BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913927|Adiantum capillus-veneris mRNA, clone:
YMU001_000037_H08.
         (452 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q24212|STNB_DROME Protein stoned-B OS=Drosophila melanogaster...    30   4.8  
sp|Q9C0X8|RRP12_SCHPO Putative ribosomal RNA-processing protein ...    30   6.3  
sp|Q9RPY1|VIRB4_BRUSU Type IV secretion system protein virB4 OS=...    29   8.2  
sp|Q8YDZ4|VIRB4_BRUME Type IV secretion system protein virB4 OS=...    29   8.2  
sp|P0C525|VIRB4_BRUAB Type IV secretion system protein virB4 OS=...    29   8.2  
sp|Q2YIT8|VIRB4_BRUA2 Type IV secretion system protein virB4 OS=...    29   8.2  
sp|Q93459|MRPL_CAEEL Mrp family putative nucleotide-binding prot...    29   8.2  

>sp|Q24212|STNB_DROME Protein stoned-B OS=Drosophila melanogaster
            GN=stnB PE=1 SV=3
          Length = 1262

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -1

Query: 371  GFTKRLLGMVDCTPAQVDPMMPNC*PLWFYVFSLDLLLHVGN 246
            GFT R LG + C    V   +P C   W Y+F ++     G+
Sbjct: 1049 GFTSRKLGQIPCEDVSVRFPIPEC---WIYLFRVEKHFRYGS 1087


>sp|Q9C0X8|RRP12_SCHPO Putative ribosomal RNA-processing protein 12
           OS=Schizosaccharomyces pombe GN=SPAPB8E5.07c PE=2 SV=1
          Length = 1163

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
 Frame = -1

Query: 413 DKSKPITWRGASTYGFTKRLLGMVDCTPAQVDPMMPNC*PLWFYVFSLDLLLHVGNKVLL 234
           D S  + +    +  F   LL +   TP+Q    +  C   W ++ S D +  V  KV  
Sbjct: 588 DASSNLAFLTNMSSNFLSVLLNVFSSTPSQYRYPILKCIQTWIFISSNDTIHSVYKKVTD 647

Query: 233 ITPYRTH--AESTIIKLEGAASPINY 162
           + P   +  A S  I  +G +SP+ Y
Sbjct: 648 LLPDSLNDLAGSFNIAADGISSPMAY 673


>sp|Q9RPY1|VIRB4_BRUSU Type IV secretion system protein virB4
           OS=Brucella suis GN=virB4 PE=2 SV=2
          Length = 831

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +1

Query: 7   SMRASNRLGSPTARALTLISTPQNSSISLDYYWA 108
           + RA  R G+P  +ALTL+ TP      L+++++
Sbjct: 405 NFRAGKRDGNPWGQALTLLKTPSGQPAYLNFHYS 438


>sp|Q8YDZ4|VIRB4_BRUME Type IV secretion system protein virB4
           OS=Brucella melitensis GN=virB4 PE=3 SV=1
          Length = 831

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +1

Query: 7   SMRASNRLGSPTARALTLISTPQNSSISLDYYWA 108
           + RA  R G+P  +ALTL+ TP      L+++++
Sbjct: 405 NFRAGKRDGNPWGQALTLLKTPSGQPAYLNFHYS 438


>sp|P0C525|VIRB4_BRUAB Type IV secretion system protein virB4
           OS=Brucella abortus GN=virB4 PE=3 SV=1
          Length = 831

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +1

Query: 7   SMRASNRLGSPTARALTLISTPQNSSISLDYYWA 108
           + RA  R G+P  +ALTL+ TP      L+++++
Sbjct: 405 NFRAGKRDGNPWGQALTLLKTPSGQPAYLNFHYS 438


>sp|Q2YIT8|VIRB4_BRUA2 Type IV secretion system protein virB4
           OS=Brucella abortus (strain 2308) GN=virB4 PE=3 SV=1
          Length = 831

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +1

Query: 7   SMRASNRLGSPTARALTLISTPQNSSISLDYYWA 108
           + RA  R G+P  +ALTL+ TP      L+++++
Sbjct: 405 NFRAGKRDGNPWGQALTLLKTPSGQPAYLNFHYS 438


>sp|Q93459|MRPL_CAEEL Mrp family putative nucleotide-binding protein
           F10G8.6 OS=Caenorhabditis elegans GN=F10G8.6 PE=2 SV=2
          Length = 313

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -1

Query: 419 LGDKSKPITWRGASTYGFTKRLLGMVD 339
           LGDK+  + WRGA   G  K+ L  VD
Sbjct: 139 LGDKNDAVIWRGARKNGMIKQFLKDVD 165

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913927|Adiantum capillus-veneris mRNA, clone:
YMU001_000037_H08.
         (452 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|O55753|O55753_IRV6 149L OS=Chilo iridescent virus PE=4 SV=1         33   7.1  
tr|A1AQB8|A1AQB8_PELPD Cobyrinic acid a,c-diamide synthase OS=Pe...    33   9.3  

>tr|O55753|O55753_IRV6 149L OS=Chilo iridescent virus PE=4 SV=1
          Length = 666

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = -1

Query: 269 DLLLHVGNKVLLITPYRTHAESTIIKLEGAASPINYRTQ 153
           D+L+  G+KVL+  P +   E+  +K +G A PIN  T+
Sbjct: 253 DILIATGDKVLVYAPLKLTDEARRLKYQGLAKPINIVTE 291


>tr|A1AQB8|A1AQB8_PELPD Cobyrinic acid a,c-diamide synthase
           OS=Pelobacter propionicus (strain DSM 2379) GN=Ppro_1929
           PE=4 SV=1
          Length = 295

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 16/42 (38%), Positives = 26/42 (61%)
 Frame = -1

Query: 419 LGDKSKPITWRGASTYGFTKRLLGMVDCTPAQVDPMMPNC*P 294
           L D+S+ + WRG + +G  K LLG V  T  ++D ++ +C P
Sbjct: 122 LDDQSEALVWRGPAKHGVIKELLGSV--TWGELDYLIVDCPP 161