BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913899|Adiantum capillus-veneris mRNA, clone:
YMU001_000037_F02.
         (517 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P40987|CIN1_YEAST Chromosome instability protein 1 OS=Sacchar...    32   2.3  
sp|A3M419|SYC_ACIBT Cysteinyl-tRNA synthetase OS=Acinetobacter b...    30   6.7  

>sp|P40987|CIN1_YEAST Chromosome instability protein 1
           OS=Saccharomyces cerevisiae GN=CIN1 PE=1 SV=1
          Length = 1014

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 27/126 (21%), Positives = 53/126 (42%)
 Frame = -1

Query: 490 RDYQEVTLTIRST*KNKDT*P*HYCVWIKLRDWEHHWSSVGRQAKKQQ*LQHVFAYLFWP 311
           R ++E +  IR     ++T     CVW   RDW  +W+           L+++       
Sbjct: 439 RSFEENSGLIRRLFNPENTSKSAVCVWKVFRDWSFNWNL----------LENLH---LTT 485

Query: 310 TKISSFKPISQFLTGFLSSSTLQKKVFSKSAPILKYITQTACRL*SRSCRFLQTYFDLYE 131
            K++    +   +   LSS  L ++V +K+   +           +++C+ L  Y  L+E
Sbjct: 486 MKLNIDYNLVPLIKSKLSSPALLQEVLNKAGSSV-----------TQNCQILYLYLKLFE 534

Query: 130 QLISCP 113
             ++CP
Sbjct: 535 NDVNCP 540


>sp|A3M419|SYC_ACIBT Cysteinyl-tRNA synthetase OS=Acinetobacter
           baumannii (strain ATCC 17978 / NCDC KC 755) GN=cysS PE=3
           SV=2
          Length = 473

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -3

Query: 389 APLELSGEAGKEATITTTRFCISILAYQNIFIQANLAIPDRVFV 258
           +P+  S  A KEA  + TRF  S  AYQ ++ Q      D+ F+
Sbjct: 304 SPVNFSDVALKEAKTSLTRFYHSFKAYQQVYGQTTTEALDQSFI 347

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913899|Adiantum capillus-veneris mRNA, clone:
YMU001_000037_F02.
         (517 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A0C6V8|A0C6V8_PARTE Chromosome undetermined scaffold_153, who...    37   0.58 
tr|Q8M904|Q8M904_9ASTR Maturase K (Fragment) OS=Stylidium bulbif...    36   1.3  
tr|Q719G0|Q719G0_9ASTR Maturase K (Fragment) OS=Stylidium majus ...    35   2.2  

>tr|A0C6V8|A0C6V8_PARTE Chromosome undetermined scaffold_153, whole
           genome shotgun sequence OS=Paramecium tetraurelia
           GN=GSPATT00035654001 PE=4 SV=1
          Length = 425

 Score = 37.0 bits (84), Expect = 0.58
 Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
 Frame = +3

Query: 180 NLQAV*VMYFKIGADFEKTFFCKVE------EDKNPVRNCEIGLNEDILVGQNRYAKTCC 341
           N Q + ++ F+  ++FEK  FC+ E      +  +P  NC   L + I + QN      C
Sbjct: 208 NNQCLKIVIFQTSSNFEKCTFCQTEFCKICRQKSHPDINCNENLKQFIGIPQNNERLVQC 267

Query: 342 SYCCFFACLPTELQWCSQ-SLSFIQTQ*C*G 431
             C F   L  ++  CSQ + S+ + Q C G
Sbjct: 268 PRCKF---LIEKIDGCSQITCSYCKCQWCWG 295


>tr|Q8M904|Q8M904_9ASTR Maturase K (Fragment) OS=Stylidium
           bulbiferum GN=matK PE=3 SV=1
          Length = 477

 Score = 35.8 bits (81), Expect = 1.3
 Identities = 36/132 (27%), Positives = 61/132 (46%), Gaps = 20/132 (15%)
 Frame = -1

Query: 364 QAKKQQ*LQHVFAYLFWPTKISSFKPISQF------LTGFLSSSTLQKKVFSKSAPILKY 203
           +AK    L H  + + W   +S F  I +F      L+ + S S+ +K+++      +KY
Sbjct: 349 EAKFCNLLGHPISKVVW-ADLSDFDIIDRFGRIYRNLSHYHSGSSQEKRLYG-----IKY 402

Query: 202 ITQTAC-RL*SR-------------SCRFLQTYFDLYEQLISCPFPSPQPFSRDLQLCRR 65
           I + +C R  +R             S + L+ +F   EQ++S  FP    FSR L   R 
Sbjct: 403 ILRLSCVRTLARKHKSTGRAFLKRLSSKLLEEFFTAEEQILSLTFPKSSSFSRQLYKRRI 462

Query: 64  KFLQILHSLRDI 29
            +L I+ S+ D+
Sbjct: 463 WYLDII-SINDL 473


>tr|Q719G0|Q719G0_9ASTR Maturase K (Fragment) OS=Stylidium majus
           GN=matK PE=3 SV=1
          Length = 335

 Score = 35.0 bits (79), Expect = 2.2
 Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 14/106 (13%)
 Frame = -1

Query: 304 ISSFKPISQFLTGFLSSSTLQKKVFSKSAPILKYITQTAC-RL*SR-------------S 167
           I  F  I +  + + S S+ +K ++      +KYI + +C R  +R             S
Sbjct: 233 IDRFGRIYRNRSHYRSGSSQEKSLYG-----IKYILRLSCVRTLARKHKSTGRAFLKRLS 287

Query: 166 CRFLQTYFDLYEQLISCPFPSPQPFSRDLQLCRRKFLQILHSLRDI 29
            + L+ +F   EQ++S  FP P  FSR L   R  +L I+ S+ D+
Sbjct: 288 SKLLEEFFTAEEQILSLTFPKPSSFSRQLYKRRIWYLDII-SINDL 332