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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913875
Clone id YMU001_000037_D01
Library
Length 530
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000037_D01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GGCATTTTGTCTACCAGGACCATTCATATCTGTGCCAACGGTTCTCTGACTGCTGGCGGT
CTTTAATGCCTGAGGAACGACACCATAGCTATTGCTACTGCTTTGCTTGATTACATTGTT
TGGCAGCTGCCCTGTTCCAACATACCTCGCTGACTGTGAAACAACACCGTCATACCCAAA
GCCATTTGTCCTTTCTCGAAGTACAGCAACATGAGCAGCAGTAGAAGTTTTAGCCTGCAT
TATGTCAACATGTCAACACTAGTGTTTGAAATTCAACTCTGAAAATTCTTCAAACACATA
AGCTAGGTTGTAATATACAACTTACCTTATCAAAGAAGCCCAGCTTTGGTGAAGGCATTC
TCAAGCCTGATGGTTTGGCGCTGAAAGGTATAGTTTCCGAGGCCTCTCTTTCTCTGGTGT
TAGAAATTGTGGCTTGCAATGCATTTGGTTGAGGACTACGACCACTTACTCCCTGAGAGT
GAGACGATACTGCACCAGGAGCTTGCTCCTTTCCTTTATGAAGAGATGAT
■■Homology search results ■■ -
sp_hit_id P83299
Definition sp|P83299|CAH1_CHIHA Carbonic anhydrase 1 OS=Chionodraco hamatus
Align length 37
Score (bit) 32.7
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913875|Adiantum capillus-veneris mRNA, clone:
YMU001_000037_D01.
         (530 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P83299|CAH1_CHIHA Carbonic anhydrase 1 OS=Chionodraco hamatus...    33   1.1  
sp|Q9P267|MBD5_HUMAN Methyl-CpG-binding domain protein 5 OS=Homo...    31   4.2  
sp|Q92051|CAHZ_DANRE Carbonic anhydrase OS=Danio rerio GN=cahz P...    31   4.2  
sp|P28749|RBL1_HUMAN Retinoblastoma-like protein 1 OS=Homo sapie...    30   7.2  
sp|Q96JG9|ZN469_HUMAN Zinc finger protein 469 OS=Homo sapiens GN...    30   9.4  
sp|Q3UV71|TMTC1_MOUSE Transmembrane and TPR repeat-containing pr...    30   9.4  
sp|Q640K3|NCKP1_XENLA Nck-associated protein 1 OS=Xenopus laevis...    30   9.4  
sp|P55161|NCKP1_RAT Nck-associated protein 1 OS=Rattus norvegicu...    30   9.4  
sp|P28660|NCKP1_MOUSE Nck-associated protein 1 OS=Mus musculus G...    30   9.4  
sp|Q9Y2A7|NCKP1_HUMAN Nck-associated protein 1 OS=Homo sapiens G...    30   9.4  
sp|B0S6R1|NCKP1_DANRE Nck-associated protein 1 OS=Danio rerio GN...    30   9.4  

>sp|P83299|CAH1_CHIHA Carbonic anhydrase 1 OS=Chionodraco hamatus
           GN=ca1 PE=1 SV=1
          Length = 259

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 5/37 (13%)
 Frame = +3

Query: 330 SKKPSFGEGILKPDGLALKGIV-----SEASLSLVLE 425
           +K PSFGE   KPDGLA+ G+      + ASL  VL+
Sbjct: 124 TKYPSFGEAASKPDGLAVVGVFLKIGDANASLQKVLD 160


>sp|Q9P267|MBD5_HUMAN Methyl-CpG-binding domain protein 5 OS=Homo
           sapiens GN=MBD5 PE=2 SV=2
          Length = 1494

 Score = 30.8 bits (68), Expect = 4.2
 Identities = 18/66 (27%), Positives = 34/66 (51%)
 Frame = -3

Query: 213 HVAVLRERTNGFGYDGVVSQSARYVGTGQLPNNVIKQSSSNSYGVVPQALKTASSQRTVG 34
           H+A L  +    G  G++SQS   +G    PN    + S++S  V+P ++ ++ +Q +  
Sbjct: 779 HLAGLINQIQASGNCGMLSQSGMALGNSLHPNPPQSRISTSSTPVIPNSIVSSYNQTSSE 838

Query: 33  TDMNGP 16
              +GP
Sbjct: 839 AGGSGP 844


>sp|Q92051|CAHZ_DANRE Carbonic anhydrase OS=Danio rerio GN=cahz PE=1
           SV=2
          Length = 260

 Score = 30.8 bits (68), Expect = 4.2
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +3

Query: 300 KLGCNIQLTL--SKKPSFGEGILKPDGLALKGI 392
           K  C + L    +K P+FGE   KPDGLA+ G+
Sbjct: 113 KFPCELHLVHWNTKYPNFGEAASKPDGLAVVGV 145


>sp|P28749|RBL1_HUMAN Retinoblastoma-like protein 1 OS=Homo sapiens
           GN=RBL1 PE=1 SV=3
          Length = 1068

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
 Frame = +3

Query: 270 NSTLKILQTHKLGCNIQLTLSKK--PSFGEGILKPDGLALKGIVSEASLSLV 419
           N +L+   TH L C++ +   K   P+ G+GI++ + ++L  I+  A LSL+
Sbjct: 48  NYSLEGEVTHWLACSLYVACRKSIIPTVGKGIMEGNCVSLTRILRSAKLSLI 99


>sp|Q96JG9|ZN469_HUMAN Zinc finger protein 469 OS=Homo sapiens
            GN=ZNF469 PE=1 SV=3
          Length = 3925

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
 Frame = -2

Query: 529  SSLHKGKEQAPGAVSSHSQGVSGRSPQ-PNALQATISNTREREASETIPFSAKPSGLRMP 353
            SS  + K Q PG   S S G  GR+P  P+    T    ++   S  +P   KP+    P
Sbjct: 3785 SSTKRKKGQVPGPARSESVGSFGRAPSAPDKPPRT--PRKQATPSRVLPTKPKPNSQNKP 3842

Query: 352  SP 347
             P
Sbjct: 3843 RP 3844


>sp|Q3UV71|TMTC1_MOUSE Transmembrane and TPR repeat-containing
           protein 1 OS=Mus musculus GN=Tmtc1 PE=2 SV=1
          Length = 942

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 20/61 (32%), Positives = 26/61 (42%)
 Frame = -2

Query: 529 SSLHKGKEQAPGAVSSHSQGVSGRSPQPNALQATISNTREREASETIPFSAKPSGLRMPS 350
           S  HK  + + GAV  HS G  G SPQP++ QA   +       +  P      G   P 
Sbjct: 235 SPSHKQDKLSNGAVCQHSSGQPG-SPQPSSQQA---HPHRESRKQRFPHKDSWGGCHSPL 290

Query: 349 P 347
           P
Sbjct: 291 P 291


>sp|Q640K3|NCKP1_XENLA Nck-associated protein 1 OS=Xenopus laevis
           GN=nckap1 PE=2 SV=1
          Length = 1128

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +3

Query: 30  LCQRFSDCWRSLMPEERHH 86
           LC  F  C   L PEERHH
Sbjct: 572 LCTHFMSCTHELCPEERHH 590


>sp|P55161|NCKP1_RAT Nck-associated protein 1 OS=Rattus norvegicus
           GN=Nckap1 PE=2 SV=1
          Length = 1128

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +3

Query: 30  LCQRFSDCWRSLMPEERHH 86
           LC  F  C   L PEERHH
Sbjct: 572 LCTHFMSCTHELCPEERHH 590


>sp|P28660|NCKP1_MOUSE Nck-associated protein 1 OS=Mus musculus
           GN=Nckap1 PE=2 SV=2
          Length = 1128

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +3

Query: 30  LCQRFSDCWRSLMPEERHH 86
           LC  F  C   L PEERHH
Sbjct: 572 LCTHFMSCTHELCPEERHH 590


>sp|Q9Y2A7|NCKP1_HUMAN Nck-associated protein 1 OS=Homo sapiens
           GN=NCKAP1 PE=1 SV=1
          Length = 1128

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +3

Query: 30  LCQRFSDCWRSLMPEERHH 86
           LC  F  C   L PEERHH
Sbjct: 572 LCTHFMSCTHELCPEERHH 590
tr_hit_id A7PSY9
Definition tr|A7PSY9|A7PSY9_VITVI Chromosome chr8 scaffold_29, whole genome shotgun sequence OS=Vitis vinifera
Align length 29
Score (bit) 43.5
E-value 0.007
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913875|Adiantum capillus-veneris mRNA, clone:
YMU001_000037_D01.
         (530 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7PSY9|A7PSY9_VITVI Chromosome chr8 scaffold_29, whole genome...    44   0.007
tr|B8AXC5|B8AXC5_ORYSI Putative uncharacterized protein OS=Oryza...    40   0.056
tr|A3AZF7|A3AZF7_ORYSJ Putative uncharacterized protein OS=Oryza...    40   0.056
tr|Q60F39|Q60F39_ORYSJ Os05g0121800 protein OS=Oryza sativa subs...    40   0.074
tr|Q9LFI5|Q9LFI5_ARATH Putative uncharacterized protein F4P12_20...    39   0.16 
tr|A5AFE4|A5AFE4_VITVI Putative uncharacterized protein OS=Vitis...    37   0.81 
tr|B6LRG9|B6LRG9_BRAFL Putative uncharacterized protein OS=Branc...    36   1.1  
tr|Q2QYY0|Q2QYY0_ORYSJ Expressed protein OS=Oryza sativa subsp. ...    35   1.8  
tr|Q0IQS6|Q0IQS6_ORYSJ Os12g0102700 protein OS=Oryza sativa subs...    35   1.8  
tr|B8BLS5|B8BLS5_ORYSI Putative uncharacterized protein OS=Oryza...    35   1.8  
tr|B4FGR1|B4FGR1_MAIZE Putative uncharacterized protein OS=Zea m...    35   1.8  
tr|A3CE35|A3CE35_ORYSJ Putative uncharacterized protein OS=Oryza...    35   1.8  
tr|Q6FBJ8|Q6FBJ8_ACIAD Porin OS=Acinetobacter sp. (strain ADP1) ...    35   2.4  
tr|A9TAL7|A9TAL7_PHYPA Predicted protein OS=Physcomitrella paten...    35   2.4  
tr|B6KWY8|B6KWY8_BRAFL Putative uncharacterized protein OS=Branc...    35   2.4  
tr|Q7N9J5|Q7N9J5_PHOLL Pmt2 protein OS=Photorhabdus luminescens ...    35   3.1  
tr|Q7N9H7|Q7N9H7_PHOLL Pmt1 protein OS=Photorhabdus luminescens ...    35   3.1  
tr|Q8GDN1|Q8GDN1_PHOLU Pmt1 OS=Photorhabdus luminescens GN=pmt1 ...    35   3.1  
tr|A4HGL3|A4HGL3_LEIBR Helicase-like protein OS=Leishmania brazi...    35   3.1  
tr|A5ABQ0|A5ABQ0_ASPNC Similarity to hypothetical protein SPBC23...    34   4.0  
tr|Q2RBQ3|Q2RBQ3_ORYSJ Expressed protein OS=Oryza sativa subsp. ...    33   6.9  
tr|Q0IV98|Q0IV98_ORYSJ Os11g0103100 protein OS=Oryza sativa subs...    33   6.9  
tr|A6MD10|A6MD10_9ORYZ Homeodomain transcription factor OS=Oryza...    33   6.9  
tr|A3C7S5|A3C7S5_ORYSJ Putative uncharacterized protein OS=Oryza...    33   6.9  
tr|Q9ZQC4|Q9ZQC4_ARATH Putative uncharacterized protein At2g3707...    33   9.0  
tr|B7FXL8|B7FXL8_PHATR Predicted protein OS=Phaeodactylum tricor...    33   9.0  

>tr|A7PSY9|A7PSY9_VITVI Chromosome chr8 scaffold_29, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00023138001
           PE=4 SV=1
          Length = 508

 Score = 43.5 bits (101), Expect = 0.007
 Identities = 20/29 (68%), Positives = 22/29 (75%)
 Frame = -2

Query: 388 PFSAKPSGLRMPSPKLGFFDKVSCILQPS 302
           P S KPSGLRMPSPK+GFFD VS    P+
Sbjct: 480 PASTKPSGLRMPSPKIGFFDGVSKPFPPN 508


>tr|B8AXC5|B8AXC5_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_18251 PE=4 SV=1
          Length = 614

 Score = 40.4 bits (93), Expect = 0.056
 Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 4/63 (6%)
 Frame = -2

Query: 496 GAVSSHSQGVSGRSPQPNALQATISNTRE----REASETIPFSAKPSGLRMPSPKLGFFD 329
           G +S  S+  S RS   ++L  ++ N+ +    R  ++T    +KPSGLRMP+PK+G+FD
Sbjct: 413 GKMSHTSESFSTRS---SSLSPSLRNSNDHAPTRADADTQGKGSKPSGLRMPTPKIGYFD 469

Query: 328 KVS 320
             S
Sbjct: 470 AKS 472


>tr|A3AZF7|A3AZF7_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_016179 PE=4 SV=1
          Length = 624

 Score = 40.4 bits (93), Expect = 0.056
 Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 4/63 (6%)
 Frame = -2

Query: 496 GAVSSHSQGVSGRSPQPNALQATISNTRE----REASETIPFSAKPSGLRMPSPKLGFFD 329
           G +S  S+  S RS   ++L  ++ N+ +    R  ++T    +KPSGLRMP+PK+G+FD
Sbjct: 423 GKMSHTSESFSTRS---SSLSPSLRNSNDHAPTRADADTQGKGSKPSGLRMPTPKIGYFD 479

Query: 328 KVS 320
             S
Sbjct: 480 AKS 482


>tr|Q60F39|Q60F39_ORYSJ Os05g0121800 protein OS=Oryza sativa subsp.
           japonica GN=OJ1001_G01.13 PE=4 SV=1
          Length = 613

 Score = 40.0 bits (92), Expect = 0.074
 Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 4/60 (6%)
 Frame = -2

Query: 496 GAVSSHSQGVSGRSPQPNALQATISNTRE----REASETIPFSAKPSGLRMPSPKLGFFD 329
           G +S  S+  S RS   ++L  ++ N+ +    R  ++T    +KPSGLRMP+PK+G+FD
Sbjct: 413 GKMSHTSESFSTRS---SSLSPSLRNSNDHAPTRADADTQGKGSKPSGLRMPTPKIGYFD 469


>tr|Q9LFI5|Q9LFI5_ARATH Putative uncharacterized protein F4P12_20
           (At3g53320) (Putative uncharacterized protein
           At3g53320/F4P12_20) OS=Arabidopsis thaliana GN=F4P12_20
           PE=2 SV=1
          Length = 553

 Score = 38.9 bits (89), Expect = 0.16
 Identities = 16/18 (88%), Positives = 18/18 (100%)
 Frame = -2

Query: 382 SAKPSGLRMPSPKLGFFD 329
           SAKPSGLR+PSPK+GFFD
Sbjct: 473 SAKPSGLRVPSPKIGFFD 490


>tr|A5AFE4|A5AFE4_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_016383 PE=4 SV=1
          Length = 760

 Score = 36.6 bits (83), Expect = 0.81
 Identities = 15/24 (62%), Positives = 19/24 (79%)
 Frame = -2

Query: 400 SETIPFSAKPSGLRMPSPKLGFFD 329
           S  +  ++KPS LRMPSPK+GFFD
Sbjct: 486 SPNVSGNSKPSSLRMPSPKIGFFD 509


>tr|B6LRG9|B6LRG9_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_120475 PE=4 SV=1
          Length = 2971

 Score = 36.2 bits (82), Expect = 1.1
 Identities = 18/46 (39%), Positives = 26/46 (56%)
 Frame = -2

Query: 523 LHKGKEQAPGAVSSHSQGVSGRSPQPNALQATISNTREREASETIP 386
           LHK +E+A GA+    Q V G   +P  +Q    NT E++  ET+P
Sbjct: 55  LHKDREEADGAI----QAVPGAQKEPQQVQEGQENTGEQQKDETVP 96


>tr|Q2QYY0|Q2QYY0_ORYSJ Expressed protein OS=Oryza sativa subsp.
           japonica GN=LOC_Os12g01220 PE=4 SV=2
          Length = 803

 Score = 35.4 bits (80), Expect = 1.8
 Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
 Frame = -2

Query: 514 GKEQAPGAVSSHSQGVSGR------SP--QPNALQATISNTREREASETIPFSAKPSGLR 359
           GK+  P  V++  Q  +G       SP  Q N   + ++  R          SAKPS LR
Sbjct: 273 GKDMVPPTVTTICQETNGSGKCETFSPYSQDNPSSSVVAPAR---------ISAKPSALR 323

Query: 358 MPSPKLGFF 332
           MPSP +GFF
Sbjct: 324 MPSPSVGFF 332


>tr|Q0IQS6|Q0IQS6_ORYSJ Os12g0102700 protein OS=Oryza sativa subsp.
           japonica GN=Os12g0102700 PE=4 SV=1
          Length = 814

 Score = 35.4 bits (80), Expect = 1.8
 Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
 Frame = -2

Query: 514 GKEQAPGAVSSHSQGVSGR------SP--QPNALQATISNTREREASETIPFSAKPSGLR 359
           GK+  P  V++  Q  +G       SP  Q N   + ++  R          SAKPS LR
Sbjct: 258 GKDMVPPTVTTICQETNGSGKCETFSPYSQDNPSSSVVAPAR---------ISAKPSALR 308

Query: 358 MPSPKLGFF 332
           MPSP +GFF
Sbjct: 309 MPSPSVGFF 317


>tr|B8BLS5|B8BLS5_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_37126 PE=4 SV=1
          Length = 1065

 Score = 35.4 bits (80), Expect = 1.8
 Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
 Frame = -2

Query: 514 GKEQAPGAVSSHSQGVSGR------SP--QPNALQATISNTREREASETIPFSAKPSGLR 359
           GK+  P  V++  Q  +G       SP  Q N   + ++  R          SAKPS LR
Sbjct: 509 GKDMVPPTVTTICQETNGSGKCETFSPYSQDNPSSSVVAPAR---------ISAKPSALR 559

Query: 358 MPSPKLGFF 332
           MPSP +GFF
Sbjct: 560 MPSPSVGFF 568