NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913868
Clone id YMU001_000037_C06
Library
Length 506
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000037_C06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AAAGATAGCCGACAGGATGCTCTTGCTTCGTTGTGAATAGGAGTAGGGTGGTCTCCGGAG
GGTTGTGTCCAAATCTTAAGAATGATAGCATGCTCCAGCTCATAGCAAGCAGGTTTGTTT
CTTGTGCCCCCCCCCAAAAAAAAAAACACGCGGCGCTGCGTGCACACACACAGAGACACA
TTTATTTTGTAAATCTTTGGTATTAATTTACTAGTGGGAAACCTCGAGACGAGGAAAACC
CACACAAATGAACATATACAAAAGTATGAACACAGAAGTGTTCATGTGCCAAAACAGGGT
AAAAGCATTCATACACCCACTTCCAAGGCAAAACGTAAGGATTGCTCAAGGGAAAGCCTG
AAAAACTGAAACTGATCTGTATCAGCACGAGAGAACATACAGCTGTTGCATTGACGCCAC
AGAGTCCAATAGGCCCAAAATCTGACCCACATAAAGAAAACTGCAAATTGTTGTGAAGAA
GGTGGGAGAATGCCGAAAGCCCAAAA
■■Homology search results ■■ -
sp_hit_id Q9Y7J5
Definition sp|Q9Y7J5|YOI9_SCHPO TBC domain-containing protein C1778.09 OS=Schizosaccharomyces pombe
Align length 25
Score (bit) 31.2
E-value 2.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913868|Adiantum capillus-veneris mRNA, clone:
YMU001_000037_C06.
         (506 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9Y7J5|YOI9_SCHPO TBC domain-containing protein C1778.09 OS=S...    31   2.9  
sp|Q02773|RPM2_YEAST Ribonuclease P protein component, mitochond...    31   3.8  
sp|Q8TER0|SNED1_HUMAN Sushi, nidogen and EGF-like domain-contain...    30   4.9  
sp|Q8NH83|OR4A5_HUMAN Olfactory receptor 4A5 OS=Homo sapiens GN=...    30   6.5  
sp|Q9FY84|PEN2_ARATH Probable gamma-secretase subunit PEN-2 OS=A...    30   8.4  

>sp|Q9Y7J5|YOI9_SCHPO TBC domain-containing protein C1778.09
           OS=Schizosaccharomyces pombe GN=SPBC1778.09 PE=2 SV=1
          Length = 414

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 242 WVFLVSRFPTSKLIPKIYKINVSLC 168
           W FLV   P  KLI K Y++N  +C
Sbjct: 169 WSFLVDSLPDKKLIDKYYQLNEQIC 193


>sp|Q02773|RPM2_YEAST Ribonuclease P protein component,
           mitochondrial OS=Saccharomyces cerevisiae GN=RPM2 PE=1
           SV=1
          Length = 1202

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 6/47 (12%)
 Frame = +3

Query: 69  PNLKNDSMLQLI-----ASRFVS-CAPPQKKKHAALRAHTQRHIYFV 191
           PNL+NDSML+LI      S F+  C  P+K K  A++A  +  I  +
Sbjct: 853 PNLRNDSMLKLIENCESLSNFIRICDFPEKFKSIAIQAENKNAIELI 899


>sp|Q8TER0|SNED1_HUMAN Sushi, nidogen and EGF-like domain-containing
           protein 1 OS=Homo sapiens GN=SNED1 PE=1 SV=2
          Length = 1413

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 7/58 (12%)
 Frame = +3

Query: 24  CFVVNRSRVVSGGLCPNLKNDSMLQLIASRF-------VSCAPPQKKKHAALRAHTQR 176
           CF   RS  V+GG C +   D      A          V C PP++ KHA LR +  R
Sbjct: 661 CF---RSPCVNGGTCEDRDTDFFCHCQAGYMGRRCQAEVDCGPPEEVKHATLRFNGTR 715


>sp|Q8NH83|OR4A5_HUMAN Olfactory receptor 4A5 OS=Homo sapiens
           GN=OR4A5 PE=2 SV=3
          Length = 315

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -1

Query: 305 LLPCFGT*TLLCSYFCICSFVWVFLVSRFPTSKLIPKIYKI 183
           L  C    T++  +F  C F++V  VS FPT K +   Y I
Sbjct: 234 LSTCSSGSTVVVLFFVPCIFIYVRPVSNFPTDKFMTVFYTI 274


>sp|Q9FY84|PEN2_ARATH Probable gamma-secretase subunit PEN-2
           OS=Arabidopsis thaliana GN=At5g09310 PE=2 SV=1
          Length = 146

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 25/72 (34%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
 Frame = -2

Query: 436 GPIGLCGVNATAVCSLVLIQISFSFSGFPLSNPYVLPWKWVYECFY--PVLAHEHFC--V 269
           GP+GL     T   S+   +  + F GF L     LPW W   CFY  PVL H      +
Sbjct: 43  GPLGL-----TEEASVDYARRFYKF-GFAL-----LPWLWFVNCFYFWPVLRHSRAFPQI 91

Query: 268 HTFVYVHLCGFS 233
             +V     GFS
Sbjct: 92  RNYVVRSAIGFS 103
tr_hit_id B3M801
Definition tr|B3M801|B3M801_DROAN GF24229 OS=Drosophila ananassae
Align length 102
Score (bit) 35.4
E-value 1.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913868|Adiantum capillus-veneris mRNA, clone:
YMU001_000037_C06.
         (506 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B3M801|B3M801_DROAN GF24229 OS=Drosophila ananassae GN=GF2422...    35   1.6  
tr|A4H4V2|A4H4V2_LEIBR Methionine synthase, putative OS=Leishman...    35   1.6  
tr|Q6ZWI3|Q6ZWI3_HUMAN cDNA FLJ41036 fis, clone HLUNG2003872 OS=...    35   2.1  
tr|A4HT60|A4HT60_LEIIN Methionine synthase, putative OS=Leishman...    35   2.7  
tr|B7WNQ5|B7WNQ5_HUMAN Putative uncharacterized protein ENSP0000...    34   4.6  
tr|Q5ZYS7|Q5ZYS7_LEGPH Putative uncharacterized protein OS=Legio...    33   6.0  

>tr|B3M801|B3M801_DROAN GF24229 OS=Drosophila ananassae GN=GF24229
           PE=4 SV=1
          Length = 250

 Score = 35.4 bits (80), Expect = 1.6
 Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 8/102 (7%)
 Frame = -1

Query: 308 MLLPCFGT*TLL-CSYFCICSFVWVFLVS-----RFPTSKLIPKIYKINVSLCVCTQRRV 147
           MLLP  G+ + + C + C C  +W  L+S        T+ L+  IY++ +SLC      +
Sbjct: 1   MLLPTVGSASGIGCKWKCCCRRIWESLMSPISPRNLRTTALLTSIYQLLISLCA-----L 55

Query: 146 FFFLGGGTRNKPACYELEHAIILKIWTQPSGD--HPTPIHNE 27
           F  L G    +  C+ LE    L I  Q      + +P HN+
Sbjct: 56  FLVLLGLAHAEQMCHVLE----LDILDQKDNGFYNMSPFHND 93


>tr|A4H4V2|A4H4V2_LEIBR Methionine synthase, putative OS=Leishmania
           braziliensis GN=LbrM07_V2.0090 PE=4 SV=1
          Length = 1249

 Score = 35.4 bits (80), Expect = 1.6
 Identities = 18/40 (45%), Positives = 23/40 (57%)
 Frame = +1

Query: 196 FGINLLVGNLETRKTHTNEHIQKYEHRSVHVPKQGKSIHT 315
           F I L+VG   T K HT   IQ + H++VHV    KS+ T
Sbjct: 846 FKIPLMVGGATTSKQHTAVKIQPHYHKTVHVLDASKSVVT 885


>tr|Q6ZWI3|Q6ZWI3_HUMAN cDNA FLJ41036 fis, clone HLUNG2003872
           OS=Homo sapiens PE=2 SV=1
          Length = 274

 Score = 35.0 bits (79), Expect = 2.1
 Identities = 20/60 (33%), Positives = 26/60 (43%)
 Frame = -2

Query: 319 WVYECFYPVLAHEHFCVHTFVYVHLCGFSSSRGFPLVN*YQRFTK*MCLCVCARSAACFF 140
           W+  C   V AH   CVH+FVYV  C     R +   +     +   CLCVC     C +
Sbjct: 85  WILVCIC-VCAHVCTCVHSFVYVCGCVHVGMRVYLCEHVRMCVSLCACLCVCIHVRVCIY 143


>tr|A4HT60|A4HT60_LEIIN Methionine synthase, putative OS=Leishmania
           infantum GN=LinJ07.0400 PE=4 SV=1
          Length = 1252

 Score = 34.7 bits (78), Expect = 2.7
 Identities = 17/40 (42%), Positives = 24/40 (60%)
 Frame = +1

Query: 196 FGINLLVGNLETRKTHTNEHIQKYEHRSVHVPKQGKSIHT 315
           FGI L+VG   T K HT   IQ + +++VHV    K++ T
Sbjct: 849 FGIPLMVGGATTSKQHTAVKIQPHYNKTVHVLDASKAVVT 888


>tr|B7WNQ5|B7WNQ5_HUMAN Putative uncharacterized protein
           ENSP00000330035 OS=Homo sapiens PE=4 SV=1
          Length = 307

 Score = 33.9 bits (76), Expect = 4.6
 Identities = 24/66 (36%), Positives = 26/66 (39%), Gaps = 3/66 (4%)
 Frame = -2

Query: 319 WVYECF-YPVLAHEHFCV--HTFVYVHLCGFSSSRGFPLVN*YQRFTK*MCLCVCARSAA 149
           WV+ C   PV    H CV  H  V V LCG +    F  V          C CVCA    
Sbjct: 8   WVHICVCVPVCVGAHLCVWVHICVCVRLCGCT----FVCV----------CACVCACVCG 53

Query: 148 CFFFWG 131
           C   WG
Sbjct: 54  CLCVWG 59


>tr|Q5ZYS7|Q5ZYS7_LEGPH Putative uncharacterized protein
           OS=Legionella pneumophila subsp. pneumophila (strain
           Philadelphia 1 / ATCC 33152 / DSM 7513) GN=lpg0284 PE=4
           SV=1
          Length = 374

 Score = 33.5 bits (75), Expect = 6.0
 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
 Frame = +1

Query: 130 PPKKKNTRRCVHT---HRDTFIL*IFGINLLVGNLETRKTHTNEHIQKYEHRSVHVPKQG 300
           P  +K+   C+H+   HRD F L I         +  R+ HTN   +KYE++   VP+  
Sbjct: 259 PSSEKDMANCIHSLLDHRDYFDLSI---------VSEREIHTNTKRRKYENQEQEVPQPR 309

Query: 301 KSIHTPTSKAKRKDCSRESLKN 366
           +      ++    D S  +  N
Sbjct: 310 QETSNQPTETVYTDSSHNTWDN 331