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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913879
Clone id YMU001_000037_D06
Library
Length 334
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000037_D06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GAGAGCCGTAACAGCTCCTCTTCCAAGTCCTGGCGTTTCTGTAAAACCTCCTCATGATAA
TGAGGAGGTGAACTGAGAGCACCTCTTGTTCCTTGGGAATCAATCACCTCATCAATCAGT
CTCCAGGATCCAAAATCCATGCTGGTTTGCTCATTGTGTACCGGTTCCACTAATCCGTGC
TGCTTGCTCCTAGCAATTTCGGCACCACTAAAGGGTTGTTTGAGAGGTCCTATAGAATCT
TCCCGGTCGGACGACACTTCATAAGTCGCAGAAGTTCTTGGACTGGCTGCTGCTGAATCA
GATTGAATGCCACTTGGAGGTGTATGTCCTTTGC
■■Homology search results ■■ -
sp_hit_id O14261
Definition sp|O14261|TAF1_SCHPO Taz1-interacting factor 1 OS=Schizosaccharomyces pombe
Align length 103
Score (bit) 31.6
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913879|Adiantum capillus-veneris mRNA, clone:
YMU001_000037_D06.
         (334 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O14261|TAF1_SCHPO Taz1-interacting factor 1 OS=Schizosaccharo...    32   1.3  
sp|Q29EQ3|RNO_DROPS PHD finger protein rhinoceros OS=Drosophila ...    31   2.2  
sp|O60293|ZC3H1_HUMAN Zinc finger C3H1 domain-containing protein...    30   2.9  
sp|O74526|KJ45_SCHPO Probable serine/threonine-protein kinase C7...    30   2.9  
sp|Q99PS0|K1C23_MOUSE Keratin, type I cytoskeletal 23 OS=Mus mus...    30   2.9  
sp|Q5M7E0|CR019_XENLA Uncharacterized protein C18orf19 homolog O...    30   2.9  
sp|O65649|FPP5_ARATH Filament-like plant protein 5 OS=Arabidopsi...    30   3.8  
sp|Q4IFH8|HIR3_GIBZE Histone transcription regulator 3 homolog O...    30   4.9  
sp|A4IJ20|CR019_XENTR Uncharacterized protein C18orf19 homolog O...    29   6.4  
sp|O14095|YERC_SCHPO Thioredoxin domain-containing protein C2F3....    29   8.4  
sp|B1W5H1|UREG1_STRGG Urease accessory protein ureG 1 OS=Strepto...    29   8.4  
sp|P40068|FLO8_YEAST Transcriptional activator FLO8 OS=Saccharom...    29   8.4  
sp|O01501|CCNE_CAEEL G1/S-specific cyclin-E OS=Caenorhabditis el...    29   8.4  
sp|P0C0X6|BCHZ_RHOSH Chlorophyllide reductase subunit Z (Fragmen...    29   8.4  

>sp|O14261|TAF1_SCHPO Taz1-interacting factor 1
           OS=Schizosaccharomyces pombe GN=taf1 PE=1 SV=2
          Length = 926

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 30/103 (29%), Positives = 49/103 (47%)
 Frame = -3

Query: 320 PPSGIQSDSAAASPRTSATYEVSSDREDSIGPLKQPFSGAEIARSKQHGLVEPVHNEQTS 141
           PP   QS+S+    R S +  V  +    +   K  F+ + I R     L + V+  +  
Sbjct: 514 PPINEQSNSSQPFYRVSPSI-VPLNVIRKLTNRKTSFTDSHILR-----LQDEVNQLRNE 567

Query: 140 MDFGSWRLIDEVIDSQGTRGALSSPPHYHEEVLQKRQDLEEEL 12
           +D  + R  D +I+ QG    +      +EEVLQK ++L+EEL
Sbjct: 568 LDLVNKRNEDLLIELQGKEEKIQYLETENEEVLQKYENLQEEL 610


>sp|Q29EQ3|RNO_DROPS PHD finger protein rhinoceros OS=Drosophila
            pseudoobscura pseudoobscura GN=rno PE=3 SV=2
          Length = 3313

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 21/73 (28%), Positives = 34/73 (46%)
 Frame = -3

Query: 281  PRTSATYEVSSDREDSIGPLKQPFSGAEIARSKQHGLVEPVHNEQTSMDFGSWRLIDEVI 102
            P T+ T + S+++     P K   +  +I    Q       H  Q+S D GS ++  E +
Sbjct: 1473 PLTARTRQNSTNKSPKRVPQKS-VATVDIQDDAQSAPKTHSHRRQSSPDEGSKQVQSEQV 1531

Query: 101  DSQGTRGALSSPP 63
              + TRG+ S PP
Sbjct: 1532 TKRATRGSKSRPP 1544


>sp|O60293|ZC3H1_HUMAN Zinc finger C3H1 domain-containing protein
            OS=Homo sapiens GN=ZFC3H1 PE=1 SV=3
          Length = 1989

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
 Frame = -3

Query: 332  KGHTPPSGIQSDSAAASPR----TSATYEVSSDREDSIGPLKQPF 210
            KGHTPP     D     P+      +    SSD E S GP+K  F
Sbjct: 1273 KGHTPPFTTYKDKRKWKPKFWRKPISDNSFSSDEEQSTGPIKYAF 1317


>sp|O74526|KJ45_SCHPO Probable serine/threonine-protein kinase
           C70.05c OS=Schizosaccharomyces pombe GN=SPCC70.05c PE=1
           SV=1
          Length = 781

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 17/71 (23%), Positives = 33/71 (46%)
 Frame = -3

Query: 311 GIQSDSAAASPRTSATYEVSSDREDSIGPLKQPFSGAEIARSKQHGLVEPVHNEQTSMDF 132
           G  +++A  SP ++ + E +     +  P+K P + +EI R  + G + P          
Sbjct: 381 GSSANTAPNSPTSANSSEGNQGNGPTTYPIKPPTNISEIPRKLKSGFIPPYAKRVVPRLS 440

Query: 131 GSWRLIDEVID 99
             ++L+DE  D
Sbjct: 441 AKYKLVDETKD 451


>sp|Q99PS0|K1C23_MOUSE Keratin, type I cytoskeletal 23 OS=Mus
           musculus GN=Krt23 PE=2 SV=1
          Length = 422

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 29/100 (29%), Positives = 43/100 (43%), Gaps = 3/100 (3%)
 Frame = -3

Query: 305 QSDSAAASPRTSATYEVSSDREDSIGPLKQPFSGAEIARSKQHGLVEPVHNEQTSMDFG- 129
           +  SAA +   ++   V  ++ D I  L++ F   EI    QH     + N  T      
Sbjct: 264 REQSAAMAQEVASPAPVQGNQSD-IHELRRTFQALEIDLQAQHSRKTALENMLTETRARY 322

Query: 128 SWRLID--EVIDSQGTRGALSSPPHYHEEVLQKRQDLEEE 15
           S RL D  ++I             HY EE++Q RQDLE +
Sbjct: 323 SCRLQDMQQIIS------------HYEEELIQLRQDLERQ 350


>sp|Q5M7E0|CR019_XENLA Uncharacterized protein C18orf19 homolog
           OS=Xenopus laevis PE=2 SV=1
          Length = 275

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 30/77 (38%), Positives = 41/77 (53%), Gaps = 9/77 (11%)
 Frame = -3

Query: 326 HTPPSGIQSDSAAASP--RTSATYEVSSDRED------SIGPLKQPFSGAEIARSKQHG- 174
           H  PSGIQ  S   SP  R+S + + SS  E+      SIG LK+ F        +QHG 
Sbjct: 69  HDLPSGIQHQSEETSPSARSSISTDPSSIAEEDPLQDQSIGLLKR-FK----KTFRQHGK 123

Query: 173 LVEPVHNEQTSMDFGSW 123
           ++ PVH   +S+ FGS+
Sbjct: 124 VLIPVHLVTSSIWFGSF 140


>sp|O65649|FPP5_ARATH Filament-like plant protein 5 OS=Arabidopsis
            thaliana GN=FPP5 PE=2 SV=2
          Length = 996

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
 Frame = -3

Query: 248  DREDSIGPLKQPFSGAEIARSKQHGLVEPVHNEQTSMDFGSWRLIDEVI----DSQGTRG 81
            ++E  I  LK   + +E  +S     ++ V     S+D  +  L  +V     +++    
Sbjct: 777  EKEQLISKLKSQLTSSEDLQSLAETQLKCVTESYKSLDLHAKELEAKVKSLEEETKRLEM 836

Query: 80   ALSSPPHYHEEVLQKRQDLEEELLR 6
            A ++  H HEE L K +DL+E++ R
Sbjct: 837  AFTTEKHGHEETLAKCRDLQEKMQR 861


>sp|Q4IFH8|HIR3_GIBZE Histone transcription regulator 3 homolog
            OS=Gibberella zeae GN=HIR3 PE=3 SV=1
          Length = 2020

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 8/87 (9%)
 Frame = -3

Query: 332  KGHTPPSGIQSDSAAASPRTSATYEVSSD--------REDSIGPLKQPFSGAEIARSKQH 177
            +G    SG  SDS+A+S  T A+   SSD          D+    KQ  S ++ A     
Sbjct: 797  QGTDSESGEDSDSSASSDTTGASTLDSSDDSTDDNDESSDASSNQKQKKSISDCASQSLK 856

Query: 176  GLVEPVHNEQTSMDFGSWRLIDEVIDS 96
             L + +HN  T +    W  + +  D+
Sbjct: 857  DLWKFLHNSSTELRLFLWSRLGDAYDA 883


>sp|A4IJ20|CR019_XENTR Uncharacterized protein C18orf19 homolog
           OS=Xenopus tropicalis PE=2 SV=1
          Length = 274

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 28/77 (36%), Positives = 36/77 (46%), Gaps = 9/77 (11%)
 Frame = -3

Query: 326 HTPPSGIQSDSAAASPR--------TSATYEVSSDREDSIGPLKQPFSGAEIARSKQHG- 174
           H  PSG Q  S  +SP         TS   E    ++ SIG LK+ F        KQHG 
Sbjct: 69  HDLPSGSQHQSEESSPSAKSSISTDTSIVAETDPLQDQSIGLLKR-FK----KTFKQHGK 123

Query: 173 LVEPVHNEQTSMDFGSW 123
           ++ PVH   +S  FGS+
Sbjct: 124 VLIPVHLVTSSFWFGSF 140


>sp|O14095|YERC_SCHPO Thioredoxin domain-containing protein C2F3.12c
           OS=Schizosaccharomyces pombe GN=SPAC2F3.12c PE=1 SV=2
          Length = 279

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -3

Query: 263 YEVSSDREDSIGPLKQPFSGAEIARSKQHGLVEPVHNEQTSMDF 132
           ++ ++ RE  +  LK+ F+  E A+ K H     V NE+  MDF
Sbjct: 106 FDDTAYREQRLEMLKKEFARVEAAKEKGHMQFLTVENEREVMDF 149
tr_hit_id Q9LQI8
Definition tr|Q9LQI8|Q9LQI8_ARATH F28G4.18 protein OS=Arabidopsis thaliana
Align length 98
Score (bit) 37.7
E-value 0.29
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913879|Adiantum capillus-veneris mRNA, clone:
YMU001_000037_D06.
         (334 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9LQI8|Q9LQI8_ARATH F28G4.18 protein OS=Arabidopsis thaliana ...    38   0.29 
tr|Q9LNS2|Q9LNS2_ARATH F1L3.1 OS=Arabidopsis thaliana PE=4 SV=1        38   0.29 
tr|Q9LVH8|Q9LVH8_ARATH Genomic DNA, chromosome 3, P1 clone: MEB5...    37   0.65 
tr|B3H486|B3H486_ARATH Uncharacterized protein At3g17920.2 OS=Ar...    37   0.65 
tr|A9SUK4|A9SUK4_PHYPA Predicted protein OS=Physcomitrella paten...    35   1.5  
tr|B6M824|B6M824_BRAFL Putative uncharacterized protein OS=Branc...    35   1.9  
tr|B0QXF6|B0QXF6_HAEPR Putative uncharacterized protein OS=Haemo...    33   7.2  
tr|Q2U2J2|Q2U2J2_ASPOR Predicted protein OS=Aspergillus oryzae G...    33   7.2  
tr|Q9LP70|Q9LP70_ARATH T1N15.16 OS=Arabidopsis thaliana PE=4 SV=1      33   7.2  
tr|Q3ECU5|Q3ECU5_ARATH Uncharacterized protein At1g48540.1 OS=Ar...    33   7.2  
tr|Q304C8|Q304C8_ARATH Uncharacterized protein At1g48540.2 OS=Ar...    33   7.2  
tr|Q756M7|Q756M7_ASHGO AER227Wp OS=Ashbya gossypii GN=AER227W PE...    33   7.2  
tr|Q2GWD5|Q2GWD5_CHAGB Putative uncharacterized protein OS=Chaet...    33   7.2  
tr|A3XNQ7|A3XNQ7_9FLAO Beta-galactosidase OS=Leeuwenhoekiella bl...    33   9.4  
tr|B6K8J5|B6K8J5_TOXGO Putative uncharacterized protein OS=Toxop...    33   9.4  

>tr|Q9LQI8|Q9LQI8_ARATH F28G4.18 protein OS=Arabidopsis thaliana
           GN=F28G4.18 PE=4 SV=1
          Length = 1061

 Score = 37.7 bits (86), Expect = 0.29
 Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
 Frame = -3

Query: 308 IQSDSAAASPRTSATYEVSSDREDSIGPLKQPFSGAEIARSKQHGLVEPVHNEQTSMDFG 129
           I+SD   +  R    +   SD++ ++    +P S     R K  G+ + + N   +  F 
Sbjct: 416 IKSDERQSKGRKKELFP--SDKKQALTSPPKPVSAGSEQRQKSFGVEDDLVNADAAGKFD 473

Query: 128 SWRLIDEVID-SQGTRGALSSPPHYHEEVLQKRQDLEE 18
             R+    +D +Q TR    SPP +++E+  K QDLE+
Sbjct: 474 KNRVRATSVDQTQRTRMPRESPPGFNDELKIKAQDLEK 511


>tr|Q9LNS2|Q9LNS2_ARATH F1L3.1 OS=Arabidopsis thaliana PE=4 SV=1
          Length = 1068

 Score = 37.7 bits (86), Expect = 0.29
 Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
 Frame = -3

Query: 308 IQSDSAAASPRTSATYEVSSDREDSIGPLKQPFSGAEIARSKQHGLVEPVHNEQTSMDFG 129
           I+SD   +  R    +   SD++ ++    +P S     R K  G+ + + N   +  F 
Sbjct: 423 IKSDERQSKGRKKELFP--SDKKQALTSPPKPVSAGSEQRQKSFGVEDDLVNADAAGKFD 480

Query: 128 SWRLIDEVID-SQGTRGALSSPPHYHEEVLQKRQDLEE 18
             R+    +D +Q TR    SPP +++E+  K QDLE+
Sbjct: 481 KNRVRATSVDQTQRTRMPRESPPGFNDELKIKAQDLEK 518


>tr|Q9LVH8|Q9LVH8_ARATH Genomic DNA, chromosome 3, P1 clone: MEB5
           OS=Arabidopsis thaliana PE=4 SV=1
          Length = 1035

 Score = 36.6 bits (83), Expect = 0.65
 Identities = 18/43 (41%), Positives = 28/43 (65%)
 Frame = -3

Query: 131 GSWRLIDEVIDSQGTRGALSSPPHYHEEVLQKRQDLEEELLRL 3
           G+   +D   D  G+    SSPPHY ++VL +RQ+L EE+L++
Sbjct: 506 GNMSTLDASQDMTGSFSP-SSPPHYQKDVLHRRQNLVEEILQI 547


>tr|B3H486|B3H486_ARATH Uncharacterized protein At3g17920.2
           OS=Arabidopsis thaliana GN=At3g17920 PE=4 SV=1
          Length = 880

 Score = 36.6 bits (83), Expect = 0.65
 Identities = 18/43 (41%), Positives = 28/43 (65%)
 Frame = -3

Query: 131 GSWRLIDEVIDSQGTRGALSSPPHYHEEVLQKRQDLEEELLRL 3
           G+   +D   D  G+    SSPPHY ++VL +RQ+L EE+L++
Sbjct: 376 GNMSTLDASQDMTGSFSP-SSPPHYQKDVLHRRQNLVEEILQI 417


>tr|A9SUK4|A9SUK4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_166644 PE=4 SV=1
          Length = 793

 Score = 35.4 bits (80), Expect = 1.5
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = -3

Query: 92  GTRGALSSPPHYHEEVLQKRQDLEEELLRL 3
           G  G  +SPPHY  +++ +RQ L  E+LRL
Sbjct: 532 GNNGLPASPPHYDSDLMHRRQSLVNEMLRL 561


>tr|B6M824|B6M824_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_79297 PE=4 SV=1
          Length = 887

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
 Frame = -3

Query: 305 QSDSAAASPRTSATYEVSSDREDSIGPLKQPFSGAEIARSKQHG-LVEPVHNEQTSMDFG 129
           +S S A+SPR+ A   +S D   S GP     +GA+ AR K+HG L+ P +  Q +   G
Sbjct: 19  ESSSTASSPRSVAFPALSGDAATS-GPFVVKLAGAKNARKKRHGCLIRPGYARQDASAEG 77

Query: 128 SWRLIDEVIDSQGTRGALSSPP 63
             +   +  DS   +  L   P
Sbjct: 78  P-KTNPDAQDSPALKSTLIEEP 98


>tr|B0QXF6|B0QXF6_HAEPR Putative uncharacterized protein
           OS=Haemophilus parasuis 29755 GN=HPS_09275 PE=4 SV=1
          Length = 315

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 15/27 (55%), Positives = 20/27 (74%)
 Frame = +2

Query: 227 VL*NLPGRTTLHKSQKFLDWLLLNQIE 307
           V+ NLPGRTT+ + Q +L+WLL   IE
Sbjct: 122 VVTNLPGRTTITRLQTYLNWLLNELIE 148


>tr|Q2U2J2|Q2U2J2_ASPOR Predicted protein OS=Aspergillus oryzae
           GN=AO090038000434 PE=3 SV=1
          Length = 344

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 77  EHLLFLGN-QSPHQSVSRIQNPCWFAHCVPVPLIRAACS 190
           +H+L L + QS  QS S  QNP  F H +P PLI A  S
Sbjct: 84  KHILTLSSIQSQSQSQSSSQNPLPFTHPLPTPLIHALSS 122


>tr|Q9LP70|Q9LP70_ARATH T1N15.16 OS=Arabidopsis thaliana PE=4 SV=1
          Length = 924

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 13/23 (56%), Positives = 19/23 (82%)
 Frame = -3

Query: 71  SPPHYHEEVLQKRQDLEEELLRL 3
           SPPHY ++VL +R +L EE+L+L
Sbjct: 587 SPPHYQKDVLYRRHNLVEEILQL 609


>tr|Q3ECU5|Q3ECU5_ARATH Uncharacterized protein At1g48540.1
           OS=Arabidopsis thaliana GN=At1g48540 PE=4 SV=1
          Length = 1063

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 13/23 (56%), Positives = 19/23 (82%)
 Frame = -3

Query: 71  SPPHYHEEVLQKRQDLEEELLRL 3
           SPPHY ++VL +R +L EE+L+L
Sbjct: 587 SPPHYQKDVLYRRHNLVEEILQL 609