NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913888
Clone id YMU001_000037_E03
Library
Length 415
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000037_E03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CTCTCATGGCTACAACACGCACCTTCTNATGTGTTCATTCCCACTGGGTGAGATTGGAGT
TGGTAGAGGTTGGTCAAATGCAGCCATGAGAGCCCATATTGAGCTGAGCTCAAGTCTCTT
CATCTGTTTGGCCACAAGAGGAACTCCAATTGGTCCAAGCAAGCGATTAGCGCACTTTCC
GTTGTGCGCTATGATAACGATATCGAATTCACCTTGACGGTTCTCATACTCACTAAGGTG
CCATCTTCCATCCAACTCCTTCACCCTGCTTATCCAGCAAGGTCGTACAACATCAATCAA
TTCTCTCTTTGAAACCAAATGATCTGCAAACAAACGCATTCCATTGGTCGCAATATACTT
CATTGATGATTGAAGTTCTGTGAACTTTCCCCCCATTTCCAAAGTCCCAACAACC
■■Homology search results ■■ -
sp_hit_id Q7G3T8
Definition sp|Q7G3T8|BGL13_ORYSJ Beta-galactosidase 13 OS=Oryza sativa subsp. japonica
Align length 55
Score (bit) 28.9
E-value 8.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913888|Adiantum capillus-veneris mRNA, clone:
YMU001_000037_E03.
         (415 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q7G3T8|BGL13_ORYSJ Beta-galactosidase 13 OS=Oryza sativa subs...    29   8.4  
sp|Q60974|NCOR1_MOUSE Nuclear receptor corepressor 1 OS=Mus musc...    29   8.4  

>sp|Q7G3T8|BGL13_ORYSJ Beta-galactosidase 13 OS=Oryza sativa subsp.
           japonica GN=Os10g0330600 PE=2 SV=1
          Length = 828

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = -2

Query: 282 PCWISRVKELDGRWHLSEYENRQGEFDIVIIAHNGKCANRLLGPIGVPLVAKQMK 118
           P W+  + ++  R H + +EN    F  +II +  K AN   G  G P++  Q++
Sbjct: 133 PAWLRDIPQMQFRMHNAPFENEMENFTTLII-NKMKDANMFAGQ-GGPIILAQIE 185


>sp|Q60974|NCOR1_MOUSE Nuclear receptor corepressor 1 OS=Mus
           musculus GN=Ncor1 PE=1 SV=1
          Length = 2453

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +3

Query: 246 FHPTPSPCLSSKVVQHQSILSLKPNDLQTNAFHWSQYTSLMIEVL*TFP 392
           FHP PSP      V H S+ S +P   Q +  H+ + ++ ++ ++ T P
Sbjct: 92  FHPGPSP------VDHDSLESKRPRLEQVSDSHFQRISAAVLPLVHTLP 134
tr_hit_id Q9SR09
Definition tr|Q9SR09|Q9SR09_ARATH F7O18.13 protein (At3g04650/F7O18_13) OS=Arabidopsis thaliana
Align length 120
Score (bit) 158.0
E-value 1.0e-37
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913888|Adiantum capillus-veneris mRNA, clone:
YMU001_000037_E03.
         (415 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9SR09|Q9SR09_ARATH F7O18.13 protein (At3g04650/F7O18_13) OS=...   158   1e-37
tr|A7QMQ3|A7QMQ3_VITVI Chromosome undetermined scaffold_127, who...   148   2e-34
tr|A9RS95|A9RS95_PHYPA Predicted protein OS=Physcomitrella paten...   147   3e-34
tr|Q2QMN9|Q2QMN9_ORYSJ Os12g0597400 protein OS=Oryza sativa subs...   140   2e-32
tr|A3CJ42|A3CJ42_ORYSJ Putative uncharacterized protein OS=Oryza...   140   2e-32
tr|A2ZMD1|A2ZMD1_ORYSI Putative uncharacterized protein OS=Oryza...   140   2e-32
tr|A5C3T9|A5C3T9_VITVI Putative uncharacterized protein OS=Vitis...   120   4e-26
tr|A8IX63|A8IX63_CHLRE Predicted protein (Fragment) OS=Chlamydom...   113   5e-24
tr|B4FNM5|B4FNM5_MAIZE Putative uncharacterized protein OS=Zea m...   102   7e-21
tr|B6L512|B6L512_BRAFL Putative uncharacterized protein OS=Branc...    69   9e-11
tr|B6L4Z9|B6L4Z9_BRAFL Putative uncharacterized protein OS=Branc...    69   9e-11
tr|B6L4Z8|B6L4Z8_BRAFL Putative uncharacterized protein OS=Branc...    69   9e-11
tr|A4S0V0|A4S0V0_OSTLU Predicted protein OS=Ostreococcus lucimar...    53   7e-06
tr|B8GNB6|B8GNB6_9GAMM Putative transmembrane protein OS=Thioalk...    50   6e-05
tr|Q1GUF6|Q1GUF6_SPHAL Putative uncharacterized protein OS=Sphin...    44   0.004
tr|Q014E3|Q014E3_OSTTA Homology to unknown gene OS=Ostreococcus ...    43   0.007
tr|Q3K6Y5|Q3K6Y5_PSEPF FAD dependent oxidoreductase OS=Pseudomon...    42   0.012
tr|Q4K6B1|Q4K6B1_PSEF5 Putative uncharacterized protein OS=Pseud...    40   0.058
tr|Q888A4|Q888A4_PSESM Amine oxidase, flavin-containing OS=Pseud...    38   0.22 
tr|Q4ZXV1|Q4ZXV1_PSEU2 Amine oxidase, flavin-containing OS=Pseud...    38   0.22 
tr|A4BD95|A4BD95_9GAMM FAD dependent oxidoreductase OS=Reinekea ...    37   0.38 
tr|Q9HVD5|Q9HVD5_PSEAE Putative uncharacterized protein OS=Pseud...    37   0.64 
tr|Q48MT7|Q48MT7_PSE14 Putative uncharacterized protein OS=Pseud...    37   0.64 
tr|Q02G17|Q02G17_PSEAB Putative oxidoreductase OS=Pseudomonas ae...    37   0.64 
tr|B7V0K3|B7V0K3_PSEAE Putative oxidoreductase OS=Pseudomonas ae...    37   0.64 
tr|A3LKB1|A3LKB1_PSEAE Putative uncharacterized protein OS=Pseud...    37   0.64 
tr|A3L3L3|A3L3L3_PSEAE Putative uncharacterized protein OS=Pseud...    37   0.64 
tr|A9KTZ8|A9KTZ8_SHEB9 4Fe-4S ferredoxin iron-sulfur binding dom...    36   0.84 
tr|A6WTT1|A6WTT1_SHEB8 4Fe-4S ferredoxin iron-sulfur binding dom...    36   0.84 
tr|A6VC53|A6VC53_PSEA7 Putative uncharacterized protein OS=Pseud...    36   0.84 

>tr|Q9SR09|Q9SR09_ARATH F7O18.13 protein (At3g04650/F7O18_13)
           OS=Arabidopsis thaliana GN=At3g04650 PE=2 SV=1
          Length = 486

 Score =  158 bits (400), Expect = 1e-37
 Identities = 73/120 (60%), Positives = 97/120 (80%), Gaps = 2/120 (1%)
 Frame = -2

Query: 411 VGTLEMGGKFTELQSSM--KYIATNGMRLFADHLVSKRELIDVVRPCWISRVKELDGRWH 238
           VG LE+GG F++  SS   +YIA NGMR  AD L+ + +++++VRPCWIS+++ L+G WH
Sbjct: 178 VGELEIGGSFSQFPSSSPPRYIAANGMRSLADSLLLESQMVNLVRPCWISKLEPLNGMWH 237

Query: 237 LSEYENRQGEFDIVIIAHNGKCANRLLGPIGVPLVAKQMKRLELSSIWALMAAFDQPLPT 58
           LSE    +G+FD+++IAHNGKCANRLL   G+PLVAKQMK+L+LSSIWAL+AAFD PLPT
Sbjct: 238 LSENGTPRGQFDVIVIAHNGKCANRLLSASGLPLVAKQMKKLDLSSIWALLAAFDDPLPT 297


>tr|A7QMQ3|A7QMQ3_VITVI Chromosome undetermined scaffold_127, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00002164001 PE=4 SV=1
          Length = 467

 Score =  148 bits (373), Expect = 2e-34
 Identities = 68/121 (56%), Positives = 91/121 (75%), Gaps = 1/121 (0%)
 Frame = -2

Query: 414 VVGTLEMGGKFTELQS-SMKYIATNGMRLFADHLVSKRELIDVVRPCWISRVKELDGRWH 238
           ++G LE+GG+F  L S   +YI  NGMR  AD ++S+  +++VVRPCWIS++   +G WH
Sbjct: 158 MIGELEVGGQFVPLPSLPPRYIGVNGMRPLADSILSQTTMVNVVRPCWISKLDPFNGMWH 217

Query: 237 LSEYENRQGEFDIVIIAHNGKCANRLLGPIGVPLVAKQMKRLELSSIWALMAAFDQPLPT 58
           LSE     G++D ++IAHNGKCAN LL   G+PLVA+QMK+LELSSIWAL+AAF+ PLP 
Sbjct: 218 LSENGKPHGQYDAIVIAHNGKCANHLLASSGLPLVARQMKKLELSSIWALLAAFEDPLPI 277

Query: 57  P 55
           P
Sbjct: 278 P 278


>tr|A9RS95|A9RS95_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_118689 PE=4 SV=1
          Length = 439

 Score =  147 bits (370), Expect = 3e-34
 Identities = 72/121 (59%), Positives = 88/121 (72%), Gaps = 1/121 (0%)
 Frame = -2

Query: 414 VVGTLEMGGKFTELQSSM-KYIATNGMRLFADHLVSKRELIDVVRPCWISRVKELDGRWH 238
           VVG L+ GGK+++L   + +Y+ T GMR  ADH+VS+  LI+V RP WIS +      WH
Sbjct: 126 VVGKLQAGGKYSDLADDVPRYVGTYGMRPLADHMVSRGRLIEVKRPVWISNMDAKGPLWH 185

Query: 237 LSEYENRQGEFDIVIIAHNGKCANRLLGPIGVPLVAKQMKRLELSSIWALMAAFDQPLPT 58
           L+E     GEFD V+IAHNGKCANRLL P G P V KQMKRLELSSIWAL+AAF++PLP 
Sbjct: 186 LNENGKPHGEFDAVVIAHNGKCANRLLAPSGAPEVFKQMKRLELSSIWALLAAFEEPLPL 245

Query: 57  P 55
           P
Sbjct: 246 P 246


>tr|Q2QMN9|Q2QMN9_ORYSJ Os12g0597400 protein OS=Oryza sativa subsp.
           japonica GN=Os12g0597400 PE=2 SV=1
          Length = 497

 Score =  140 bits (354), Expect = 2e-32
 Identities = 65/126 (51%), Positives = 91/126 (72%), Gaps = 2/126 (1%)
 Frame = -2

Query: 414 VVGTLEMGGKFTELQSSM--KYIATNGMRLFADHLVSKRELIDVVRPCWISRVKELDGRW 241
           ++G L+ GG F  + SS   +YI  +GMR  AD ++ + +LI+VVRPCWIS+++  +G W
Sbjct: 180 LIGELDAGGHFRPMPSSSPPRYIGVDGMRPLADAILPESDLIEVVRPCWISKLEPFNGLW 239

Query: 240 HLSEYENRQGEFDIVIIAHNGKCANRLLGPIGVPLVAKQMKRLELSSIWALMAAFDQPLP 61
            L E E   G++D ++IAHNGKCANRLL   G+PL+ +QMKRL+LSS+WAL+AAF  PLP
Sbjct: 240 RLFENEKPHGQYDAIVIAHNGKCANRLLSTSGLPLLTRQMKRLQLSSVWALLAAFQDPLP 299

Query: 60  TPISPS 43
            P + S
Sbjct: 300 IPQTDS 305


>tr|A3CJ42|A3CJ42_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_035314 PE=4 SV=1
          Length = 553

 Score =  140 bits (354), Expect = 2e-32
 Identities = 65/126 (51%), Positives = 91/126 (72%), Gaps = 2/126 (1%)
 Frame = -2

Query: 414 VVGTLEMGGKFTELQSSM--KYIATNGMRLFADHLVSKRELIDVVRPCWISRVKELDGRW 241
           ++G L+ GG F  + SS   +YI  +GMR  AD ++ + +LI+VVRPCWIS+++  +G W
Sbjct: 164 LIGELDAGGHFRPMPSSSPPRYIGVDGMRPLADAILPESDLIEVVRPCWISKLEPFNGLW 223

Query: 240 HLSEYENRQGEFDIVIIAHNGKCANRLLGPIGVPLVAKQMKRLELSSIWALMAAFDQPLP 61
            L E E   G++D ++IAHNGKCANRLL   G+PL+ +QMKRL+LSS+WAL+AAF  PLP
Sbjct: 224 RLFENEKPHGQYDAIVIAHNGKCANRLLSTSGLPLLTRQMKRLQLSSVWALLAAFQDPLP 283

Query: 60  TPISPS 43
            P + S
Sbjct: 284 IPQTDS 289


>tr|A2ZMD1|A2ZMD1_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_38983 PE=4 SV=1
          Length = 497

 Score =  140 bits (354), Expect = 2e-32
 Identities = 65/126 (51%), Positives = 91/126 (72%), Gaps = 2/126 (1%)
 Frame = -2

Query: 414 VVGTLEMGGKFTELQSSM--KYIATNGMRLFADHLVSKRELIDVVRPCWISRVKELDGRW 241
           ++G L+ GG F  + SS   +YI  +GMR  AD ++ + +LI+VVRPCWIS+++  +G W
Sbjct: 180 LIGELDAGGHFRPMPSSSPPRYIGVDGMRPLADAILPESDLIEVVRPCWISKLEPFNGLW 239

Query: 240 HLSEYENRQGEFDIVIIAHNGKCANRLLGPIGVPLVAKQMKRLELSSIWALMAAFDQPLP 61
            L E E   G++D ++IAHNGKCANRLL   G+PL+ +QMKRL+LSS+WAL+AAF  PLP
Sbjct: 240 RLFENEKPHGQYDAIVIAHNGKCANRLLSTSGLPLLTRQMKRLQLSSVWALLAAFQDPLP 299

Query: 60  TPISPS 43
            P + S
Sbjct: 300 IPQTDS 305


>tr|A5C3T9|A5C3T9_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_000598 PE=4 SV=1
          Length = 2691

 Score =  120 bits (300), Expect = 4e-26
 Identities = 52/85 (61%), Positives = 67/85 (78%)
 Frame = -2

Query: 309 KRELIDVVRPCWISRVKELDGRWHLSEYENRQGEFDIVIIAHNGKCANRLLGPIGVPLVA 130
           K  +++VVRPCWIS++   +G WHLSE     G++D ++IAHNGKCAN LL   G+PLVA
Sbjct: 509 KTTMVNVVRPCWISKLDPFNGMWHLSENGKPHGQYDAIVIAHNGKCANHLLASSGLPLVA 568

Query: 129 KQMKRLELSSIWALMAAFDQPLPTP 55
           +QMK+LELSSIWAL+AAF+ PLP P
Sbjct: 569 RQMKKLELSSIWALLAAFEDPLPIP 593


>tr|A8IX63|A8IX63_CHLRE Predicted protein (Fragment)
           OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_147470 PE=4
           SV=1
          Length = 417

 Score =  113 bits (282), Expect = 5e-24
 Identities = 60/126 (47%), Positives = 81/126 (64%), Gaps = 9/126 (7%)
 Frame = -2

Query: 411 VGTLEMG-GKFTELQSSM-KYIATNGMRLFADHLVSKRE------LIDVVRPCWISRVKE 256
           VGTL  G G F  L  S  +Y+A  GMR  A+ L  + E      L++  RPCW+ +++ 
Sbjct: 110 VGTLRAGAGAFARLPPSPPRYVAVGGMRRLAEALGEQLEAGGGSSLVEFRRPCWVGKMQA 169

Query: 255 LDGR-WHLSEYENRQGEFDIVIIAHNGKCANRLLGPIGVPLVAKQMKRLELSSIWALMAA 79
            +GR W LS     QG +D V++AHNGKCANRL+GP G P VA+Q+ RL+L+++W LM A
Sbjct: 170 EEGRGWALSGEGRSQGVYDAVVVAHNGKCANRLVGPTGAPKVAEQLMRLKLNAVWCLMVA 229

Query: 78  FDQPLP 61
           FD PLP
Sbjct: 230 FDGPLP 235


>tr|B4FNM5|B4FNM5_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 310

 Score =  102 bits (255), Expect = 7e-21
 Identities = 53/118 (44%), Positives = 68/118 (57%), Gaps = 32/118 (27%)
 Frame = -2

Query: 300 LIDVVRPCWISRVKELDGRWHLSEYENRQGEFDIVIIAHNGKCANRLLGPIGVPLVAKQM 121
           +I V+RPCWIS+++  +G W L E E  +GE+D V+IAHNGKCANRLL   G+PL+ KQM
Sbjct: 1   MIKVLRPCWISKLEPFNGLWRLFENEKPRGEYDAVVIAHNGKCANRLLSTSGLPLLTKQM 60

Query: 120 K--------------------------------RLELSSIWALMAAFDQPLPTPISPS 43
           K                                RLELSS+WAL+AAF+ PLP P+  S
Sbjct: 61  KVPWFYYCNNFLTHEAYILLFLLLTKFPAVNDQRLELSSVWALLAAFEDPLPIPLLDS 118


>tr|B6L512|B6L512_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_118062 PE=4 SV=1
          Length = 276

 Score = 69.3 bits (168), Expect = 9e-11
 Identities = 40/133 (30%), Positives = 70/133 (52%), Gaps = 14/133 (10%)
 Frame = -2

Query: 411 VGTLEMGGKFTELQSSMKYIATNGMRLFADHLVSKRELIDVVRPCWISRV--KELDGRWH 238
           +G L+ GG+F +  +   ++ T GM+   + L +   L  V RP W+  V  + +  +W 
Sbjct: 96  IGVLK-GGRFVKNANLQAFVGTGGMKSVPECLAT---LSRVQRPAWVGNVVWEPMAKKWK 151

Query: 237 LSEYENRQGEFDIVIIAHNGKCANRLLGPIGVPLV------------AKQMKRLELSSIW 94
           + +Y    G FD ++IAHNGKCA+RL+G  G P +             +++++++L S+W
Sbjct: 152 VDKY----GYFDYLVIAHNGKCADRLMGSAGAPKIHELLRVRFTPKLIQKVQQMQLCSLW 207

Query: 93  ALMAAFDQPLPTP 55
            L+  F   L  P
Sbjct: 208 VLLVVFPASLKLP 220