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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913907
Clone id YMU001_000037_F10
Library
Length 595
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000037_F10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GGCAACGAGGAGTTGCAGGGTGTGAGACCCTAACCCTATTGCCCTCCATGCCCTTCCTTG
CTTTTTCTCTCTTGTAGTTCGTGTATTGGTTCTACTATCAAAGTAACCTCGAGGTCATGC
ATAGCTAGTCTTAGAGACAGTCAAAGATGACGACCTTAAATATAAAACCTAAACATGAAT
TGATTGTGCACCTGGCATGTGTGCTGATGTGCCACCATGTACCAACAGCTGGCGCATCCA
ATACAGGGGGTCTCCCATTTGGGGGATGGTATGGTGTGGACAATCTACCAGGGTTCTCAA
AATTTCACCAACTCTGGCACTTTTTGGAGTATTCAGGAAGGCTCAGAGGCTCCACCTAAC
ATACAAGCTTCTCAAGCTTGGTTTTCTTTATGATTGGAAGAGGGGTTCTGGGAAATGCTC
CCGATTGAAGGTTGTTAATTTGTCCTTGGATTGTCGTTGGCTTCTAACCATTCTTACATA
TCATGGTGGTAATATGCACCCCGTGTGTGGGTGTACTTAGATTTTTGTCTTCTCTCTCTG
CATTCAGTTTTAGCTTCATTTACCTTGCTCCAAAGAGTACCTGCAGGTAATATCT
■■Homology search results ■■ -
sp_hit_id Q83885
Definition sp|Q83885|VP2_NVN68 Protein VP2 OS=Norwalk virus (strain GI/Human/United States of America/Norwalk/1968)
Align length 81
Score (bit) 33.9
E-value 0.14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913907|Adiantum capillus-veneris mRNA, clone:
YMU001_000037_F10.
         (595 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q83885|VP2_NVN68 Protein VP2 OS=Norwalk virus (strain GI/Huma...    34   0.14 
sp|Q5R996|BT3A3_PONAB Butyrophilin subfamily 3 member A3 OS=Pong...    35   0.29 
sp|Q04550|VP2_SOUV3 Protein VP2 OS=Southampton virus (strain GI/...    34   0.64 
sp|Q9YH95|PAX5_XENLA Paired box protein Pax-5 OS=Xenopus laevis ...    32   2.4  
sp|Q94177|ADRL_CAEEL ADIPOR-like receptor C43G2.1 OS=Caenorhabdi...    31   4.1  
sp|Q02962|PAX2_HUMAN Paired box protein Pax-2 OS=Homo sapiens GN...    31   4.1  
sp|Q136Q9|CTAA_RHOPS Heme A synthase OS=Rhodopseudomonas palustr...    31   4.1  
sp|O00478|BT3A3_HUMAN Butyrophilin subfamily 3 member A3 OS=Homo...    31   4.1  
sp|Q9ULL4|PLXB3_HUMAN Plexin-B3 OS=Homo sapiens GN=PLXNB3 PE=1 SV=2    31   5.4  
sp|Q02650|PAX5_MOUSE Paired box protein Pax-5 OS=Mus musculus GN...    31   5.4  
sp|Q02548|PAX5_HUMAN Paired box protein Pax-5 OS=Homo sapiens GN...    31   5.4  
sp|A4WF97|RSMB_ENT38 Ribosomal RNA small subunit methyltransfera...    30   7.1  
sp|P32114|PAX2_MOUSE Paired box protein Pax-2 OS=Mus musculus GN...    30   9.2  
sp|Q5E7F8|GSH1_VIBF1 Glutamate--cysteine ligase OS=Vibrio fische...    30   9.2  

>sp|Q83885|VP2_NVN68 Protein VP2 OS=Norwalk virus (strain
           GI/Human/United States of America/Norwalk/1968) GN=ORF3
           PE=3 SV=1
          Length = 212

 Score = 33.9 bits (76), Expect(2) = 0.14
 Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 2/81 (2%)
 Frame = -1

Query: 502 GVHITTMICKNG*KPTTIQGQINNLQSGAFPRTPLPIIKKTKLEKLVC*VEPLSLPEYSK 323
           G  +T ++  NG + +  +     L+SG F   P+P   K K  +      P   P    
Sbjct: 91  GAPVTRIVDWNGVRVSAPESSATTLRSGGFMSVPIPFASKQKQVQSSGISNPNYSPSSIS 150

Query: 322 KCQSW*NFENPGRLS--TPYH 266
           +  SW   +N  R    +PYH
Sbjct: 151 RTTSWVESQNSSRFGNLSPYH 171



 Score = 20.8 bits (42), Expect(2) = 0.14
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 165 LYLRSSSLTVSKTSYA*PRGYFDS 94
           ++L     T S T  + PRGYF++
Sbjct: 178 VWLTPPGSTASSTLSSVPRGYFNT 201


>sp|Q5R996|BT3A3_PONAB Butyrophilin subfamily 3 member A3 OS=Pongo
           abelii GN=BTN3A3 PE=2 SV=1
          Length = 585

 Score = 35.0 bits (79), Expect = 0.29
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
 Frame = +1

Query: 292 GSQNFTNSGTFWSIQEGSE-------APPNIQASQAWFSL*LEEGFWEMLPIEG 432
           G +NFT+   +W ++ G            N++  + W  +  E G+W M P +G
Sbjct: 386 GCENFTSGRHYWEVEVGDRKEWHIGVCSKNVERKKGWVKMTPENGYWTMGPTDG 439


>sp|Q04550|VP2_SOUV3 Protein VP2 OS=Southampton virus (strain
           GI/Human/United Kingdom/Southampton/1991) GN=ORF3 PE=3
           SV=1
          Length = 211

 Score = 33.9 bits (76), Expect = 0.64
 Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
 Frame = -1

Query: 502 GVHITTMICKNG*KPTTIQGQINNLQSGAFPRTPLPIIKKTKLEKLVC*VEP-LSLPEYS 326
           G  +T +I  NG +    +     L+SG F   P+P+  K+K  +      P   +   S
Sbjct: 91  GAPVTRLIDWNGTRVAAPRSSATTLRSGGFMAVPMPVQPKSKTPQSSGFSNPAYDMSTVS 150

Query: 325 KKCQSW*NFENPGRLSTPYH 266
            +  SW   +N  R  +P+H
Sbjct: 151 SRTSSWVQSQNSLRSVSPFH 170


>sp|Q9YH95|PAX5_XENLA Paired box protein Pax-5 OS=Xenopus laevis
           GN=pax5 PE=2 SV=1
          Length = 388

 Score = 32.0 bits (71), Expect = 2.4
 Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
 Frame = -1

Query: 349 PLSLPEYSKKCQSW*NFENPGRLSTPYH---PPNGRPPVLDA 233
           P S P+YS    SW  F NPG L +PY+      G PP   A
Sbjct: 343 PYSHPQYSSYNDSW-RFPNPGLLGSPYYYSAARGGAPPATAA 383


>sp|Q94177|ADRL_CAEEL ADIPOR-like receptor C43G2.1 OS=Caenorhabditis
           elegans GN=C43G2.1 PE=2 SV=2
          Length = 434

 Score = 31.2 bits (69), Expect = 4.1
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
 Frame = -3

Query: 281 VHTIPSPKWETPCIGCAS-----CWYMVAHQHTCQVHNQFMFRFYI*GRHL*LSLRLAMH 117
           +HT     W T  IGC +     CW++    +  Q   + +F F+  G  L L L  A H
Sbjct: 197 LHTETGNIW-THLIGCVAFFFLACWFLTRPDNHIQFQEKVVFSFFFAGAVLCLGLSFAFH 255

Query: 116 DL 111
            L
Sbjct: 256 TL 257


>sp|Q02962|PAX2_HUMAN Paired box protein Pax-2 OS=Homo sapiens
           GN=PAX2 PE=1 SV=4
          Length = 417

 Score = 31.2 bits (69), Expect = 4.1
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = -1

Query: 349 PLSLPEYSKKCQSW*NFENPGRLSTPYH---PPNGRPPVLDAPA 227
           P S P+Y+   ++W  F NP  LS+PY+    P G  P   A A
Sbjct: 371 PYSHPQYTAYNEAW-RFSNPALLSSPYYYSAAPRGSAPAAAAAA 413


>sp|Q136Q9|CTAA_RHOPS Heme A synthase OS=Rhodopseudomonas palustris
           (strain BisB5) GN=ctaA PE=3 SV=1
          Length = 362

 Score = 31.2 bits (69), Expect = 4.1
 Identities = 28/104 (26%), Positives = 46/104 (44%), Gaps = 16/104 (15%)
 Frame = +1

Query: 325 WSIQEGSEAPPNIQASQAWFSL*LEEGFWEMLPIEGC*FVLGLSLASNHSYISWW*YAPR 504
           W + +G+  P   +AS+ WF    E+ +W+ L      F   L++  +H  +++  +A  
Sbjct: 229 WPLIDGALIP---EASRLWF----EQPWWKNL------FDNHLTVQFDHRMMAYALWALA 275

Query: 505 VWVYLD----------------FCLLSLHSVLASFTLLQRVPAG 588
            W  +D                F  LSL +VL   TLL +VP G
Sbjct: 276 AWHAIDALRARAGGAAGGALWLFAALSLQAVLGILTLLYQVPIG 319


>sp|O00478|BT3A3_HUMAN Butyrophilin subfamily 3 member A3 OS=Homo
           sapiens GN=BTN3A3 PE=1 SV=1
          Length = 584

 Score = 31.2 bits (69), Expect = 4.1
 Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 7/49 (14%)
 Frame = +1

Query: 292 GSQNFTNSGTFWSIQEGSE-------APPNIQASQAWFSL*LEEGFWEM 417
           G +NFT+   +W ++ G            N++  + W  +  E G+W M
Sbjct: 386 GCENFTSGRHYWEVEVGDRKEWHIGVCSKNVERKKGWVKMTPENGYWTM 434


>sp|Q9ULL4|PLXB3_HUMAN Plexin-B3 OS=Homo sapiens GN=PLXNB3 PE=1 SV=2
          Length = 1909

 Score = 30.8 bits (68), Expect = 5.4
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = +2

Query: 338 KAQRLHLTYKLLKLGFLYDWKRGSGKCSRLKVVNLSLDCRW 460
           +AQRL  T+ L  +  LYD   G   CS  +  N SL C W
Sbjct: 771 EAQRLDNTHALYVI--LYDCAMGHPDCSHCQAANRSLGCLW 809


>sp|Q02650|PAX5_MOUSE Paired box protein Pax-5 OS=Mus musculus
           GN=Pax5 PE=1 SV=1
          Length = 391

 Score = 30.8 bits (68), Expect = 5.4
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -1

Query: 349 PLSLPEYSKKCQSW*NFENPGRLSTPYH 266
           P S P+YS    SW  F NPG L +PY+
Sbjct: 345 PYSHPQYSSYNDSW-RFPNPGLLGSPYY 371
tr_hit_id B2AN64
Definition tr|B2AN64|B2AN64_PODAN Predicted CDS Pa_6_9110 OS=Podospora anserina
Align length 66
Score (bit) 35.0
E-value 3.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913907|Adiantum capillus-veneris mRNA, clone:
YMU001_000037_F10.
         (595 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B2AN64|B2AN64_PODAN Predicted CDS Pa_6_9110 OS=Podospora anse...    35   3.3  
tr|B1VGG2|B1VGG2_CORU7 Putative uncharacterized protein OS=Coryn...    35   4.3  
tr|Q0SID9|Q0SID9_RHOSR Possible acyltransferase OS=Rhodococcus s...    34   5.6  
tr|Q8VA26|Q8VA26_9CALI Minor structural protein OS=Human caliciv...    33   9.5  
tr|B0JA23|B0JA23_RHILT Metallophosphoesterase OS=Rhizobium legum...    33   9.5  

>tr|B2AN64|B2AN64_PODAN Predicted CDS Pa_6_9110 OS=Podospora
           anserina PE=4 SV=1
          Length = 927

 Score = 35.0 bits (79), Expect = 3.3
 Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
 Frame = -1

Query: 373 EKLVC*VEPLSLPEYSKKCQSW*NFENP----GRLSTPYHPPNGRPPV---LDAPAVGTW 215
           +K V  V PLS+  YS K QSW  F+NP    G  ST    P  R      +  P +G  
Sbjct: 308 DKPVADVPPLSIWRYSIKSQSWDEFKNPKTTAGNYSTDADIPLERAAEGAGISVPELGLS 367

Query: 214 WHISTH 197
           W+   H
Sbjct: 368 WYFGGH 373


>tr|B1VGG2|B1VGG2_CORU7 Putative uncharacterized protein
           OS=Corynebacterium urealyticum (strain ATCC 43042 / DSM
           7109) GN=cu1309 PE=4 SV=1
          Length = 247

 Score = 34.7 bits (78), Expect = 4.3
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
 Frame = +1

Query: 226 QLAHPIQGVSHLGDGMVWTIYQGSQNFTNSGTFWS----IQEGSEAPPNIQAS 372
           +L   + G+  LGDG V   Y+ +Q  T S T  +    +QE S  PPN+ +S
Sbjct: 186 RLITAVTGIQRLGDGAVQVTYRTAQGATGSVTTRATGNGVQEESNLPPNVDSS 238


>tr|Q0SID9|Q0SID9_RHOSR Possible acyltransferase OS=Rhodococcus sp.
           (strain RHA1) GN=RHA1_ro00864 PE=4 SV=1
          Length = 728

 Score = 34.3 bits (77), Expect = 5.6
 Identities = 22/65 (33%), Positives = 36/65 (55%)
 Frame = +1

Query: 229 LAHPIQGVSHLGDGMVWTIYQGSQNFTNSGTFWSIQEGSEAPPNIQASQAWFSL*LEEGF 408
           L  P+Q  + LGDG+   +Y G+  F   GT +     ++APP+    Q ++SL +EE F
Sbjct: 116 LLPPLQARAVLGDGIAGALYVGNYRFALHGTDYL---AADAPPS--PFQHYWSLGVEEQF 170

Query: 409 WEMLP 423
           + + P
Sbjct: 171 YLLWP 175


>tr|Q8VA26|Q8VA26_9CALI Minor structural protein OS=Human
           calicivirus NLV/C59/99 PE=4 SV=1
          Length = 211

 Score = 33.5 bits (75), Expect = 9.5
 Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
 Frame = -1

Query: 502 GVHITTMICKNG*KPTTIQGQINNLQSGAFPRTPLPIIKKTKLEKLVC*VEP-LSLPEYS 326
           G  +T +I  NG +    +     L+SG F   P+P+  K+K  +      P   +   S
Sbjct: 91  GAPVTQLIDWNGTRVAAPRSSSTTLRSGGFMAVPMPVQPKSKAPQSSGFPNPAYDMSTVS 150

Query: 325 KKCQSW*NFENPGRLSTPYH 266
            +  SW   +N  R  +P+H
Sbjct: 151 SRTSSWVQSQNSLRSVSPFH 170


>tr|B0JA23|B0JA23_RHILT Metallophosphoesterase OS=Rhizobium
           leguminosarum bv. trifolii WSM1325 GN=RlegDRAFT_1598
           PE=4 SV=1
          Length = 250

 Score = 33.5 bits (75), Expect = 9.5
 Identities = 26/66 (39%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
 Frame = -2

Query: 312 VGEILRTLVDCPHHTIPQMGDPLYWMRQLLVHGGTSAHMPGAQSIHV*V--LYLRSSSLT 139
           V E LR+L DCP H +P  GD +  MR  LV  GT  +  G       V  L L    +T
Sbjct: 54  VAENLRSL-DCPVHLLPGNGDDVQLMRSELVAVGTWINATGPMHFRTAVDGLTLFGVDVT 112

Query: 138 VSKTSY 121
           V+  SY
Sbjct: 113 VAGQSY 118