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NBDC - LSDB Archive
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BP913915
Clone id YMU001_000037_G06
Library
Length 538
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000037_G06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AGCTTGCAATCAGCATATCATCCACATACAAAACCAAGATAATCAGACTGTCCTCTGTTG
CCCTCTTGGTGTACAAGCAGTGATCAATCTAACTTCGGCTCACCCTTTGAGATTGCATGA
ATGTATCAAATTTTCGATACCATTCTTGAGGTGCCTGTTTCAACCCATACAAACTCCTTT
TGAGTTTACATACCATCTTTTCCTTCCCTTTTGCGACAAAACCGTCAAGCTACTACATAT
AGATTTCCTCATGCAAATCACCATGTAAAAATGCGGTTTTTACATCCATCTGTATGAGTT
CCCAATCCCCTGATGCAACCAAGCCCAAAACAATCCGCAAAGTAGTCATCTTGACTACGG
GAGAAAAGATCACATCAAAATCAATTCCGTGTTCTTGCTTGTACCCTTTGACAACCAATC
GTGCCTTGGCAAATGCACCAAATCCCAAGTATCATTCTTCTCCAGAGATTCCATTTCCAA
CAGCATGGCCCTATACCATTTCTCGCTGTGAGAACTAGTCGATGCTTCCTTCACGCAA
■■Homology search results ■■ -
sp_hit_id P10978
Definition sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum
Align length 140
Score (bit) 182.0
E-value 2.0e-49
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913915|Adiantum capillus-veneris mRNA, clone:
YMU001_000037_G06.
         (538 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from tra...   182   2e-49
sp|P04146|COPIA_DROME Copia protein OS=Drosophila melanogaster G...   107   4e-23
sp|P25600|YCH4_YEAST Putative transposon Ty5-1 protein YCL074W O...    61   4e-09
sp|P47024|YJ41B_YEAST Transposon Ty4-J Gag-Pol polyprotein OS=Sa...    60   9e-09
sp|P0C2J7|YH41B_YEAST Transposon Ty4-H Gag-Pol polyprotein OS=Sa...    60   9e-09
sp|Q12088|YL11B_YEAST Transposon Ty1-LR1 Gag-Pol polyprotein OS=...    58   1e-08
sp|P0C2J0|YP13B_YEAST Transposon Ty1-PR2 Gag-Pol polyprotein OS=...    57   2e-08
sp|Q04711|YM11B_YEAST Transposon Ty1-ML1 Gag-Pol polyprotein OS=...    57   2e-08
sp|Q12316|YG13B_YEAST Transposon Ty1-GR3 Gag-Pol polyprotein OS=...    57   2e-08
sp|Q12269|YG12B_YEAST Transposon Ty1-GR2 Gag-Pol polyprotein OS=...    57   2e-08
sp|P0C2I2|YD14B_YEAST Transposon Ty1-DR5 Gag-Pol polyprotein OS=...    57   2e-08
sp|Q99231|YD12B_YEAST Transposon Ty1-DR3 Gag-Pol polyprotein OS=...    57   2e-08
sp|Q03855|YD11B_YEAST Transposon Ty1-DR1 Gag-Pol polyprotein OS=...    57   2e-08
sp|O13527|YA11B_YEAST Transposon Ty1-A Gag-Pol polyprotein OS=Sa...    57   2e-08
sp|Q04214|YM13B_YEAST Transposon Ty1-MR1 Gag-Pol polyprotein OS=...    58   3e-08
sp|Q04670|YM14B_YEAST Transposon Ty1-MR2 Gag-Pol polyprotein OS=...    57   4e-08
sp|Q03619|YE12B_YEAST Transposon Ty1-ER2 Gag-Pol polyprotein OS=...    57   4e-08
sp|Q12490|YB11B_YEAST Transposon Ty1-BL Gag-Pol polyprotein OS=S...    57   4e-08
sp|Q12414|YP11B_YEAST Transposon Ty1-PL Gag-Pol polyprotein OS=S...    57   6e-08
sp|Q92393|YO12B_YEAST Transposon Ty1-OR Gag-Pol polyprotein OS=S...    57   6e-08
sp|Q12273|YO11B_YEAST Transposon Ty1-OL Gag-Pol polyprotein OS=S...    57   6e-08
sp|Q99337|YN12B_YEAST Transposon Ty1-NL2 Gag-Pol polyprotein OS=...    57   6e-08
sp|Q03434|YM12B_YEAST Transposon Ty1-ML2 Gag-Pol polyprotein OS=...    57   6e-08
sp|P0C2I5|YL12B_YEAST Transposon Ty1-LR2 Gag-Pol polyprotein OS=...    57   6e-08
sp|Q03612|YE11B_YEAST Transposon Ty1-ER1 Gag-Pol polyprotein OS=...    57   6e-08
sp|Q12193|YB12B_YEAST Transposon Ty1-BR Gag-Pol polyprotein OS=S...    57   6e-08
sp|Q12112|YN11B_YEAST Transposon Ty1-NL1 Gag-Pol polyprotein OS=...    57   7e-08
sp|P0C2I7|YL14B_YEAST Transposon Ty1-LR4 Gag-Pol polyprotein OS=...    57   7e-08
sp|P47100|YJ12B_YEAST Transposon Ty1-JR2 Gag-Pol polyprotein OS=...    57   7e-08
sp|O13535|YH11B_YEAST Transposon Ty1-H Gag-Pol polyprotein OS=Sa...    57   7e-08

>sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from
            transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
          Length = 1328

 Score =  182 bits (462), Expect(2) = 2e-49
 Identities = 91/140 (65%), Positives = 113/140 (80%)
 Frame = -1

Query: 427  KARLVVKGYKQEHGIDFDVIFSPVVKMTTLRIVLGLVASGDWELIQMDVKTAFLHGDLHE 248
            KARLVVKG++Q+ GIDFD IFSPVVKMT++R +L L AS D E+ Q+DVKTAFLHGDL E
Sbjct: 875  KARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEE 934

Query: 247  EIYM**LDGFVAKGKEKMVCKLKRSLYGLKQAPQEWYRKFDTFMQSQRVSRS*IDHCLYT 68
            EIYM   +GF   GK+ MVCKL +SLYGLKQAP++WY KFD+FM+SQ   ++  D C+Y 
Sbjct: 935  EIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYF 994

Query: 67   KRATEDSLIILVLYVDDMLI 8
            KR +E++ IIL+LYVDDMLI
Sbjct: 995  KRFSENNFIILLLYVDDMLI 1014



 Score = 33.1 bits (74), Expect(2) = 2e-49
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = -2

Query: 534 VKEASTSSHSEKWYRAMLLEMESLEKNDTWDLVHLPR 424
           +KE  +     +  +AM  EMESL+KN T+ LV LP+
Sbjct: 814 LKEVLSHPEKNQLMKAMQEEMESLQKNGTYKLVELPK 850


>sp|P04146|COPIA_DROME Copia protein OS=Drosophila melanogaster GN=GIP
            PE=1 SV=3
          Length = 1409

 Score =  107 bits (266), Expect(2) = 4e-23
 Identities = 57/143 (39%), Positives = 90/143 (62%), Gaps = 1/143 (0%)
 Frame = -1

Query: 427  KARLVVKGYKQEHGIDFDVIFSPVVKMTTLRIVLGLVASGDWELIQMDVKTAFLHGDLHE 248
            KARLV +G+ Q++ ID++  F+PV ++++ R +L LV   + ++ QMDVKTAFL+G L E
Sbjct: 955  KARLVARGFTQKYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKE 1014

Query: 247  EIYM**LDGFVAKGKEKMVCKLKRSLYGLKQAPQEWYRKFDTFMQSQRVSRS*IDHCLY- 71
            EIYM    G         VCKL +++YGLKQA + W+  F+  ++      S +D C+Y 
Sbjct: 1015 EIYMRLPQGISCNSDN--VCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVDRCIYI 1072

Query: 70   TKRATEDSLIILVLYVDDMLIAS 2
              +   +  I ++LYVDD++IA+
Sbjct: 1073 LDKGNINENIYVLLYVDDVVIAT 1095



 Score = 20.8 bits (42), Expect(2) = 4e-23
 Identities = 7/26 (26%), Positives = 14/26 (53%)
 Frame = -2

Query: 498 WYRAMLLEMESLEKNDTWDLVHLPRH 421
           W  A+  E+ + + N+TW +   P +
Sbjct: 906 WEEAINTELNAHKINNTWTITKRPEN 931


>sp|P25600|YCH4_YEAST Putative transposon Ty5-1 protein YCL074W
           OS=Saccharomyces cerevisiae GN=TY5A PE=4 SV=2
          Length = 308

 Score = 60.8 bits (146), Expect = 4e-09
 Identities = 37/96 (38%), Positives = 53/96 (55%)
 Frame = -1

Query: 289 MDVKTAFLHGDLHEEIYM**LDGFVAKGKEKMVCKLKRSLYGLKQAPQEWYRKFDTFMQS 110
           MDV TAFL+  + E IY+    GFV +     V +L   +YGLKQAP  W    +  ++ 
Sbjct: 1   MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60

Query: 109 QRVSRS*IDHCLYTKRATEDSLIILVLYVDDMLIAS 2
               R   +H LY  R+T D  I + +YVDD+L+A+
Sbjct: 61  IGFCRHEGEHGLYF-RSTSDGPIYIAVYVDDLLVAA 95


>sp|P47024|YJ41B_YEAST Transposon Ty4-J Gag-Pol polyprotein
            OS=Saccharomyces cerevisiae GN=TY4B-J PE=2 SV=2
          Length = 1803

 Score = 59.7 bits (143), Expect = 9e-09
 Identities = 42/142 (29%), Positives = 72/142 (50%)
 Frame = -1

Query: 427  KARLVVKGYKQEHGIDFDVIFSPVVKMTTLRIVLGLVASGDWELIQMDVKTAFLHGDLHE 248
            KAR+V +G  Q     + VI +  +    ++I L +  + +  +  +D+  AFL+  L E
Sbjct: 1338 KARIVCRGDTQSPDT-YSVITTESLNHNHIKIFLMIANNRNMFMKTLDINHAFLYAKLEE 1396

Query: 247  EIYM**LDGFVAKGKEKMVCKLKRSLYGLKQAPQEWYRKFDTFMQSQRVSRS*IDHCLYT 68
            EIY+            + V KL ++LYGLKQ+P+EW      ++    +  +     LY 
Sbjct: 1397 EIYI------PHPHDRRCVVKLNKALYGLKQSPKEWNDHLRQYLNGIGLKDNSYTPGLY- 1449

Query: 67   KRATEDSLIILVLYVDDMLIAS 2
               TED  +++ +YVDD +IA+
Sbjct: 1450 --QTEDKNLMIAVYVDDCVIAA 1469


>sp|P0C2J7|YH41B_YEAST Transposon Ty4-H Gag-Pol polyprotein
            OS=Saccharomyces cerevisiae GN=TY4B-H PE=2 SV=1
          Length = 1802

 Score = 59.7 bits (143), Expect = 9e-09
 Identities = 42/142 (29%), Positives = 72/142 (50%)
 Frame = -1

Query: 427  KARLVVKGYKQEHGIDFDVIFSPVVKMTTLRIVLGLVASGDWELIQMDVKTAFLHGDLHE 248
            KAR+V +G  Q     + VI +  +    ++I L +  + +  +  +D+  AFL+  L E
Sbjct: 1337 KARIVCRGDTQSPDT-YSVITTESLNHNHIKIFLMIANNRNMFMKTLDINHAFLYAKLEE 1395

Query: 247  EIYM**LDGFVAKGKEKMVCKLKRSLYGLKQAPQEWYRKFDTFMQSQRVSRS*IDHCLYT 68
            EIY+            + V KL ++LYGLKQ+P+EW      ++    +  +     LY 
Sbjct: 1396 EIYI------PHPHDRRCVVKLNKALYGLKQSPKEWNDHLRQYLNGIGLKDNSYTPGLY- 1448

Query: 67   KRATEDSLIILVLYVDDMLIAS 2
               TED  +++ +YVDD +IA+
Sbjct: 1449 --QTEDKNLMIAVYVDDCVIAA 1468


>sp|Q12088|YL11B_YEAST Transposon Ty1-LR1 Gag-Pol polyprotein
            OS=Saccharomyces cerevisiae GN=TY1B-LR1 PE=1 SV=1
          Length = 1755

 Score = 58.2 bits (139), Expect(2) = 1e-08
 Identities = 39/146 (26%), Positives = 71/146 (48%)
 Frame = -1

Query: 439  GAFAKARLVVKGYKQEHGIDFDVIFSPVVKMTTLRIVLGLVASGDWELIQMDVKTAFLHG 260
            G   KAR V +G  Q        + S  V    L   L L +  ++ + Q+D+ +A+L+ 
Sbjct: 1295 GGTHKARFVARGDIQHPDTYDPGMQSNTVHHYALMTSLSLASDNNYYITQLDISSAYLYA 1354

Query: 259  DLHEEIYM**LDGFVAKGKEKMVCKLKRSLYGLKQAPQEWYRKFDTFMQSQRVSRS*IDH 80
            D+ EE+Y   +      G    + +LK+SLYGLKQ+   WY    +++    + +  ++ 
Sbjct: 1355 DIKEELY---IRPPPHLGMNDKLIRLKKSLYGLKQSGANWYETIKSYL----IKQCGMEE 1407

Query: 79   CLYTKRATEDSLIILVLYVDDMLIAS 2
                    ++S + + L+VDDM++ S
Sbjct: 1408 VRGWSCVFKNSQVTICLFVDDMILFS 1433



 Score = 20.4 bits (41), Expect(2) = 1e-08
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 504  EKWYRAMLLEMESLEKNDTWD 442
            EK+ +A   E+  L K  TWD
Sbjct: 1248 EKYIQAYHKEVNQLLKMKTWD 1268


>sp|P0C2J0|YP13B_YEAST Transposon Ty1-PR2 Gag-Pol polyprotein
            OS=Saccharomyces cerevisiae GN=TY1B-PR2 PE=1 SV=1
          Length = 1756

 Score = 57.0 bits (136), Expect(2) = 2e-08
 Identities = 38/142 (26%), Positives = 69/142 (48%)
 Frame = -1

Query: 427  KARLVVKGYKQEHGIDFDVIFSPVVKMTTLRIVLGLVASGDWELIQMDVKTAFLHGDLHE 248
            KAR V +G  Q        + S  V    L   L L    ++ + Q+D+ +A+L+ D+ E
Sbjct: 1300 KARFVARGDIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKE 1359

Query: 247  EIYM**LDGFVAKGKEKMVCKLKRSLYGLKQAPQEWYRKFDTFMQSQRVSRS*IDHCLYT 68
            E+Y   +      G    + +LK+SLYGLKQ+   WY    +++    + +  ++     
Sbjct: 1360 ELY---IRPPPHLGMNDKLIRLKKSLYGLKQSGANWYETIKSYL----IKQCGMEEVRGW 1412

Query: 67   KRATEDSLIILVLYVDDMLIAS 2
                ++S + + L+VDDM++ S
Sbjct: 1413 SCVFKNSQVTICLFVDDMILFS 1434



 Score = 20.8 bits (42), Expect(2) = 2e-08
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 504  EKWYRAMLLEMESLEKNDTWD 442
            EK+  A   E+  L K +TWD
Sbjct: 1249 EKYIEAYHKEVNQLLKMNTWD 1269


>sp|Q04711|YM11B_YEAST Transposon Ty1-ML1 Gag-Pol polyprotein
            OS=Saccharomyces cerevisiae GN=TY1B-ML1 PE=2 SV=2
          Length = 1755

 Score = 57.0 bits (136), Expect(2) = 2e-08
 Identities = 38/142 (26%), Positives = 69/142 (48%)
 Frame = -1

Query: 427  KARLVVKGYKQEHGIDFDVIFSPVVKMTTLRIVLGLVASGDWELIQMDVKTAFLHGDLHE 248
            KAR V +G  Q        + S  V    L   L L    ++ + Q+D+ +A+L+ D+ E
Sbjct: 1299 KARFVARGDIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKE 1358

Query: 247  EIYM**LDGFVAKGKEKMVCKLKRSLYGLKQAPQEWYRKFDTFMQSQRVSRS*IDHCLYT 68
            E+Y   +      G    + +LK+SLYGLKQ+   WY    +++    + +  ++     
Sbjct: 1359 ELY---IRPPPHLGMNDKLIRLKKSLYGLKQSGANWYETIKSYL----IKQCGMEEVRGW 1411

Query: 67   KRATEDSLIILVLYVDDMLIAS 2
                ++S + + L+VDDM++ S
Sbjct: 1412 SCVFKNSQVTICLFVDDMILFS 1433



 Score = 20.8 bits (42), Expect(2) = 2e-08
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 504  EKWYRAMLLEMESLEKNDTWD 442
            EK+  A   E+  L K +TWD
Sbjct: 1248 EKYIEAYHKEVNQLLKMNTWD 1268


>sp|Q12316|YG13B_YEAST Transposon Ty1-GR3 Gag-Pol polyprotein
            OS=Saccharomyces cerevisiae GN=TY1B-GR3 PE=1 SV=3
          Length = 1755

 Score = 57.0 bits (136), Expect(2) = 2e-08
 Identities = 38/142 (26%), Positives = 69/142 (48%)
 Frame = -1

Query: 427  KARLVVKGYKQEHGIDFDVIFSPVVKMTTLRIVLGLVASGDWELIQMDVKTAFLHGDLHE 248
            KAR V +G  Q        + S  V    L   L L    ++ + Q+D+ +A+L+ D+ E
Sbjct: 1299 KARFVARGDIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKE 1358

Query: 247  EIYM**LDGFVAKGKEKMVCKLKRSLYGLKQAPQEWYRKFDTFMQSQRVSRS*IDHCLYT 68
            E+Y   +      G    + +LK+SLYGLKQ+   WY    +++    + +  ++     
Sbjct: 1359 ELY---IRPPPHLGMNDKLIRLKKSLYGLKQSGANWYETIKSYL----IKQCGMEEVRGW 1411

Query: 67   KRATEDSLIILVLYVDDMLIAS 2
                ++S + + L+VDDM++ S
Sbjct: 1412 SCVFKNSQVTICLFVDDMILFS 1433



 Score = 20.8 bits (42), Expect(2) = 2e-08
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 504  EKWYRAMLLEMESLEKNDTWD 442
            EK+  A   E+  L K +TWD
Sbjct: 1248 EKYIEAYHKEVNQLLKMNTWD 1268


>sp|Q12269|YG12B_YEAST Transposon Ty1-GR2 Gag-Pol polyprotein
            OS=Saccharomyces cerevisiae GN=TY1B-GR2 PE=3 SV=3
          Length = 1755

 Score = 57.0 bits (136), Expect(2) = 2e-08
 Identities = 38/142 (26%), Positives = 69/142 (48%)
 Frame = -1

Query: 427  KARLVVKGYKQEHGIDFDVIFSPVVKMTTLRIVLGLVASGDWELIQMDVKTAFLHGDLHE 248
            KAR V +G  Q        + S  V    L   L L    ++ + Q+D+ +A+L+ D+ E
Sbjct: 1299 KARFVARGDIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKE 1358

Query: 247  EIYM**LDGFVAKGKEKMVCKLKRSLYGLKQAPQEWYRKFDTFMQSQRVSRS*IDHCLYT 68
            E+Y   +      G    + +LK+SLYGLKQ+   WY    +++    + +  ++     
Sbjct: 1359 ELY---IRPPPHLGMNDKLIRLKKSLYGLKQSGANWYETIKSYL----IKQCGMEEVRGW 1411

Query: 67   KRATEDSLIILVLYVDDMLIAS 2
                ++S + + L+VDDM++ S
Sbjct: 1412 SCVFKNSQVTICLFVDDMILFS 1433



 Score = 20.8 bits (42), Expect(2) = 2e-08
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 504  EKWYRAMLLEMESLEKNDTWD 442
            EK+  A   E+  L K +TWD
Sbjct: 1248 EKYIEAYHKEVNQLLKMNTWD 1268
tr_hit_id Q9ZRJ0
Definition tr|Q9ZRJ0|Q9ZRJ0_TOBAC Retrotransposon Tto1 DNA OS=Nicotiana tabacum
Align length 140
Score (bit) 179.0
E-value 7.0e-49
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913915|Adiantum capillus-veneris mRNA, clone:
YMU001_000037_G06.
         (538 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9ZRJ0|Q9ZRJ0_TOBAC Retrotransposon Tto1 DNA OS=Nicotiana tab...   179   7e-49
tr|B1N668|B1N668_SOLLC Copia LTR rider OS=Solanum lycopersicum G...   168   2e-48
tr|Q5JQV7|Q5JQV7_ORYSA OSJNBa0061C06.5 protein OS=Oryza sativa G...   174   2e-48
tr|Q4JQ47|Q4JQ47_PTEAQ Reverse transcriptase (Fragment) OS=Pteri...   193   6e-48
tr|Q5JQU4|Q5JQU4_ORYSA OSJNBa0061C06.9 protein OS=Oryza sativa G...   171   1e-47
tr|Q53ND1|Q53ND1_ORYSJ Os11g0157000 protein OS=Oryza sativa subs...   171   1e-47
tr|Q5MG99|Q5MG99_IPOBA Hypothetical retrotransposon OS=Ipomoea b...   177   1e-47
tr|A5B5N4|A5B5N4_VITVI Putative uncharacterized protein OS=Vitis...   175   1e-47
tr|Q0E1S6|Q0E1S6_ORYSJ Os02g0309000 protein OS=Oryza sativa subs...   171   1e-47
tr|A5C844|A5C844_VITVI Putative uncharacterized protein OS=Vitis...   174   2e-47
tr|A5CBM1|A5CBM1_VITVI Putative uncharacterized protein OS=Vitis...   174   2e-47
tr|Q6L4V3|Q6L4V3_ORYSJ Putative polyprotein OS=Oryza sativa subs...   170   2e-47
tr|A5BK92|A5BK92_VITVI Putative uncharacterized protein OS=Vitis...   174   2e-47
tr|A5BJQ3|A5BJQ3_VITVI Putative uncharacterized protein OS=Vitis...   174   2e-47
tr|A5C6L3|A5C6L3_VITVI Putative uncharacterized protein OS=Vitis...   174   2e-47
tr|Q7G2K5|Q7G2K5_ORYSJ Retrotransposon protein, putative, Ty1-co...   172   3e-47
tr|Q8LNW7|Q8LNW7_ORYSJ Putative polyprotein OS=Oryza sativa subs...   172   3e-47
tr|A5CAX7|A5CAX7_VITVI Putative uncharacterized protein OS=Vitis...   174   3e-47
tr|Q0J4E9|Q0J4E9_ORYSJ Os08g0518300 protein OS=Oryza sativa subs...   170   4e-47
tr|A5AS37|A5AS37_VITVI Putative uncharacterized protein OS=Vitis...   172   5e-47
tr|Q2QP36|Q2QP36_ORYSJ Retrotransposon protein, putative, Ty1-co...   170   5e-47
tr|A5C9A6|A5C9A6_VITVI Putative uncharacterized protein OS=Vitis...   172   6e-47
tr|A5BD56|A5BD56_VITVI Putative uncharacterized protein OS=Vitis...   173   6e-47
tr|A5AVU6|A5AVU6_VITVI Putative uncharacterized protein OS=Vitis...   172   1e-46
tr|A5CA02|A5CA02_VITVI Putative uncharacterized protein OS=Vitis...   172   1e-46
tr|Q6AUC7|Q6AUC7_ORYSJ Putative polyprotein OS=Oryza sativa subs...   172   1e-46
tr|A5BA89|A5BA89_VITVI Putative uncharacterized protein OS=Vitis...   172   2e-46
tr|A5BC72|A5BC72_VITVI Putative uncharacterized protein OS=Vitis...   174   2e-46
tr|A5ATI4|A5ATI4_VITVI Putative uncharacterized protein OS=Vitis...   175   2e-46
tr|B8YLY4|B8YLY4_MEDTR Gag-Pol polyprotein OS=Medicago truncatul...   169   3e-46

>tr|Q9ZRJ0|Q9ZRJ0_TOBAC Retrotransposon Tto1 DNA OS=Nicotiana tabacum
            PE=4 SV=1
          Length = 1338

 Score =  179 bits (454), Expect(2) = 7e-49
 Identities = 88/140 (62%), Positives = 110/140 (78%)
 Frame = -1

Query: 427  KARLVVKGYKQEHGIDFDVIFSPVVKMTTLRIVLGLVASGDWELIQMDVKTAFLHGDLHE 248
            KARLVVKG+ Q  GIDFD IFSPVVKMT++R VLGL AS + E+ QMDVKTAFLHGDL E
Sbjct: 876  KARLVVKGFNQRKGIDFDEIFSPVVKMTSIRTVLGLAASLNLEVEQMDVKTAFLHGDLEE 935

Query: 247  EIYM**LDGFVAKGKEKMVCKLKRSLYGLKQAPQEWYRKFDTFMQSQRVSRS*IDHCLYT 68
            EIYM   DGF  KGKE  VC+L++SLYGLKQAP++WY+KF++ M      ++  DHC++ 
Sbjct: 936  EIYMEQPDGFQQKGKEDYVCRLRKSLYGLKQAPRQWYKKFESVMGQHGYKKTTSDHCVFA 995

Query: 67   KRATEDSLIILVLYVDDMLI 8
            ++ ++D  IIL+LYVDDMLI
Sbjct: 996  QKFSDDDFIILLLYVDDMLI 1015



 Score = 38.1 bits (87), Expect(2) = 7e-49
 Identities = 17/36 (47%), Positives = 24/36 (66%)
 Frame = -2

Query: 531 KEASTSSHSEKWYRAMLLEMESLEKNDTWDLVHLPR 424
           +EA    H EKW  AM  E++SL +N T++LV LP+
Sbjct: 816 EEAIDDEHKEKWIEAMQDEIKSLHENKTFELVKLPK 851


>tr|B1N668|B1N668_SOLLC Copia LTR rider OS=Solanum lycopersicum
            GN=LYC_68t000004 PE=4 SV=1
          Length = 1307

 Score =  168 bits (426), Expect(2) = 2e-48
 Identities = 82/146 (56%), Positives = 109/146 (74%)
 Frame = -1

Query: 439  GAFAKARLVVKGYKQEHGIDFDVIFSPVVKMTTLRIVLGLVASGDWELIQMDVKTAFLHG 260
            G   KAR+V +G+ Q  G+D++ IFSPVV+ T++R++L +VA  + EL Q+DVKTAFLHG
Sbjct: 852  GVKYKARVVARGFNQREGVDYNEIFSPVVRHTSIRVLLAIVAHQNLELEQLDVKTAFLHG 911

Query: 259  DLHEEIYM**LDGFVAKGKEKMVCKLKRSLYGLKQAPQEWYRKFDTFMQSQRVSRS*IDH 80
            +L EEIYM   DGF   GKE  VCKLK+SLYGLKQ+P++WY++FD++M     +RS  D 
Sbjct: 912  ELEEEIYMTQPDGFQVPGKENHVCKLKKSLYGLKQSPRQWYKRFDSYMVKLGYTRSSYDC 971

Query: 79   CLYTKRATEDSLIILVLYVDDMLIAS 2
            C+Y  R  +DS I LVLYVDDMLIA+
Sbjct: 972  CVYYNRLNDDSFIYLVLYVDDMLIAA 997



 Score = 47.8 bits (112), Expect(2) = 2e-48
 Identities = 24/35 (68%), Positives = 25/35 (71%)
 Frame = -2

Query: 531 KEASTSSHSEKWYRAMLLEMESLEKNDTWDLVHLP 427
           KEA  SS SEKW+ AM  EMESL KN TWDLV  P
Sbjct: 795 KEAILSSDSEKWFAAMGDEMESLHKNQTWDLVIQP 829


>tr|Q5JQV7|Q5JQV7_ORYSA OSJNBa0061C06.5 protein OS=Oryza sativa
           GN=OSJNBa0061C06.5 PE=4 SV=1
          Length = 621

 Score =  174 bits (440), Expect(2) = 2e-48
 Identities = 88/145 (60%), Positives = 113/145 (77%)
 Frame = -1

Query: 436 AFAKARLVVKGYKQEHGIDFDVIFSPVVKMTTLRIVLGLVASGDWELIQMDVKTAFLHGD 257
           A  KARLV KGY Q  GIDF+ +FSPVVK +++R +L +VA  D+EL QMDVKTAFLHG+
Sbjct: 264 AMYKARLVAKGYSQIPGIDFNDVFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGE 323

Query: 256 LHEEIYM**LDGFVAKGKEKMVCKLKRSLYGLKQAPQEWYRKFDTFMQSQRVSRS*IDHC 77
           L E+IYM   +GFV  GKE +VC+LK+SLYGLKQ+P++WY++FD+FM SQ+  RS  D C
Sbjct: 324 LEEDIYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSC 383

Query: 76  LYTKRATEDSLIILVLYVDDMLIAS 2
           +Y K A + S I L+LYVDDMLIA+
Sbjct: 384 VYVKVA-DGSAIYLLLYVDDMLIAA 407



 Score = 42.4 bits (98), Expect(2) = 2e-48
 Identities = 20/35 (57%), Positives = 23/35 (65%)
 Frame = -2

Query: 528 EASTSSHSEKWYRAMLLEMESLEKNDTWDLVHLPR 424
           EA  S    +W  AM  EMESLEKN TW+LV LP+
Sbjct: 207 EAIVSDDCNRWITAMHDEMESLEKNHTWELVKLPK 241


>tr|Q4JQ47|Q4JQ47_PTEAQ Reverse transcriptase (Fragment)
           OS=Pteridium aquilinum GN=RT PE=4 SV=1
          Length = 149

 Score =  193 bits (490), Expect = 6e-48
 Identities = 92/142 (64%), Positives = 116/142 (81%)
 Frame = -1

Query: 427 KARLVVKGYKQEHGIDFDVIFSPVVKMTTLRIVLGLVASGDWELIQMDVKTAFLHGDLHE 248
           KARLV KG+KQ+HG+DFD IFSPVVKMTTLR VLGLVA  D +L+QMDVKTAFLHGDL E
Sbjct: 6   KARLVAKGFKQQHGVDFDEIFSPVVKMTTLRTVLGLVAIEDMDLVQMDVKTAFLHGDLEE 65

Query: 247 EIYM**LDGFVAKGKEKMVCKLKRSLYGLKQAPQEWYRKFDTFMQSQRVSRS*IDHCLYT 68
           ++YM   +G+   GKE++VCKL ++LYGLK   ++WY+KFDTFM SQ   RS  D+CLYT
Sbjct: 66  DVYMAQPEGYEQPGKEQLVCKLNKALYGLKPGSRQWYQKFDTFMHSQEFKRSQEDYCLYT 125

Query: 67  KRATEDSLIILVLYVDDMLIAS 2
           K+ ++ S IIL+LYVDD++IA+
Sbjct: 126 KKLSDGSQIILILYVDDLVIAT 147


>tr|Q5JQU4|Q5JQU4_ORYSA OSJNBa0061C06.9 protein OS=Oryza sativa
            GN=OSJNBa0061C06.9 PE=4 SV=1
          Length = 1007

 Score =  171 bits (433), Expect(2) = 1e-47
 Identities = 87/145 (60%), Positives = 112/145 (77%)
 Frame = -1

Query: 436  AFAKARLVVKGYKQEHGIDFDVIFSPVVKMTTLRIVLGLVASGDWELIQMDVKTAFLHGD 257
            A  KARLV KGY Q  GIDF+ +FSPVVK +++R +L +VA  D+EL QMDVKTAFLHG+
Sbjct: 660  AMYKARLVAKGYSQIPGIDFNDVFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGE 719

Query: 256  LHEEIYM**LDGFVAKGKEKMVCKLKRSLYGLKQAPQEWYRKFDTFMQSQRVSRS*IDHC 77
            L E+IYM   +GFV  GKE +VC+LK+SLYGLKQ+ ++WY++FD+FM SQ+  RS  D C
Sbjct: 720  LEEDIYMEQSEGFVVPGKENLVCRLKKSLYGLKQSSRQWYKRFDSFMLSQKFRRSNYDSC 779

Query: 76   LYTKRATEDSLIILVLYVDDMLIAS 2
            +Y K A + S I L+LYVDDMLIA+
Sbjct: 780  VYVKVA-DGSAIYLLLYVDDMLIAA 803



 Score = 42.4 bits (98), Expect(2) = 1e-47
 Identities = 20/35 (57%), Positives = 23/35 (65%)
 Frame = -2

Query: 528 EASTSSHSEKWYRAMLLEMESLEKNDTWDLVHLPR 424
           EA  S    +W  AM  EMESLEKN TW+LV LP+
Sbjct: 603 EAIVSDDCNRWITAMHDEMESLEKNHTWELVKLPK 637


>tr|Q53ND1|Q53ND1_ORYSJ Os11g0157000 protein OS=Oryza sativa subsp.
            japonica GN=Os11g0157000 PE=4 SV=1
          Length = 2340

 Score =  171 bits (432), Expect(2) = 1e-47
 Identities = 85/142 (59%), Positives = 110/142 (77%)
 Frame = -1

Query: 427  KARLVVKGYKQEHGIDFDVIFSPVVKMTTLRIVLGLVASGDWELIQMDVKTAFLHGDLHE 248
            KARL+ KGY Q  GIDF+ +FSPVVK +++R +L +VA  D+EL QMDVKTAFLHG+L E
Sbjct: 1088 KARLIAKGYSQIPGIDFNDVFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEE 1147

Query: 247  EIYM**LDGFVAKGKEKMVCKLKRSLYGLKQAPQEWYRKFDTFMQSQRVSRS*IDHCLYT 68
            +IYM    GFV  GKE +VC+LK+SLYGLKQ+P++WY++FD+FM SQ+  RS  D C+Y 
Sbjct: 1148 DIYMEQPKGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVYL 1207

Query: 67   KRATEDSLIILVLYVDDMLIAS 2
            K   + S I L+LYVDDMLIA+
Sbjct: 1208 K-VVDGSAIYLLLYVDDMLIAA 1228



 Score = 42.4 bits (98), Expect(2) = 1e-47
 Identities = 20/35 (57%), Positives = 23/35 (65%)
 Frame = -2

Query: 528  EASTSSHSEKWYRAMLLEMESLEKNDTWDLVHLPR 424
            EA  S    +W  AM  EMESLEKN TW+LV LP+
Sbjct: 1028 EAIVSDDCNRWITAMHDEMESLEKNHTWELVKLPK 1062


>tr|Q5MG99|Q5MG99_IPOBA Hypothetical retrotransposon OS=Ipomoea
            batatas PE=4 SV=1
          Length = 1415

 Score =  177 bits (449), Expect(2) = 1e-47
 Identities = 86/140 (61%), Positives = 108/140 (77%)
 Frame = -1

Query: 427  KARLVVKGYKQEHGIDFDVIFSPVVKMTTLRIVLGLVASGDWELIQMDVKTAFLHGDLHE 248
            KARLVVKG+ Q+ GIDFD IFSPVVK +++R+VLGL A  D E+ QMDVKTAFLHGDL E
Sbjct: 873  KARLVVKGFSQKKGIDFDEIFSPVVKFSSIRVVLGLAARLDIEIEQMDVKTAFLHGDLDE 932

Query: 247  EIYM**LDGFVAKGKEKMVCKLKRSLYGLKQAPQEWYRKFDTFMQSQRVSRS*IDHCLYT 68
            EIYM   +GF  KGKE  VC+LK+SLYGLKQAP++WY+KF + M      ++  DHC++ 
Sbjct: 933  EIYMEQPEGFKVKGKEDYVCRLKKSLYGLKQAPRQWYKKFTSVMSKHGYKKTSSDHCVFV 992

Query: 67   KRATEDSLIILVLYVDDMLI 8
             R ++D  +IL+LYVDDMLI
Sbjct: 993  NRYSDDDFVILLLYVDDMLI 1012



 Score = 35.8 bits (81), Expect(2) = 1e-47
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = -2

Query: 531 KEASTSSHSEKWYRAMLLEMESLEKNDTWDLVHLPRH 421
           +EA  S    +W+ AM  EM SL  NDT++LV  P++
Sbjct: 813 EEAMESDQKRQWFEAMQEEMNSLYVNDTFELVKAPKN 849


>tr|A5B5N4|A5B5N4_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_005765 PE=4 SV=1
          Length = 1261

 Score =  175 bits (444), Expect(2) = 1e-47
 Identities = 86/141 (60%), Positives = 113/141 (80%)
 Frame = -1

Query: 427  KARLVVKGYKQEHGIDFDVIFSPVVKMTTLRIVLGLVASGDWELIQMDVKTAFLHGDLHE 248
            KARLVVKG++Q+ GID+  IFSPVVKM+T+R+VLG+VA+ +  L Q+DVKTAFLHGDL E
Sbjct: 810  KARLVVKGFQQKEGIDYTEIFSPVVKMSTIRLVLGMVAAENLHLEQLDVKTAFLHGDLEE 869

Query: 247  EIYM**LDGFVAKGKEKMVCKLKRSLYGLKQAPQEWYRKFDTFMQSQRVSRS*IDHCLYT 68
            ++YM   +GF+ +G+E +VCKL++SLYGLKQAP++WY+KFD FM      R   DHC Y 
Sbjct: 870  DLYMIQPEGFIVQGQENLVCKLRKSLYGLKQAPRQWYKKFDNFMHRIGFKRCEADHCCYF 929

Query: 67   KRATEDSLIILVLYVDDMLIA 5
            K + ++S IIL+LYVDDMLIA
Sbjct: 930  K-SFDNSYIILLLYVDDMLIA 949



 Score = 37.7 bits (86), Expect(2) = 1e-47
 Identities = 18/37 (48%), Positives = 21/37 (56%)
 Frame = -2

Query: 537 CVKEASTSSHSEKWYRAMLLEMESLEKNDTWDLVHLP 427
           C  EA    +S KW  AM  EM+SL  N TW+L  LP
Sbjct: 749 CYDEALQDENSSKWELAMKDEMDSLLGNQTWZLTELP 785


>tr|Q0E1S6|Q0E1S6_ORYSJ Os02g0309000 protein OS=Oryza sativa subsp.
            japonica GN=Os02g0309000 PE=4 SV=1
          Length = 1211

 Score =  171 bits (432), Expect(2) = 1e-47
 Identities = 86/142 (60%), Positives = 110/142 (77%)
 Frame = -1

Query: 427  KARLVVKGYKQEHGIDFDVIFSPVVKMTTLRIVLGLVASGDWELIQMDVKTAFLHGDLHE 248
            KARLV KGY Q  GIDF+ +FSPVVK +++R +L +VA  D+EL QMDVKTAFLHG+L E
Sbjct: 859  KARLVAKGYSQIPGIDFNDVFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEE 918

Query: 247  EIYM**LDGFVAKGKEKMVCKLKRSLYGLKQAPQEWYRKFDTFMQSQRVSRS*IDHCLYT 68
            +IYM   +GFV  GKE +VC+LK+SLYGLKQ+P++WY++FD+FM SQ+  RS  D C+Y 
Sbjct: 919  DIYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVYL 978

Query: 67   KRATEDSLIILVLYVDDMLIAS 2
            K   + S I L LYVDDMLIA+
Sbjct: 979  K-VVDCSAIYLFLYVDDMLIAA 999



 Score = 42.4 bits (98), Expect(2) = 1e-47
 Identities = 20/35 (57%), Positives = 23/35 (65%)
 Frame = -2

Query: 528 EASTSSHSEKWYRAMLLEMESLEKNDTWDLVHLPR 424
           EA  S    +W  AM  EMESLEKN TW+LV LP+
Sbjct: 799 EAIVSDDCNRWITAMHDEMESLEKNHTWELVKLPK 833


>tr|A5C844|A5C844_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_044399 PE=4 SV=1
          Length = 1264

 Score =  174 bits (441), Expect(2) = 2e-47
 Identities = 86/141 (60%), Positives = 111/141 (78%)
 Frame = -1

Query: 427  KARLVVKGYKQEHGIDFDVIFSPVVKMTTLRIVLGLVASGDWELIQMDVKTAFLHGDLHE 248
            KARLVVKG++Q  GID+  IFSPVVKM+T+R+VLG+VA  +  L Q+DVKTAFLHGDL E
Sbjct: 813  KARLVVKGFQQXEGIDYTEIFSPVVKMSTIRLVLGMVAVENLHLEQLDVKTAFLHGDLEE 872

Query: 247  EIYM**LDGFVAKGKEKMVCKLKRSLYGLKQAPQEWYRKFDTFMQSQRVSRS*IDHCLYT 68
            ++YM   +GF+ +G+E +VCKL++SLYGLKQAP++WY+KFD FM      R   DHC Y 
Sbjct: 873  DLYMIQPEGFIVQGQENLVCKLRKSLYGLKQAPRQWYKKFDNFMHRIGFKRCEADHCCYV 932

Query: 67   KRATEDSLIILVLYVDDMLIA 5
            K + ++S IIL+LYVDDMLIA
Sbjct: 933  K-SFDNSYIILLLYVDDMLIA 952



 Score = 38.5 bits (88), Expect(2) = 2e-47
 Identities = 18/37 (48%), Positives = 21/37 (56%)
 Frame = -2

Query: 537 CVKEASTSSHSEKWYRAMLLEMESLEKNDTWDLVHLP 427
           C  EA    +S KW  AM  EM+SL  N TW+L  LP
Sbjct: 766 CYBEALQDENSSKWELAMKDEMDSLLGNQTWELTELP 802