLL 509


>tr|Q7QF04|Q7QF04_ANOGA AGAP000241-PA (Fragment) OS=Anopheles
           gambiae GN=AGAP000241 PE=4 SV=3
          Length = 358

 Score = 35.0 bits (79), Expect = 3.4
 Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
 Frame = -1

Query: 323 AVGLSLYGEENEEHNLVVKHMVFKLARTGHADDLWIVCEIIFLSVGPFTRAKGIANMAGT 144
           AVGL L G E EE N  ++  +     T    + ++V      S+   +R  G+  +AGT
Sbjct: 68  AVGLCLSGAEAEETNRELEAYLHTHYPT--VAERYVVASDTVGSIQAVSRLGGMVIIAGT 125

Query: 143 GS--VMRRNEGTTRKAVSQGNMDGVRSEGWVISATSL 39
           GS  ++R  +G+T      G+M G     W I+  ++
Sbjct: 126 GSNTLLRNPDGSTHGCGGWGHMIGDEGGAWWIARNAI 162


>tr|B4WLZ4|B4WLZ4_9SYNE Iron-sulfur cluster binding protein,
           putative OS=Synechococcus sp. PCC 7335 GN=S7335_3285
           PE=4 SV=1
          Length = 322

 Score = 33.5 bits (75), Expect = 9.8
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -2

Query: 484 WGQDLRKSRCKGARKRKSWECFFQSGEYKRALRKYADT 371
           WG+D  +   K  ++  +W C   SGE K   R YADT
Sbjct: 105 WGRDYHRVLTKKLKQLAAWLCSQSSGENKIVARPYADT 142


>tr|A8I9C7|A8I9C7_CHLRE Peptidyl-prolyl cis-trans isomerase,
           FKBP-type OS=Chlamydomonas reinhardtii GN=FKB42 PE=4
           SV=1
          Length = 1784

 Score = 33.5 bits (75), Expect = 9.8
 Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 8/59 (13%)
 Frame = -2

Query: 454 KGARKRKSWECFFQSGEYKRALRKYA-------DTKLFELREAFIDKYED-WRLVYLYM 302
           +  R+R +    F++G+YK AL KYA       +  +F+L   ++DK ED  +LV+L M
Sbjct: 206 RAERRRLTGNELFKAGQYKEALAKYAMALSYLDEDFMFQLAGHYLDKAEDVKKLVHLNM 264