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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913924
Clone id YMU001_000037_H04
Library
Length 302
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000037_H04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AAGAACGTTTTCTGCGCCTAACGAGCTGAGATTACGAGTTTGTTGTGCGTGGGCGAGGCG
TTTTCTCAACATGAAGCTTTGCGGAATGGTAGCTCCGGCAGCCCCTTGAAGCAGGGACCA
TGGATCCCGAGCAGACATTCTTGAGAGTGCATGCCCGATTATCGGGCATGCTAGCGCAGC
TTCTGAGCCCTAGACTACGAGGCTTCCTTGAACACCTCTGCCTGGTTGTCGCCATTCTTC
TTCTCGCCCTGTTGGCGGTGATGCATGTCAACTTTGTCTCTCAGGCTGGTTGTGCAAGTG
AG
■■Homology search results ■■ -
sp_hit_id Q6ZV70
Definition sp|Q6ZV70|LANC3_HUMAN LanC-like protein 3 OS=Homo sapiens
Align length 59
Score (bit) 29.6
E-value 4.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913924|Adiantum capillus-veneris mRNA, clone:
YMU001_000037_H04.
         (302 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6ZV70|LANC3_HUMAN LanC-like protein 3 OS=Homo sapiens GN=LAN...    30   4.9  
sp|Q2NA15|ISPE_ERYLH 4-diphosphocytidyl-2-C-methyl-D-erythritol ...    29   8.4  

>sp|Q6ZV70|LANC3_HUMAN LanC-like protein 3 OS=Homo sapiens GN=LANCL3
           PE=2 SV=2
          Length = 420

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 14/59 (23%), Positives = 24/59 (40%)
 Frame = -3

Query: 246 REEEWRQPGRGVQGSLVV*GSEAALACPIIGHALSRMSARDPWSLLQGAAGATIPQSFM 70
           R EEW +P    + + ++ G+       ++ HAL R     P    +       P SF+
Sbjct: 105 RAEEWGEPDADTRAAFLLGGAGVYAVATLVYHALGRSDYVQPLGKFRALCAVCAPVSFL 163


>sp|Q2NA15|ISPE_ERYLH 4-diphosphocytidyl-2-C-methyl-D-erythritol
           kinase OS=Erythrobacter litoralis (strain HTCC2594)
           GN=ispE PE=3 SV=1
          Length = 273

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 18/56 (32%), Positives = 21/56 (37%)
 Frame = -3

Query: 255 PTGREEEWRQPGRGVQGSLVV*GSEAALACPIIGHALSRMSARDPWSLLQGAAGAT 88
           PTG   E  + GR            A   CP I   L  + A DPW      +GAT
Sbjct: 191 PTGTAREIARKGRNDLRP------PAVAICPPIADVLQALEATDPWMCEMSGSGAT 240
tr_hit_id Q75GP2
Definition tr|Q75GP2|Q75GP2_ORYSJ Os03g0659900 protein OS=Oryza sativa subsp. japonica
Align length 61
Score (bit) 71.6
E-value 2.0e-11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913924|Adiantum capillus-veneris mRNA, clone:
YMU001_000037_H04.
         (302 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q75GP2|Q75GP2_ORYSJ Os03g0659900 protein OS=Oryza sativa subs...    72   2e-11
tr|B8ANL3|B8ANL3_ORYSI Putative uncharacterized protein OS=Oryza...    72   2e-11
tr|A3AL22|A3AL22_ORYSJ Putative uncharacterized protein OS=Oryza...    62   1e-08
tr|A9NW80|A9NW80_PICSI Putative uncharacterized protein OS=Picea...    60   5e-08
tr|Q8GWG6|Q8GWG6_ARATH Putative uncharacterized protein At1g6100...    57   3e-07
tr|A9NRS7|A9NRS7_PICSI Putative uncharacterized protein OS=Picea...    57   6e-07
tr|A7PYL4|A7PYL4_VITVI Chromosome chr12 scaffold_38, whole genom...    52   2e-05
tr|A5C4W2|A5C4W2_VITVI Putative uncharacterized protein OS=Vitis...    52   2e-05
tr|Q7XAE6|Q7XAE6_PETIN S3 self-incompatibility locus-linked poll...    51   3e-05
tr|A9NW23|A9NW23_PICSI Putative uncharacterized protein OS=Picea...    44   0.003
tr|Q9C953|Q9C953_ARATH Putative uncharacterized protein T7P1.14 ...    41   0.026
tr|Q5FT02|Q5FT02_GLUOX Transcriptional regluator LysR family OS=...    38   0.22 
tr|A9NM75|A9NM75_PICSI Putative uncharacterized protein OS=Picea...    37   0.37 
tr|B3PA46|B3PA46_DROER GG10959 OS=Drosophila erecta GN=GG10959 P...    37   0.48 
tr|Q3SVD6|Q3SVD6_NITWN Transcriptional regulatory protein, LysR ...    33   5.4  

>tr|Q75GP2|Q75GP2_ORYSJ Os03g0659900 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBb0065L20.21 PE=4 SV=1
          Length = 664

 Score = 71.6 bits (174), Expect = 2e-11
 Identities = 36/61 (59%), Positives = 41/61 (67%)
 Frame = +3

Query: 120 MDPEQTFLRVHARLSGMLAQLLSPRLRGFLEHXXXXXXXXXXXXXXXMHVNFVSQAGCAS 299
           MDPEQTFLRVHARLSGML+QLL+PR+R  LE+               MH NFV Q GC+S
Sbjct: 1   MDPEQTFLRVHARLSGMLSQLLTPRIRLALEYLYLAGAVALFCLLVVMHTNFVQQPGCSS 60

Query: 300 E 302
           E
Sbjct: 61  E 61


>tr|B8ANL3|B8ANL3_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_12877 PE=4 SV=1
          Length = 713

 Score = 71.6 bits (174), Expect = 2e-11
 Identities = 36/61 (59%), Positives = 41/61 (67%)
 Frame = +3

Query: 120 MDPEQTFLRVHARLSGMLAQLLSPRLRGFLEHXXXXXXXXXXXXXXXMHVNFVSQAGCAS 299
           MDPEQTFLRVHARLSGML+QLL+PR+R  LE+               MH NFV Q GC+S
Sbjct: 1   MDPEQTFLRVHARLSGMLSQLLTPRIRLALEYLYLAGAVALFCLLVVMHTNFVQQPGCSS 60

Query: 300 E 302
           E
Sbjct: 61  E 61


>tr|A3AL22|A3AL22_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_011494 PE=4 SV=1
          Length = 978

 Score = 62.4 bits (150), Expect = 1e-08
 Identities = 32/55 (58%), Positives = 36/55 (65%)
 Frame = +3

Query: 120 MDPEQTFLRVHARLSGMLAQLLSPRLRGFLEHXXXXXXXXXXXXXXXMHVNFVSQ 284
           MDPEQTFLRVHARLSGML+QLL+PR+R  LE+               MH NFV Q
Sbjct: 1   MDPEQTFLRVHARLSGMLSQLLTPRIRLALEYLYLAGAVALFCLLVVMHTNFVQQ 55


>tr|A9NW80|A9NW80_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 270

 Score = 60.1 bits (144), Expect = 5e-08
 Identities = 35/61 (57%), Positives = 37/61 (60%)
 Frame = +3

Query: 120 MDPEQTFLRVHARLSGMLAQLLSPRLRGFLEHXXXXXXXXXXXXXXXMHVNFVSQAGCAS 299
           MDP  TFLRVHARLSGMLAQLL PR R  L                 MHVNFV+QAG A+
Sbjct: 1   MDPHHTFLRVHARLSGMLAQLLMPRNRSSLR-----LAIVLLGVLTVMHVNFVAQAGYAN 55

Query: 300 E 302
           E
Sbjct: 56  E 56


>tr|Q8GWG6|Q8GWG6_ARATH Putative uncharacterized protein
           At1g61000/T7P1_14 OS=Arabidopsis thaliana
           GN=At1g61000/T7P1_14 PE=2 SV=1
          Length = 623

 Score = 57.4 bits (137), Expect = 3e-07
 Identities = 29/61 (47%), Positives = 36/61 (59%)
 Frame = +3

Query: 120 MDPEQTFLRVHARLSGMLAQLLSPRLRGFLEHXXXXXXXXXXXXXXXMHVNFVSQAGCAS 299
           MDPEQTF+RV  R S    Q+L+PR+RGFLE+               MH N+V Q GC+S
Sbjct: 1   MDPEQTFIRVQERFS----QILTPRIRGFLEYTYLFVAITLFCILVVMHANYVQQPGCSS 56

Query: 300 E 302
           E
Sbjct: 57  E 57


>tr|A9NRS7|A9NRS7_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 270

 Score = 56.6 bits (135), Expect = 6e-07
 Identities = 32/61 (52%), Positives = 35/61 (57%)
 Frame = +3

Query: 120 MDPEQTFLRVHARLSGMLAQLLSPRLRGFLEHXXXXXXXXXXXXXXXMHVNFVSQAGCAS 299
           MDP  TFLRVH R SGMLAQLL PR R  L                 MHVNF++QAG A+
Sbjct: 1   MDPHHTFLRVHVRFSGMLAQLLMPRNRSSLR-----LAIVLLGVLTVMHVNFIAQAGYAN 55

Query: 300 E 302
           E
Sbjct: 56  E 56


>tr|A7PYL4|A7PYL4_VITVI Chromosome chr12 scaffold_38, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00026485001
           PE=4 SV=1
          Length = 625

 Score = 51.6 bits (122), Expect = 2e-05
 Identities = 27/61 (44%), Positives = 34/61 (55%)
 Frame = +3

Query: 120 MDPEQTFLRVHARLSGMLAQLLSPRLRGFLEHXXXXXXXXXXXXXXXMHVNFVSQAGCAS 299
           MDPEQTF+RV  R S    Q+L+PR+R  LE+               MH N+V Q GC+S
Sbjct: 1   MDPEQTFIRVQERFS----QMLTPRVRASLEYIYLFVAITLFCILVVMHANYVQQPGCSS 56

Query: 300 E 302
           E
Sbjct: 57  E 57


>tr|A5C4W2|A5C4W2_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_036910 PE=4 SV=1
          Length = 673

 Score = 51.6 bits (122), Expect = 2e-05
 Identities = 27/61 (44%), Positives = 34/61 (55%)
 Frame = +3

Query: 120 MDPEQTFLRVHARLSGMLAQLLSPRLRGFLEHXXXXXXXXXXXXXXXMHVNFVSQAGCAS 299
           MDPEQTF+RV  R S    Q+L+PR+R  LE+               MH N+V Q GC+S
Sbjct: 1   MDPEQTFIRVQERFS----QMLTPRVRASLEYIYLFVAITLFCILVVMHANYVQQPGCSS 56

Query: 300 E 302
           E
Sbjct: 57  E 57


>tr|Q7XAE6|Q7XAE6_PETIN S3 self-incompatibility locus-linked pollen
           3.15 protein OS=Petunia integrifolia subsp. inflata
           GN=S3-3.15 PE=2 SV=1
          Length = 660

 Score = 50.8 bits (120), Expect = 3e-05
 Identities = 27/61 (44%), Positives = 34/61 (55%)
 Frame = +3

Query: 120 MDPEQTFLRVHARLSGMLAQLLSPRLRGFLEHXXXXXXXXXXXXXXXMHVNFVSQAGCAS 299
           MDPEQTF+RV  R     AQ+L+PR+R  LE+               MH N+V Q GC+S
Sbjct: 1   MDPEQTFIRVQERF----AQMLTPRIRVTLEYLYLFIAVTLFSILVVMHANYVQQPGCSS 56

Query: 300 E 302
           E
Sbjct: 57  E 57


>tr|A9NW23|A9NW23_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 204

 Score = 44.3 bits (103), Expect = 0.003
 Identities = 21/27 (77%), Positives = 23/27 (85%)
 Frame = +3

Query: 120 MDPEQTFLRVHARLSGMLAQLLSPRLR 200
           MDP+ TFLRVHARLSGML QLLS  +R
Sbjct: 1   MDPQHTFLRVHARLSGMLEQLLSHGIR 27