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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913890
Clone id YMU001_000037_E05
Library
Length 578
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000037_E05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CGGGCAGATGTTGTACCTCTTTCTTGAAAGGCAAGGTGGGATGAGCTCATGCAGGAGTTT
GACTTCTAGATACTCTAGCGTAAGGGTGCTACCAATAAGGTAGCTAGTGTCCCTAGTAGA
ATTGTAGGTTAACACTCTTTCGTTTGTTGAAATTTAGACTGACTTCTATCTTTCTCTCAA
AGGGCGTTGCCAAAATTATCGTCACTTTAGTGCAATTTGGCAATGAGTCCAAGAGGGTTT
ATTAGCCCGGAAACGTATGGATGACCGACCGTCCCTGAGCTGGCTACGGAGAGAAAGGTA
GCGGAGAAGTATTCCGTTCGTAATGGATTACTTTTCAAGCAAGGCAAAGTGTGTGTGCTT
GTTGATGAGGTTATCCGCAAGCAAATTTTGTTCGAGCGTCATGATGCACCAAGTGCAAGA
TACCCTGGCATATGTCACGAGGACGTGGCAACTGCTAACCTTAGTTGTTGGTTTCTTTCT
AATGATTTTCGTTTAATTTTGAAGAACCTCTTTTTGAAGCTATAGATGGTCGGACATTGT
ATGGCAAGTGTGTGAAACCGTAGTTTCACTTGTAGATG
■■Homology search results ■■ -
sp_hit_id Q9UR07
Definition sp|Q9UR07|RTF23_SCHPO Retrotransposable element Tf2 155 kDa protein type 3 OS=Schizosaccharomyces pombe
Align length 32
Score (bit) 31.2
E-value 3.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913890|Adiantum capillus-veneris mRNA, clone:
YMU001_000037_E05.
         (578 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9UR07|RTF23_SCHPO Retrotransposable element Tf2 155 kDa prot...    31   3.9  
sp|Q9C0R2|RTF22_SCHPO Retrotransposable element Tf2 155 kDa prot...    31   3.9  
sp|Q05654|RTF21_SCHPO Retrotransposable element Tf2 155 kDa prot...    31   3.9  

>sp|Q9UR07|RTF23_SCHPO Retrotransposable element Tf2 155 kDa protein
           type 3 OS=Schizosaccharomyces pombe GN=Tf2-11 PE=4 SV=1
          Length = 1333

 Score = 31.2 bits (69), Expect = 3.9
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +1

Query: 31  ARWDELMQEFDF*IL*RKGATNKVASVPSRIV 126
           ARW   +Q+F+F I  R G+ N +A   SRIV
Sbjct: 802 ARWQLFLQDFNFEINYRPGSANHIADALSRIV 833


>sp|Q9C0R2|RTF22_SCHPO Retrotransposable element Tf2 155 kDa protein
           type 2 OS=Schizosaccharomyces pombe GN=Tf2-7 PE=2 SV=1
          Length = 1333

 Score = 31.2 bits (69), Expect = 3.9
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +1

Query: 31  ARWDELMQEFDF*IL*RKGATNKVASVPSRIV 126
           ARW   +Q+F+F I  R G+ N +A   SRIV
Sbjct: 802 ARWQLFLQDFNFEINYRPGSANHIADALSRIV 833


>sp|Q05654|RTF21_SCHPO Retrotransposable element Tf2 155 kDa protein
           type 1 OS=Schizosaccharomyces pombe GN=Tf2-1 PE=2 SV=1
          Length = 1333

 Score = 31.2 bits (69), Expect = 3.9
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +1

Query: 31  ARWDELMQEFDF*IL*RKGATNKVASVPSRIV 126
           ARW   +Q+F+F I  R G+ N +A   SRIV
Sbjct: 802 ARWQLFLQDFNFEINYRPGSANHIADALSRIV 833
tr_hit_id A8PIR5
Definition tr|A8PIR5|A8PIR5_COPC7 Putative uncharacterized protein OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003)
Align length 83
Score (bit) 40.8
E-value 0.054
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913890|Adiantum capillus-veneris mRNA, clone:
YMU001_000037_E05.
         (578 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8PIR5|A8PIR5_COPC7 Putative uncharacterized protein OS=Copri...    41   0.054
tr|A8N570|A8N570_COPC7 Putative uncharacterized protein OS=Copri...    39   0.16 
tr|A7BIS0|A7BIS0_LENED Pro-pol protein (Fragment) OS=Lentinula e...    39   0.21 
tr|Q9SJ92|Q9SJ92_ARATH Putative retroelement pol polyprotein OS=...    38   0.35 
tr|Q7XNM2|Q7XNM2_ORYSA OSJNBb0068N06.8 protein OS=Oryza sativa G...    38   0.35 
tr|A8NSX6|A8NSX6_COPC7 Putative uncharacterized protein OS=Copri...    38   0.35 
tr|A8PDK1|A8PDK1_COPC7 Putative uncharacterized protein OS=Copri...    37   0.60 
tr|A8PAD9|A8PAD9_COPC7 Putative uncharacterized protein OS=Copri...    37   0.60 
tr|A8P8V2|A8P8V2_COPC7 Putative uncharacterized protein OS=Copri...    37   0.60 
tr|A8P0M8|A8P0M8_COPC7 Putative uncharacterized protein OS=Copri...    37   0.60 
tr|A8NK21|A8NK21_COPC7 Putative uncharacterized protein OS=Copri...    37   0.60 
tr|A8PHI1|A8PHI1_COPC7 Putative uncharacterized protein OS=Copri...    37   0.79 
tr|A8PD32|A8PD32_COPC7 Putative uncharacterized protein OS=Copri...    37   0.79 
tr|A8PBY1|A8PBY1_COPC7 Putative uncharacterized protein OS=Copri...    37   0.79 
tr|A8NT13|A8NT13_COPC7 Putative uncharacterized protein OS=Copri...    37   0.79 
tr|A8NMK1|A8NMK1_COPC7 Putative uncharacterized protein OS=Copri...    37   0.79 
tr|A8NM25|A8NM25_COPC7 Putative uncharacterized protein OS=Copri...    37   0.79 
tr|A8NKP9|A8NKP9_COPC7 Putative uncharacterized protein OS=Copri...    37   0.79 
tr|A8NE38|A8NE38_COPC7 Putative uncharacterized protein OS=Copri...    37   0.79 
tr|A8ND58|A8ND58_COPC7 Putative uncharacterized protein OS=Copri...    37   0.79 
tr|A8N801|A8N801_COPC7 Putative uncharacterized protein OS=Copri...    37   0.79 
tr|A8N4Z8|A8N4Z8_COPC7 Putative uncharacterized protein OS=Copri...    37   0.79 
tr|Q7F958|Q7F958_ORYSJ OSJNBa0094P09.6 protein OS=Oryza sativa s...    37   1.0  
tr|A8PIY1|A8PIY1_COPC7 Putative uncharacterized protein OS=Copri...    37   1.0  
tr|A8PHJ6|A8PHJ6_COPC7 Putative uncharacterized protein OS=Copri...    37   1.0  
tr|A8PHJ2|A8PHJ2_COPC7 Putative uncharacterized protein OS=Copri...    37   1.0  
tr|A8PH55|A8PH55_COPC7 Putative uncharacterized protein OS=Copri...    37   1.0  
tr|A8PEB4|A8PEB4_COPC7 Putative uncharacterized protein OS=Copri...    37   1.0  
tr|A8PD50|A8PD50_COPC7 Putative uncharacterized protein OS=Copri...    37   1.0  
tr|A8PBV5|A8PBV5_COPC7 Putative uncharacterized protein OS=Copri...    37   1.0  

>tr|A8PIR5|A8PIR5_COPC7 Putative uncharacterized protein
           OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC
           9003) GN=CC1G_13416 PE=4 SV=1
          Length = 849

 Score = 40.8 bits (94), Expect = 0.054
 Identities = 23/83 (27%), Positives = 45/83 (54%)
 Frame = +1

Query: 322 NGLLFKQGKVCVLVDEVIRKQILFERHDAPSARYPGICHEDVATANLSCWFLSNDFRLIL 501
           NGL++ +G+V V  D+ +R+ +L + HD P++ +PG+ H  +       W+ +   R  +
Sbjct: 449 NGLVYYKGRVYVPPDDELRRDVLKQCHDDPTSGHPGV-HGTLERVERQYWWPT--VRAFV 505

Query: 502 KNLFLKL*MVGHCMASV*NRSFT 570
           KN  + + M+    +S    SF+
Sbjct: 506 KNFLMPMDMMPSSSSSTTTASFS 528


>tr|A8N570|A8N570_COPC7 Putative uncharacterized protein
           OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC
           9003) GN=CC1G_04452 PE=4 SV=1
          Length = 446

 Score = 39.3 bits (90), Expect = 0.16
 Identities = 16/47 (34%), Positives = 32/47 (68%)
 Frame = +1

Query: 292 RKVAEKYSVRNGLLFKQGKVCVLVDEVIRKQILFERHDAPSARYPGI 432
           R+ + + S  NGL++ +G+V V  D+ +R+ +L + HD P++ +PG+
Sbjct: 131 RRASARESQDNGLVYYKGRVYVPPDDELRRDVLKQCHDDPTSGHPGV 177


>tr|A7BIS0|A7BIS0_LENED Pro-pol protein (Fragment) OS=Lentinula edodes
            PE=4 SV=1
          Length = 1274

 Score = 38.9 bits (89), Expect = 0.21
 Identities = 38/156 (24%), Positives = 69/156 (44%), Gaps = 7/156 (4%)
 Frame = +1

Query: 28   KARWDELMQEFDF*IL*RKGATNKVASVPSRIVG*HSFVC*NLD*LLSFSQRALPKLSSL 207
            +ARW   +  FDF ++ R G  N  A   SR+   H     +             K+++L
Sbjct: 719  QARWALYLSRFDFHMIHRPGRVNTQADALSRMAVHHVSDSDDNRQQTVLKPGHFVKIAAL 778

Query: 208  *CNLAMSPRGFISPETY-----G*PTVPELATERKV--AEKYSVRNGLLFKQGKVCVLVD 366
                 +  R   + E       G  TV E   +R      ++   NGL++ +G+V V  +
Sbjct: 779  ILQNPLEDRIRKASEREAQVLEGLKTVKEHGLQRLANGIAEWEEDNGLVYYRGRVYVPAN 838

Query: 367  EVIRKQILFERHDAPSARYPGICHEDVATANLSCWF 474
            + +R ++L + HD P+A +PG+ H  +   + + W+
Sbjct: 839  DDLRTEVLRQCHDHPTAGHPGL-HGTLDLVSTNFWW 873


>tr|Q9SJ92|Q9SJ92_ARATH Putative retroelement pol polyprotein
            OS=Arabidopsis thaliana GN=At2g04670 PE=2 SV=1
          Length = 1411

 Score = 38.1 bits (87), Expect = 0.35
 Identities = 41/144 (28%), Positives = 62/144 (43%), Gaps = 12/144 (8%)
 Frame = +1

Query: 34   RWDELMQEFDF*IL*RKGATNKVASVPSRIVG*HSFVC*NLD*LLSFSQRAL-PKLSSL* 210
            RW EL+ ++D  I    G  N VA   SR           +      S  AL  ++ +L 
Sbjct: 899  RWMELVADYDLEIAYHPGKANVVADALSRK---------RVGAAPGQSVEALVSEIGALR 949

Query: 211  -CNLAMSPRGFISPETYG*PTVPELATER----------KVAEKYSVRNGLLFKQGKVCV 357
             C +A  P G  + +     T   LA E+          + +E     NG +F  G+VCV
Sbjct: 950  LCVVAREPLGLEAVDRADLLTRARLAQEKDEGLIAASKAEGSEYQFAANGTIFVYGRVCV 1009

Query: 358  LVDEVIRKQILFERHDAPSARYPG 429
              DE +R++IL E H +  + +PG
Sbjct: 1010 PKDEELRREILSEAHASMFSIHPG 1033


>tr|Q7XNM2|Q7XNM2_ORYSA OSJNBb0068N06.8 protein OS=Oryza sativa
            GN=OSJNBb0068N06.8 PE=4 SV=2
          Length = 947

 Score = 38.1 bits (87), Expect = 0.35
 Identities = 38/151 (25%), Positives = 66/151 (43%), Gaps = 19/151 (12%)
 Frame = +1

Query: 34   RWDELMQEFDF*IL*RKGATNKVASVPSRIVG*HSFVC*NLD*LLSFSQRALPKLSSL*C 213
            RW EL++++D  I    G  N VA   SR    ++     +   L+    AL        
Sbjct: 744  RWLELIKDYDVGIHYHPGKANVVADTLSRKSHCNTLGIRGIPPELNQQMEAL-------- 795

Query: 214  NLAMSPRGFIS-------------------PETYG*PTVPELATERKVAEKYSVRNGLLF 336
            NL++  RGF++                   P+ +G   + +   +RK A      +G L+
Sbjct: 796  NLSIVGRGFLATLEAKPTLLDRIREAQKNDPDIHG---ILKNMKQRKAAGFTEDEHGTLW 852

Query: 337  KQGKVCVLVDEVIRKQILFERHDAPSARYPG 429
               +VCV  D+ +++ IL E H++P + +PG
Sbjct: 853  NGNRVCVPDDKELKRLILQEAHESPYSIHPG 883


>tr|A8NSX6|A8NSX6_COPC7 Putative uncharacterized protein
            OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC
            9003) GN=CC1G_12273 PE=4 SV=1
          Length = 1328

 Score = 38.1 bits (87), Expect = 0.35
 Identities = 20/63 (31%), Positives = 37/63 (58%)
 Frame = +1

Query: 322  NGLLFKQGKVCVLVDEVIRKQILFERHDAPSARYPGICHEDVATANLSCWFLSNDFRLIL 501
            NGL++ +G+V V  D+ +R+ IL + HD P++ +PG+ H  +       W+ +   R  +
Sbjct: 871  NGLVYYKGRVYVPPDDELRRNILKQCHDDPTSGHPGV-HGTLERVERQYWWPT--MRAFV 927

Query: 502  KNL 510
            KN+
Sbjct: 928  KNI 930


>tr|A8PDK1|A8PDK1_COPC7 Putative uncharacterized protein
           OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC
           9003) GN=CC1G_11261 PE=4 SV=1
          Length = 338

 Score = 37.4 bits (85), Expect = 0.60
 Identities = 19/67 (28%), Positives = 38/67 (56%)
 Frame = +1

Query: 307 KYSVRNGLLFKQGKVCVLVDEVIRKQILFERHDAPSARYPGICHEDVATANLSCWFLSND 486
           ++   NGL++ +G+V V  D+ +R+ +L + HD P++ +PG+ H  +       W+ +  
Sbjct: 50  EWEEENGLVYYKGRVYVPPDDELRRDVLKQCHDDPTSGHPGV-HGTLERVERQYWWPT-- 106

Query: 487 FRLILKN 507
            R  +KN
Sbjct: 107 MRAFVKN 113


>tr|A8PAD9|A8PAD9_COPC7 Putative uncharacterized protein
            OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC
            9003) GN=CC1G_06162 PE=4 SV=1
          Length = 764

 Score = 37.4 bits (85), Expect = 0.60
 Identities = 35/145 (24%), Positives = 68/145 (46%), Gaps = 10/145 (6%)
 Frame = +1

Query: 28   KARWDELMQEFDF*IL*RKGATNKVASVPSRIVG*HSFVC*NLD*LLSFSQRALPKLSSL 207
            +ARW   +  F F +  R G TN  A   SR+         +    +        KL++ 
Sbjct: 611  QARWALYLSRFKFFLTHRPGKTNTQADALSRLDTHQVTDAEDNRQQVVLKPEYFAKLAA- 669

Query: 208  *CNLAMSP-----RGFISPETYG*PTVPELATE--RKVAE---KYSVRNGLLFKQGKVCV 357
              ++ ++P     R   + ET+    + +L T   R++     ++   NGL++ +G+V V
Sbjct: 670  -AHMLVNPLEQRIRNASTRETHVLEGLAQLRTSGPRRLVNGLAEWEEENGLVYYKGRVYV 728

Query: 358  LVDEVIRKQILFERHDAPSARYPGI 432
              D+ +R+ +L + HD P++ +PG+
Sbjct: 729  PPDDELRRDVLKQCHDDPTSGHPGV 753


>tr|A8P8V2|A8P8V2_COPC7 Putative uncharacterized protein
           OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC
           9003) GN=CC1G_11352 PE=4 SV=1
          Length = 1115

 Score = 37.4 bits (85), Expect = 0.60
 Identities = 15/42 (35%), Positives = 29/42 (69%)
 Frame = +1

Query: 307 KYSVRNGLLFKQGKVCVLVDEVIRKQILFERHDAPSARYPGI 432
           ++   NGL++ +G+V V  D+ +R+ +L + HD P++ +PGI
Sbjct: 621 EWEEENGLVYYKGRVYVPPDDELRRDVLKQCHDDPTSGHPGI 662


>tr|A8P0M8|A8P0M8_COPC7 Putative uncharacterized protein
           OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC
           9003) GN=CC1G_11971 PE=4 SV=1
          Length = 932

 Score = 37.4 bits (85), Expect = 0.60
 Identities = 16/51 (31%), Positives = 31/51 (60%)
 Frame = +1

Query: 322 NGLLFKQGKVCVLVDEVIRKQILFERHDAPSARYPGICHEDVATANLSCWF 474
           NGL++ +G+V V  D+ +R+ +L + HD P++ +PG+ H  +       W+
Sbjct: 707 NGLVYYKGRVYVPPDDELRRDVLKQCHDDPTSGHPGV-HRTLERVERQYWW 756