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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913922
Clone id YMU001_000037_H02
Library
Length 280
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000037_H02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GAGTACCTGCGCAAAATCATCAAAATACGTTAGGTCACAAGATCGCCATAGCAGGCCATT
CTTCATAGCTGCTCATGATAGGCCTTTCACTATCCAGTCAACTTCATCTGCTGGCATTGG
TTTACAATTTTGGCAATTGGAGGTCATCATACTATGCCCCAACTTAATTAAATTGTATAG
TATAATGTGATCCACCAAATTAATCTTGTGAAGTGCACATTTTGCATGTACATGTACAAA
CTCAAGTTGTAAAACTTGTAGAACTTGTACTCATTTCCAT
■■Homology search results ■■ -
sp_hit_id Q9V3G7
Definition sp|Q9V3G7|PSMD6_DROME 26S proteasome non-ATPase regulatory subunit 6 OS=Drosophila melanogaster
Align length 39
Score (bit) 30.0
E-value 3.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913922|Adiantum capillus-veneris mRNA, clone:
YMU001_000037_H02.
         (280 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9V3G7|PSMD6_DROME 26S proteasome non-ATPase regulatory subun...    30   3.7  
sp|P38314|SDS24_YEAST Protein SDS24 OS=Saccharomyces cerevisiae ...    29   6.4  
sp|A6ZLF4|SDS24_YEAS7 Protein SDS24 OS=Saccharomyces cerevisiae ...    29   6.4  
sp|O93450|MTA_PARCR Metallothionein A OS=Parachaenichthys charco...    29   6.4  
sp|P68508|MTA_PAGBO Metallothionein A OS=Pagothenia borchgrevink...    29   6.4  
sp|O93609|MTA_PAGBE Metallothionein A OS=Pagothenia bernacchii G...    29   6.4  
sp|P62339|MTA_NOTCO Metallothionein A OS=Notothenia coriiceps ne...    29   6.4  
sp|P68507|MTA_GYMAC Metallothionein A OS=Gymnodraco acuticeps GN...    29   6.4  
sp|P62338|MTA_CHIRA Metallothionein A OS=Chionodraco rastrospino...    29   6.4  
sp|P68506|MTA_CHIHA Metallothionein A OS=Chionodraco hamatus GN=...    29   6.4  
sp|O93593|MTA_CHAAC Metallothionein A OS=Chaenocephalus aceratus...    29   6.4  
sp|Q9C8Y6|FBD5_ARATH FBD-associated F-box protein At1g66310 OS=A...    29   8.3  

>sp|Q9V3G7|PSMD6_DROME 26S proteasome non-ATPase regulatory subunit
           6 OS=Drosophila melanogaster GN=Rpn7 PE=1 SV=1
          Length = 389

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -2

Query: 210 HKINLVDHIILYNLIKLGHSMMTSNCQNCKPMPADEVDW 94
           H++++V H+I   L  L H ++T N    K +  +  DW
Sbjct: 136 HRLDIVFHLIRLGLFYLDHDLITRNIDKAKYLIEEGGDW 174


>sp|P38314|SDS24_YEAST Protein SDS24 OS=Saccharomyces cerevisiae
           GN=SDS24 PE=1 SV=1
          Length = 527

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = -2

Query: 186 IILYNLIKLGHSMMTSNCQNCKPMPADEV 100
           +++ N I + +  +T++CQN KP+P  E+
Sbjct: 167 LLVLNKITVSNKQLTADCQNGKPVPVGEM 195


>sp|A6ZLF4|SDS24_YEAS7 Protein SDS24 OS=Saccharomyces cerevisiae
           (strain YJM789) GN=SDS24 PE=3 SV=1
          Length = 527

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = -2

Query: 186 IILYNLIKLGHSMMTSNCQNCKPMPADEV 100
           +++ N I + +  +T++CQN KP+P  E+
Sbjct: 167 LLVLNKITVSNKQLTADCQNGKPVPVGEM 195


>sp|O93450|MTA_PARCR Metallothionein A OS=Parachaenichthys charcoti
           GN=mta PE=3 SV=1
          Length = 60

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +2

Query: 224 ACTCTNSSCKTCR 262
           +CTCTN SCK+C+
Sbjct: 17  SCTCTNCSCKSCK 29


>sp|P68508|MTA_PAGBO Metallothionein A OS=Pagothenia borchgrevinki
           GN=mta PE=3 SV=1
          Length = 60

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +2

Query: 224 ACTCTNSSCKTCR 262
           +CTCTN SCK+C+
Sbjct: 17  SCTCTNCSCKSCK 29


>sp|O93609|MTA_PAGBE Metallothionein A OS=Pagothenia bernacchii
           GN=mta PE=3 SV=1
          Length = 60

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +2

Query: 224 ACTCTNSSCKTCR 262
           +CTCTN SCK+C+
Sbjct: 17  SCTCTNCSCKSCK 29


>sp|P62339|MTA_NOTCO Metallothionein A OS=Notothenia coriiceps
           neglecta GN=mta PE=1 SV=1
          Length = 60

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +2

Query: 224 ACTCTNSSCKTCR 262
           +CTCTN SCK+C+
Sbjct: 17  SCTCTNCSCKSCK 29


>sp|P68507|MTA_GYMAC Metallothionein A OS=Gymnodraco acuticeps
           GN=mta PE=3 SV=1
          Length = 60

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +2

Query: 224 ACTCTNSSCKTCR 262
           +CTCTN SCK+C+
Sbjct: 17  SCTCTNCSCKSCK 29


>sp|P62338|MTA_CHIRA Metallothionein A OS=Chionodraco rastrospinosus
           GN=mta PE=3 SV=1
          Length = 60

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +2

Query: 224 ACTCTNSSCKTCR 262
           +CTCTN SCK+C+
Sbjct: 17  SCTCTNCSCKSCK 29


>sp|P68506|MTA_CHIHA Metallothionein A OS=Chionodraco hamatus GN=mta
           PE=3 SV=1
          Length = 60

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +2

Query: 224 ACTCTNSSCKTCR 262
           +CTCTN SCK+C+
Sbjct: 17  SCTCTNCSCKSCK 29
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913922|Adiantum capillus-veneris mRNA, clone:
YMU001_000037_H02.
         (280 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******