BP913919
Clone id YMU001_000037_G11
Library
Length 544
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000037_G11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
CTATTATGTAACACCATGGACCACCCAACAAAGCATCACACCCCAAAGGCATGATAAAGA
AATCCTCTCGGTCCCCATATCCTGACACATGAAGATGTAGCTTCCCAATGACTGGCATTA
CCAGCAGCATCTCATACCCTGGGCAAGCAAATGTGGCCTCATGAGCCGATACTCATCTCC
TTGTTGAAGATATCTATCACAACACTATTATGTAACACCATGGACCACCCAACAAAGCAT
CACACCCCAAAGGCATGATAAAGAAATCCTCTCGGTCCCCATATCCTGACACATGAAGAT
GTAGCTTCCCAATGACTGGCATTACCAGCAGCATCTCATACCCTGGGCAAGCAAATGTGG
CCTCATGAGCCGATACTCATCTCCTCTGTTTTGATTCCCAACTTTGCCACCAGCTCTGGA
CAGATGAAGTTAGCCCTTGCTCCTGGGTCAAAGAAGATCAAGATTTCTTGATCTCTCACT
TTGTCCCAAGCTCTACATAGCTCTGATGAAGCATCACCCTCCTCATCTCCAATGAGGTCA
ATCC
■■Homology search results ■■ -
sp_hit_id Q5HLG3
Definition sp|Q5HLG3|LYTS_STAEQ Sensor protein lytS OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A)
Align length 38
Score (bit) 30.8
E-value 4.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP913919|Adiantum capillus-veneris mRNA, clone:
YMU001_000037_G11.
(544 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q5HLG3|LYTS_STAEQ Sensor protein lytS OS=Staphylococcus epide... 31 4.4
sp|P30668|TBB_SCHCO Tubulin beta chain OS=Schizophyllum commune ... 30 9.9
sp|Q6NVK9|SAAL1_XENTR Protein saal1 OS=Xenopus tropicalis GN=saa... 30 9.9

>sp|Q5HLG3|LYTS_STAEQ Sensor protein lytS OS=Staphylococcus
epidermidis (strain ATCC 35984 / RP62A) GN=lytS PE=3
SV=1
Length = 591

Score = 30.8 bits (68), Expect = 4.4
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -1

Query: 316 VIGKLHLHVSGYGDREDFFIMPLGCDALLGGPWCYIIV 203
V G ++ H+S + ++ +G L+GGPW IIV
Sbjct: 68 VSGDIYYHLSKDASMANTRVLTIGVSGLIGGPWVAIIV 105


>sp|P30668|TBB_SCHCO Tubulin beta chain OS=Schizophyllum commune
GN=TUB-2 PE=3 SV=1
Length = 445

Score = 29.6 bits (65), Expect = 9.9
Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 5/101 (4%)
Frame = +3

Query: 69 RSPYPDT*RCSF---PMTGITSSISYPGQANVAS*ADTHLLVEDIYHNTIM*HHGPPNKA 239
R YPD C+F P ++ ++ P A ++ H LVE+ + N+A
Sbjct: 156 REEYPDRMMCTFSVVPSPKVSDTVVEPYNATLS----VHQLVENSDETFCI-----DNEA 206

Query: 240 SHPKGM-IKKSSRSPYPDT*RC-SFPMTGITSSISYPGQAN 356
+ K S Y D SF M+GIT+S+ +PGQ N
Sbjct: 207 LYDICFRTLKLSTPTYGDLNHLVSFVMSGITTSLRFPGQLN 247


>sp|Q6NVK9|SAAL1_XENTR Protein saal1 OS=Xenopus tropicalis GN=saal1
PE=2 SV=1
Length = 462

Score = 29.6 bits (65), Expect = 9.9
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Frame = -3

Query: 530 GDEEGDASSELCRAWDKVRDQEILIFFDPGARANFICPELVAKLGIKTE-----EMSIGS 366
GD + + E+C+ WD ++E+ +F F PE++ + K++ EM +G
Sbjct: 57 GDLDEELEDEICKVWDMSMNEEVALFLQ-----GFNAPEILLGVIAKSKCSRLTEMCVGI 111

Query: 365 *GHI 354
G++
Sbjct: 112 LGNM 115


tr_hit_id B5U9W1
Definition tr|B5U9W1|B5U9W1_LOTJA Putative uncharacterized protein OS=Lotus japonicus
Align length 47
Score (bit) 34.3
E-value 4.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP913919|Adiantum capillus-veneris mRNA, clone:
YMU001_000037_G11.
(544 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B5U9W1|B5U9W1_LOTJA Putative uncharacterized protein OS=Lotus... 34 4.4
tr|B5U9W0|B5U9W0_LOTJA Putative uncharacterized protein OS=Lotus... 34 4.4
tr|B5U9V8|B5U9V8_LOTJA Putative uncharacterized protein OS=Lotus... 34 4.4
tr|A7SEG8|A7SEG8_NEMVE Predicted protein (Fragment) OS=Nematoste... 34 5.8
tr|B5U9V7|B5U9V7_LOTJA Putative uncharacterized protein OS=Lotus... 33 7.4

>tr|B5U9W1|B5U9W1_LOTJA Putative uncharacterized protein OS=Lotus
japonicus PE=4 SV=1
Length = 1558

Score = 34.3 bits (77), Expect = 4.4
Identities = 17/47 (36%), Positives = 28/47 (59%)
Frame = -3

Query: 533 IGDEEGDASSELCRAWDKVRDQEILIFFDPGARANFICPELVAKLGI 393
+ +EG S+ + K+ ++E+LI D GA +NFI +LV +L I
Sbjct: 413 LNSKEGLTSNRSFKVKGKIGNREVLILIDCGATSNFISQDLVVELEI 459


>tr|B5U9W0|B5U9W0_LOTJA Putative uncharacterized protein OS=Lotus
japonicus PE=4 SV=1
Length = 1558

Score = 34.3 bits (77), Expect = 4.4
Identities = 17/47 (36%), Positives = 28/47 (59%)
Frame = -3

Query: 533 IGDEEGDASSELCRAWDKVRDQEILIFFDPGARANFICPELVAKLGI 393
+ +EG S+ + K+ ++E+LI D GA +NFI +LV +L I
Sbjct: 413 LNSKEGLTSNRSFKVKGKIGNREVLILIDCGATSNFISQDLVVELEI 459


>tr|B5U9V8|B5U9V8_LOTJA Putative uncharacterized protein OS=Lotus
japonicus PE=4 SV=1
Length = 1558

Score = 34.3 bits (77), Expect = 4.4
Identities = 17/47 (36%), Positives = 28/47 (59%)
Frame = -3

Query: 533 IGDEEGDASSELCRAWDKVRDQEILIFFDPGARANFICPELVAKLGI 393
+ +EG S+ + K+ ++E+LI D GA +NFI +LV +L I
Sbjct: 413 LNSKEGLTSNRSFKVKGKIGNREVLILIDCGATSNFISQDLVVELEI 459


>tr|A7SEG8|A7SEG8_NEMVE Predicted protein (Fragment) OS=Nematostella
vectensis GN=v1g115333 PE=4 SV=1
Length = 250

Score = 33.9 bits (76), Expect = 5.8
Identities = 29/124 (23%), Positives = 40/124 (32%), Gaps = 6/124 (4%)
Frame = +2

Query: 2 YYVTPWTTQQSITPQRHDKEILSVPIS*HMKM*LPNDWHYQQHLIPWASK---CGLMSRY 172
YY+ PW +Q + P W + HL PW S+ C SRY
Sbjct: 12 YYLCPWGSQYYLCP-----------------------WGSRYHLFPWGSRYYLCPWGSRY 48

Query: 173 SSPC*RYL---SQHYYVTPWTTQQSITPQRHDKEILSVPIS*HMKM*LPNDWHYQQHLIP 343
YL YY+ PW +Q + P W + +L P
Sbjct: 49 ------YLCLWGSQYYLCPWGSQYYLCP-----------------------WGSRYYLCP 79

Query: 344 WASK 355
W S+
Sbjct: 80 WGSQ 83


>tr|B5U9V7|B5U9V7_LOTJA Putative uncharacterized protein OS=Lotus
japonicus PE=4 SV=1
Length = 1520

Score = 33.5 bits (75), Expect = 7.4
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = -3

Query: 533 IGDEEGDASSELCRAWDKVRDQEILIFFDPGARANFICPELVAKLGI 393
+ +EG S+ + K+ ++E+LI D GA NFI +LV +L I
Sbjct: 375 LNSKEGLTSNRSFKVKGKIGNREVLILIDCGATINFISQDLVVELEI 421