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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913923
Clone id YMU001_000037_H03
Library
Length 415
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000037_H03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AGGAATTGTAGCAAAAATCCCAACTCCCCCTCTTTAAAGGGAAGTGCCAGGTATAGACTC
GTGGTAGCCACCCACAAGACAATATAGCCATCAGCTCCATTATCCAAAGAAACAGAGCTC
ACAGAATGCATGGATGAATGGAGCACCTTGGAAAGCACTCTGCATCAAGCACTTCATAGA
CATTAAATCAAACAATGCTTTTAATGAATATGTGATTATATTTATGAAGATAGTAAATCT
GCCTGCACCCAATTCTGCTTGATAGCGACGAGTGCACTTGATCCGTTGAAACAGTATAGG
TGCAAGCAATCTTTGTTAAGAAATCCAGAATATTATCAAGAATGGAGAAATATTTCACGT
GCAATCCGTTTGGCAGTACCCAATTATGATCCTCAAGAGATGCACAACATACAAG
■■Homology search results ■■ -
sp_hit_id P0C7R4
Definition sp|P0C7R4|PP110_ARATH Pentatricopeptide repeat-containing protein At1g69290 OS=Arabidopsis thaliana
Align length 59
Score (bit) 30.8
E-value 2.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913923|Adiantum capillus-veneris mRNA, clone:
YMU001_000037_H03.
         (415 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P0C7R4|PP110_ARATH Pentatricopeptide repeat-containing protei...    31   2.2  
sp|Q80U19|DAAM2_MOUSE Disheveled-associated activator of morphog...    30   4.9  
sp|P49883|ECR_MANSE Ecdysone receptor OS=Manduca sexta GN=EcR PE...    29   6.4  
sp|Q86T65|DAAM2_HUMAN Disheveled-associated activator of morphog...    29   6.4  
sp|Q9LD18|POT4_ARATH Potassium transporter 4 OS=Arabidopsis thal...    29   8.4  
sp|Q9XBF8|MNMG_CAUCR tRNA uridine 5-carboxymethylaminomethyl mod...    29   8.4  

>sp|P0C7R4|PP110_ARATH Pentatricopeptide repeat-containing protein
           At1g69290 OS=Arabidopsis thaliana GN=At1g69290 PE=2 SV=1
          Length = 658

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +1

Query: 10  SKNPNSPSLKGSARYRLVVATHKTI*PSAPLSK-ETELTECMDEWSTLESTLHQALHRH 183
           S +P SPSL    +  L   +HK I  S  LS  +   T   D+ S+ ESTLH +L+ H
Sbjct: 16  SSSPESPSLYSFLKPSLF--SHKPITLSPSLSPPQNPKTLTPDQKSSFESTLHDSLNAH 72


>sp|Q80U19|DAAM2_MOUSE Disheveled-associated activator of
           morphogenesis 2 OS=Mus musculus GN=Daam2 PE=2 SV=3
          Length = 1115

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 17/84 (20%)
 Frame = +1

Query: 214 DYIYEDSKSACTQFCLIATSALDPLKQYRCKQSLL---------RNPEYYQEWRNISRAI 366
           D ++ D+KSA   F LI    L   + Y C  S+L         RN  Y+Q+W+ + R +
Sbjct: 347 DMVHIDTKSASQMFELIHKK-LKHTEAYPCLLSVLHHCLQMPYKRNGGYFQQWQLLDRIL 405

Query: 367 RLAV--------PNYDPQEMHNIQ 414
           +  V        P+  P E  N++
Sbjct: 406 QQIVLQDERGVDPDLAPLENFNVK 429


>sp|P49883|ECR_MANSE Ecdysone receptor OS=Manduca sexta GN=EcR PE=2
           SV=1
          Length = 556

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
 Frame = -1

Query: 331 ILDFLTKIACTYTVSTDQVHSSL-------SSRIGCRQIYYLHKYNHIFIKSIV*FNVYE 173
           I D L    C Y++S D VH +L       S R G  Q   + +    ++K++    VY 
Sbjct: 418 IEDLLHFCRCMYSMSMDNVHYALLTAIVIFSDRPGLEQPLLVEEIQRYYLKTL---RVYI 474

Query: 172 VLDAECFPRCSI 137
           +      PRC++
Sbjct: 475 LNQHSASPRCAV 486


>sp|Q86T65|DAAM2_HUMAN Disheveled-associated activator of
           morphogenesis 2 OS=Homo sapiens GN=DAAM2 PE=2 SV=3
          Length = 1068

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 17/84 (20%)
 Frame = +1

Query: 214 DYIYEDSKSACTQFCLIATSALDPLKQYRCKQSLL---------RNPEYYQEWRNISRAI 366
           D ++ D+KSA   F LI    L   + Y C  S+L         RN  Y+Q+W+ + R +
Sbjct: 347 DMVHIDTKSASQMFELIHKK-LKYTEAYPCLLSVLHHCLQMPYKRNGGYFQQWQLLDRIL 405

Query: 367 RLAV--------PNYDPQEMHNIQ 414
           +  V        P+  P E  N++
Sbjct: 406 QQIVLQDERGVDPDLAPLENFNVK 429


>sp|Q9LD18|POT4_ARATH Potassium transporter 4 OS=Arabidopsis
           thaliana GN=POT4 PE=2 SV=2
          Length = 789

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 10/49 (20%)
 Frame = -1

Query: 130 CIL*ALFL---WIME-------LMAILSCGWLPRVYTWHFPLKRGSWDF 14
           C L ALFL   WI+E       LM +   GW+P V T+ F +    W +
Sbjct: 450 CFLAALFLGTLWIIEGVYLSAALMKVTEGGWVPFVLTFIFMIAMYVWHY 498


>sp|Q9XBF8|MNMG_CAUCR tRNA uridine 5-carboxymethylaminomethyl
           modification enzyme mnmG OS=Caulobacter crescentus
           GN=mnmG PE=3 SV=1
          Length = 618

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 14/39 (35%), Positives = 25/39 (64%)
 Frame = -1

Query: 349 FSILDNILDFLTKIACTYTVSTDQVHSSLSSRIGCRQIY 233
           FS L++ +D + +IAC  T +T++ H  ++ RIG   +Y
Sbjct: 225 FSYLNHRID-VPQIACGVTYTTEETHRIIAERIGESLVY 262
tr_hit_id Q6ZB25
Definition tr|Q6ZB25|Q6ZB25_ORYSJ Putative uncharacterized protein OJ1267_E11.13 OS=Oryza sativa subsp. japonica
Align length 47
Score (bit) 33.5
E-value 5.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913923|Adiantum capillus-veneris mRNA, clone:
YMU001_000037_H03.
         (415 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6ZB25|Q6ZB25_ORYSJ Putative uncharacterized protein OJ1267_E...    33   5.4  
tr|Q0J641|Q0J641_ORYSJ Os08g0371900 protein OS=Oryza sativa subs...    33   5.4  
tr|A3BSJ3|A3BSJ3_ORYSJ Putative uncharacterized protein OS=Oryza...    33   5.4  
tr|Q2NEM6|Q2NEM6_METST Putative oxidoreductase OS=Methanosphaera...    33   5.4  
tr|B8I251|B8I251_CLOCE Heptaprenyl diphosphate synthase componen...    33   7.1  
tr|A7SCF3|A7SCF3_NEMVE Predicted protein OS=Nematostella vectens...    33   7.1  

>tr|Q6ZB25|Q6ZB25_ORYSJ Putative uncharacterized protein
           OJ1267_E11.13 OS=Oryza sativa subsp. japonica
           GN=OJ1267_E11.13 PE=4 SV=1
          Length = 737

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 5/47 (10%)
 Frame = -1

Query: 406 CASLEDHNWV-LPNGLHVKYFSILDNILDFL----TKIACTYTVSTD 281
           C  LE+H+   + N LH+KY SI D I++ L    T++ C  T++ D
Sbjct: 384 CEQLENHHLANIENLLHLKYLSIKDTIVNVLPTQITRLRCLQTLNVD 430


>tr|Q0J641|Q0J641_ORYSJ Os08g0371900 protein OS=Oryza sativa subsp.
           japonica GN=Os08g0371900 PE=4 SV=1
          Length = 702

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 5/47 (10%)
 Frame = -1

Query: 406 CASLEDHNWV-LPNGLHVKYFSILDNILDFL----TKIACTYTVSTD 281
           C  LE+H+   + N LH+KY SI D I++ L    T++ C  T++ D
Sbjct: 384 CEQLENHHLANIENLLHLKYLSIKDTIVNVLPTQITRLRCLQTLNVD 430


>tr|A3BSJ3|A3BSJ3_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_026015 PE=4 SV=1
          Length = 1080

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 5/47 (10%)
 Frame = -1

Query: 406 CASLEDHNWV-LPNGLHVKYFSILDNILDFL----TKIACTYTVSTD 281
           C  LE+H+   + N LH+KY SI D I++ L    T++ C  T++ D
Sbjct: 727 CEQLENHHLANIENLLHLKYLSIKDTIVNVLPTQITRLRCLQTLNVD 773


>tr|Q2NEM6|Q2NEM6_METST Putative oxidoreductase OS=Methanosphaera
           stadtmanae (strain DSM 3091) GN=Msp_1350 PE=4 SV=1
          Length = 379

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 9/88 (10%)
 Frame = -1

Query: 400 SLEDHNWVLPNGLHVKYF-SILDNILDFL---TKIACTYTVSTDQVHSSLSSR-----IG 248
           +L D  ++  NG    +  SIL+   D +   TK+   +  + D +   L+ +     + 
Sbjct: 28  NLIDTAYLYHNGESESFLKSILEKRRDEILISTKLPVWFVKNEDDLEKYLNIQLEKLGVE 87

Query: 247 CRQIYYLHKYNHIFIKSIV*FNVYEVLD 164
           C   YYLH  N+I  K +  +N++E LD
Sbjct: 88  CIDFYYLHSLNYIAFKQLKEYNIFEFLD 115


>tr|B8I251|B8I251_CLOCE Heptaprenyl diphosphate synthase component I
           OS=Clostridium cellulolyticum H10 GN=Ccel_1525 PE=4 SV=1
          Length = 176

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -2

Query: 255 ELGAGRFTIFINIITYSLKALFDLMSMKCLMQSAFQGAPFIHAF 124
           +LG     I + +I +SL     ++ +KC++ S F G P I  F
Sbjct: 42  KLGLSNIIIIVALIFFSLSNTLAIVLVKCVLSSLFMGGPIIFTF 85


>tr|A7SCF3|A7SCF3_NEMVE Predicted protein OS=Nematostella vectensis
           GN=v1g168923 PE=4 SV=1
          Length = 359

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 18/59 (30%), Positives = 29/59 (49%)
 Frame = -1

Query: 397 LEDHNWVLPNGLHVKYFSILDNILDFLTKIACTYTVSTDQVHSSLSSRIGCRQIYYLHK 221
           L +H W L  G H +Y  IL +I++ L       ++    VH ++S    C+ +  LHK
Sbjct: 296 LFEHTWTLSRGQHGRYLHILADIMEKLAN-----SLIRPVVHHTVSLDDACKALQSLHK 349