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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913912
Clone id YMU001_000037_G03
Library
Length 591
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000037_G03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CCCTCGAGTTAATGATTGATTGATCCCCGCCAGTTTTTTTTTTAACAAAGCCACACTCAG
CAAGTAACTTGACCAACAGAAAACACATCCCAACCTCTCTGTTGCACACGCTCACAGAAA
ATACATCCCAATAAAACTGAAGCAGGTGATTCACTTCTTGTTCTGATTATCATGCTTTGT
GAATACTAGACTATCTTGAAACACGTCTTCATATACTAGACTATCTTGAAGCTCCTCGTT
TGGACTGCCTCATGTCAAATGCATAAAGCTCCAATAGCCAAACTTACACCCAGCAACTGA
GAAGCATCCTCTGTGCTTACAACTAGAATCTGAGAAGAAACCTCCCTGCAGGTAGGCTTA
TTGCTCGCCGATTTTTTGTACTAGTACGGTCTATACCTGTAATCAGAAGGACGCGACACT
CGATCAGCACCAGCAGCTCCATCGTAAGGGTTTCCAGGCTGCCCCCCAGCAAAAAAGCCA
AGCCTTGCACTAGCATATTCATAATTCCTCTGCAGCTCAGCAGCATTACCCCATGAACTC
GCATCTCCAACCCCGGACTGTGATGCAAAATTGCCGAGTACCTGCAGGTAA
■■Homology search results ■■ -
sp_hit_id P23645
Definition sp|P23645|BIB_DROME Neurogenic protein big brain OS=Drosophila melanogaster
Align length 77
Score (bit) 33.5
E-value 0.81
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913912|Adiantum capillus-veneris mRNA, clone:
YMU001_000037_G03.
         (591 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P23645|BIB_DROME Neurogenic protein big brain OS=Drosophila m...    33   0.81 
sp|A9WSA8|CARB_RENSM Carbamoyl-phosphate synthase large chain OS...    32   2.4  
sp|Q9SQV1|RH40_ARATH Probable DEAD-box ATP-dependent RNA helicas...    31   5.3  
sp|P36560|ASR_ECOLI Acid shock protein OS=Escherichia coli (stra...    30   6.9  
sp|B1IQZ3|ASR_ECOLC Acid shock protein OS=Escherichia coli (stra...    30   6.9  
sp|Q8CW15|ASR_ECOL6 Acid shock protein OS=Escherichia coli O6 GN...    30   6.9  
sp|Q0THN1|ASR_ECOL5 Acid shock protein OS=Escherichia coli O6:K1...    30   6.9  
sp|Q8X783|ASR_ECO57 Acid shock protein OS=Escherichia coli O157:...    30   6.9  
sp|A4VJ44|COBS_PSEU5 Cobalamin synthase OS=Pseudomonas stutzeri ...    30   9.0  

>sp|P23645|BIB_DROME Neurogenic protein big brain OS=Drosophila
           melanogaster GN=bib PE=1 SV=2
          Length = 696

 Score = 33.5 bits (75), Expect = 0.81
 Identities = 24/77 (31%), Positives = 33/77 (42%)
 Frame = +2

Query: 305 HPLCLQLESEKKPPCR*AYCSPIFCTSTVYTCNQKDATLDQHQQLHRKGFQAAPQQKSQA 484
           HP  ++ +SE+K         P  C  T YT +Q  A   Q QQ  ++  Q   QQ+ Q 
Sbjct: 620 HPQPIRTQSERKVSAPVVVSQPAACAVT-YTTSQGSAVTAQQQQQQQQQQQQQQQQQQQQ 678

Query: 485 LH*HIHNSSAAQQHYPM 535
           +          QQHY M
Sbjct: 679 M-----MMQQQQQHYGM 690


>sp|A9WSA8|CARB_RENSM Carbamoyl-phosphate synthase large chain
            OS=Renibacterium salmoninarum (strain ATCC 33209 / DSM
            20767 / IFO 15589) GN=carB PE=3 SV=1
          Length = 1106

 Score = 32.0 bits (71), Expect = 2.4
 Identities = 20/52 (38%), Positives = 27/52 (51%)
 Frame = -3

Query: 166  SEQEVNHLLQFYWDVFSVSVCNREVGMCFLLVKLLAECGFVKKKTGGDQSII 11
            S+   N+ L     VF VSV NR+     + VKLLA+ GF    TGG   ++
Sbjct: 951  SQAAANNALPTEGKVF-VSVANRDKRAVIMAVKLLADLGFEIVSTGGTADVL 1001


>sp|Q9SQV1|RH40_ARATH Probable DEAD-box ATP-dependent RNA helicase
           40 OS=Arabidopsis thaliana GN=RH40 PE=3 SV=1
          Length = 1088

 Score = 30.8 bits (68), Expect = 5.3
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +2

Query: 419 LDQH--QQLHRKGFQAAPQQKSQALH*HIHNSSAAQQHYPMNSHLQPRTVMQNCRVP 583
           + QH  QQ+ ++  Q  PQQ+SQ++  H H   + Q + P     Q     Q+ ++P
Sbjct: 113 MQQHPAQQMPQQSGQQFPQQQSQSMVPHPHGHPSVQTYQPTTQQQQQGMQNQHSQMP 169


>sp|P36560|ASR_ECOLI Acid shock protein OS=Escherichia coli (strain
           K12) GN=asr PE=1 SV=3
          Length = 102

 Score = 30.4 bits (67), Expect = 6.9
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 11/49 (22%)
 Frame = +2

Query: 440 HRKGFQAAPQQKSQALH*HIHN-----------SSAAQQHYPMNSHLQP 553
           H+K  +AAP QK+QA   H  N           + AA++H   +SH QP
Sbjct: 45  HKKQHKAAPAQKAQAAKKHHKNTKAEQKAPEQKAQAAKKHAKKHSHQQP 93


>sp|B1IQZ3|ASR_ECOLC Acid shock protein OS=Escherichia coli (strain
           ATCC 8739 / DSM 1576 / Crooks) GN=asr PE=3 SV=1
          Length = 102

 Score = 30.4 bits (67), Expect = 6.9
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 11/49 (22%)
 Frame = +2

Query: 440 HRKGFQAAPQQKSQALH*HIHN-----------SSAAQQHYPMNSHLQP 553
           H+K  +AAP QK+QA   H  N           + AA++H   +SH QP
Sbjct: 45  HKKQHKAAPAQKAQAAKKHHKNTKAEQKAPEQKAQAAKKHAKKHSHQQP 93


>sp|Q8CW15|ASR_ECOL6 Acid shock protein OS=Escherichia coli O6
           GN=asr PE=3 SV=2
          Length = 102

 Score = 30.4 bits (67), Expect = 6.9
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 11/49 (22%)
 Frame = +2

Query: 440 HRKGFQAAPQQKSQALH*HIHN-----------SSAAQQHYPMNSHLQP 553
           H+K  +AAP QK+QA   H  N           + AA++H   +SH QP
Sbjct: 45  HKKQHKAAPAQKAQAAKKHHKNAKAEQKAPEQKAQAAKKHAKKHSHQQP 93


>sp|Q0THN1|ASR_ECOL5 Acid shock protein OS=Escherichia coli
           O6:K15:H31 (strain 536 / UPEC) GN=asr PE=3 SV=1
          Length = 102

 Score = 30.4 bits (67), Expect = 6.9
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 11/49 (22%)
 Frame = +2

Query: 440 HRKGFQAAPQQKSQALH*HIHN-----------SSAAQQHYPMNSHLQP 553
           H+K  +AAP QK+QA   H  N           + AA++H   +SH QP
Sbjct: 45  HKKQHKAAPAQKAQAAKKHHKNAKAEQKAPEQKAQAAKKHAKKHSHQQP 93


>sp|Q8X783|ASR_ECO57 Acid shock protein OS=Escherichia coli O157:H7
           GN=asr PE=3 SV=1
          Length = 102

 Score = 30.4 bits (67), Expect = 6.9
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 11/49 (22%)
 Frame = +2

Query: 440 HRKGFQAAPQQKSQALH*HIHN-----------SSAAQQHYPMNSHLQP 553
           H+K  +AAP QK+QA   H  N           + AA++H   +SH QP
Sbjct: 45  HKKQHKAAPAQKAQAAKKHHKNTKAEQKAPEQKAQAAKKHAKKHSHQQP 93


>sp|A4VJ44|COBS_PSEU5 Cobalamin synthase OS=Pseudomonas stutzeri
           (strain A1501) GN=cobS PE=3 SV=1
          Length = 245

 Score = 30.0 bits (66), Expect = 9.0
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 9/58 (15%)
 Frame = -3

Query: 550 LEMRVHGVMLLSCRGIMNMLVQGLAFLL---------GGSLETLTMELLVLIECRVLL 404
           L + V G +LL   G++ + + G+ FLL         GG+       LL L+EC VL+
Sbjct: 180 LALVVIGCLLLGATGLLALTLAGVTFLLARRAMLRRLGGTTGDTAGALLELVECAVLV 237
tr_hit_id Q55E08
Definition tr|Q55E08|Q55E08_DICDI Putative uncharacterized protein OS=Dictyostelium discoideum
Align length 67
Score (bit) 35.8
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913912|Adiantum capillus-veneris mRNA, clone:
YMU001_000037_G03.
         (591 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q55E08|Q55E08_DICDI Putative uncharacterized protein OS=Dicty...    36   1.9  
tr|B4LWE4|B4LWE4_DROVI GJ23541 OS=Drosophila virilis GN=GJ23541 ...    35   4.1  
tr|B4JHD0|B4JHD0_DROGR GH18073 OS=Drosophila grimshawi GN=GH1807...    35   4.1  
tr|B3N909|B3N909_DROER GG10075 OS=Drosophila erecta GN=GG10075 P...    35   4.1  
tr|Q9TZE7|Q9TZE7_CAEEL Putative uncharacterized protein OS=Caeno...    35   4.2  
tr|Q82IW4|Q82IW4_STRAW Putative beta-N-acetylhexosaminidase OS=S...    34   7.1  
tr|B2AQ62|B2AQ62_PODAN Predicted CDS Pa_4_5210 OS=Podospora anse...    34   7.1  
tr|B6U754|B6U754_MAIZE Putative uncharacterized protein OS=Zea m...    33   9.2  
tr|B3NWS9|B3NWS9_DROER GG18194 OS=Drosophila erecta GN=GG18194 P...    33   9.2  

>tr|Q55E08|Q55E08_DICDI Putative uncharacterized protein
           OS=Dictyostelium discoideum GN=DDB_0190267 PE=4 SV=1
          Length = 721

 Score = 35.8 bits (81), Expect = 1.9
 Identities = 21/67 (31%), Positives = 27/67 (40%)
 Frame = +2

Query: 368 PIFCTSTVYTCNQKDATLDQHQQLHRKGFQAAPQQKSQALH*HIHNSSAAQQHYPMNSHL 547
           PI   +  Y+ N K+    QHQQ H++  Q   QQ  Q      H     QQH+    H 
Sbjct: 584 PITANNLAYSINSKNPPQQQHQQ-HQQQQQQQQQQHQQHHQQQYHQQQQYQQHHQQQQHH 642

Query: 548 QPRTVMQ 568
           Q     Q
Sbjct: 643 QQHQQQQ 649


>tr|B4LWE4|B4LWE4_DROVI GJ23541 OS=Drosophila virilis GN=GJ23541
           PE=4 SV=1
          Length = 627

 Score = 34.7 bits (78), Expect = 4.1
 Identities = 30/121 (24%), Positives = 46/121 (38%), Gaps = 29/121 (23%)
 Frame = +2

Query: 278 PNLHPATEKHPLCLQL----------ESEKKPPCR*A-------YCSPIFCTSTVYTCNQ 406
           P+ HP T  HP C +           +S+++     A       YC+ +      +  N 
Sbjct: 245 PHPHPHTHPHPYCYRFPPSPPAGILKKSDEETAAAAAAAAAAAVYCNDVSVGQHFHQHNT 304

Query: 407 K---------DATLDQHQQLHRKGFQAAPQQKSQ---ALH*HIHNSSAAQQHYPMNSHLQ 550
           K          A   QHQQ  ++  Q   QQ+ Q   +LH H  +  A   H   ++HL 
Sbjct: 305 KIEHADSTTTAAAAQQHQQQQQQQQQQQQQQQQQHHDSLHSHTQHQQAQNTHQQTHAHLT 364

Query: 551 P 553
           P
Sbjct: 365 P 365


>tr|B4JHD0|B4JHD0_DROGR GH18073 OS=Drosophila grimshawi GN=GH18073
           PE=4 SV=1
          Length = 530

 Score = 34.7 bits (78), Expect = 4.1
 Identities = 21/59 (35%), Positives = 30/59 (50%)
 Frame = +2

Query: 404 QKDATLDQHQQLHRKGFQAAPQQKSQALH*HIHNSSAAQQHYPMNSHLQPRTVMQNCRV 580
           Q+     Q QQ H++  Q+A  Q  Q LH H H+     Q  P++ HLQ  TV+ +  V
Sbjct: 47  QQQQQQQQQQQQHQQLQQSA--QHLQQLHHHPHHHHHLPQTQPLHHHLQQHTVVSSASV 103


>tr|B3N909|B3N909_DROER GG10075 OS=Drosophila erecta GN=GG10075 PE=4
           SV=1
          Length = 694

 Score = 34.7 bits (78), Expect = 4.1
 Identities = 23/77 (29%), Positives = 31/77 (40%)
 Frame = +2

Query: 305 HPLCLQLESEKKPPCR*AYCSPIFCTSTVYTCNQKDATLDQHQQLHRKGFQAAPQQKSQA 484
           HP  ++ +SE+K         P  C  T  T      T  Q QQ H++  Q   QQ+ Q 
Sbjct: 615 HPQPIRTQSERKVSAPVVVSQPAACAVTYTTSQGSAVTAQQQQQQHQQQQQQQQQQQQQQ 674

Query: 485 LH*HIHNSSAAQQHYPM 535
               +      QQHY M
Sbjct: 675 QQMMMQQQ---QQHYGM 688


>tr|Q9TZE7|Q9TZE7_CAEEL Putative uncharacterized protein
           OS=Caenorhabditis elegans GN=T10D4.11 PE=2 SV=1
          Length = 250

 Score = 34.7 bits (78), Expect = 4.2
 Identities = 20/62 (32%), Positives = 31/62 (50%)
 Frame = -1

Query: 309 GCFSVAGCKFGYWSFMHLT*GSPNEELQDSLVYEDVFQDSLVFTKHDNQNKK*ITCFSFI 130
           GC     C  GYW+++ L     + EL D     D+++D+ V  KH N   + IT FS +
Sbjct: 51  GCSRTVYCTVGYWTWLTL-----SWELSDIPTPSDIYEDTFVSYKHFNTPSRLIT-FSLL 104

Query: 129 GM 124
            +
Sbjct: 105 SL 106


>tr|Q82IW4|Q82IW4_STRAW Putative beta-N-acetylhexosaminidase
           OS=Streptomyces avermitilis GN=nagZ1 PE=4 SV=1
          Length = 534

 Score = 33.9 bits (76), Expect = 7.1
 Identities = 20/42 (47%), Positives = 22/42 (52%)
 Frame = -2

Query: 551 VGDASSWGNAAELQRNYEYASARLGFFAGGQPGNPYDGAAGA 426
           VGD + WG AAEL R         G FAGG+ GN  D A  A
Sbjct: 421 VGDETPWGVAAELAR--LLPGTETGSFAGGEGGNGEDTAPAA 460


>tr|B2AQ62|B2AQ62_PODAN Predicted CDS Pa_4_5210 OS=Podospora anserina
            PE=4 SV=1
          Length = 1015

 Score = 33.9 bits (76), Expect = 7.1
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = +2

Query: 419  LDQHQQLHRKGFQAAPQQKSQALH*HIHNSSAAQQHYPMNSHLQPRTVMQNCRVP 583
            L QHQQ  ++ F   PQQ+ Q  + H+      QQH     H Q +   ++   P
Sbjct: 895  LQQHQQHQQQHFHPPPQQQRQPPYSHLQQVQPPQQHQQHQQHQQQQGAQRSPTQP 949


>tr|B6U754|B6U754_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 483

 Score = 33.5 bits (75), Expect = 9.2
 Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
 Frame = -3

Query: 568 LHHSPGLEMRVHGVMLLSCRGIMNMLVQGLAFLLGGSLETL------TMELLVLIECRVL 407
           L ++  L  +V G ML SCR ++++ ++G   L GGSL +L      ++E+L +  C  +
Sbjct: 374 LSYNETLNDKVIGAMLSSCRNLIDIRLRGCRGLTGGSLLSLLRHCGQSLEILDISRCPGI 433

Query: 406 LITGID 389
            I  ++
Sbjct: 434 AIGNVE 439


>tr|B3NWS9|B3NWS9_DROER GG18194 OS=Drosophila erecta GN=GG18194 PE=4
           SV=1
          Length = 211

 Score = 33.5 bits (75), Expect = 9.2
 Identities = 18/43 (41%), Positives = 20/43 (46%)
 Frame = -2

Query: 554 GVGDASSWGNAAELQRNYEYASARLGFFAGGQPGNPYDGAAGA 426
           G G  S+WGN AE      +AS        G  G  Y GAAGA
Sbjct: 153 GAGAGSAWGNPAEFDYTVNHASG-----GAGGAGGAYGGAAGA 190