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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913932
Clone id YMU001_000038_A03
Library
Length 273
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000038_A03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GGAAGAATTCGCGGCCGCAGGAATTATTTGGTAATTCTCTAGAAGAACAATTAGTGGCTA
CAAAACTTGTACAAAATTTACAACAAGCGTGCTCAAGGTAAAGCACCAGGAATAAATAAT
CCTTTGCAAACTCAGCTGACACACTGGCACCCCACTCTCAATAACAGACTTTCCATGTAG
AACAAGGAAGATGTTACTAACCTCATTGACGTCTATTCAAGATCCCACGAGCAAAATATT
CTGCTATTACAGAAAACCCATCGTCTGAATTCC
■■Homology search results ■■ -
sp_hit_id Q91W86
Definition sp|Q91W86|VPS11_MOUSE Vacuolar protein sorting-associated protein 11 homolog OS=Mus musculus
Align length 19
Score (bit) 31.6
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913932|Adiantum capillus-veneris mRNA, clone:
YMU001_000038_A03.
         (248 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q91W86|VPS11_MOUSE Vacuolar protein sorting-associated protei...    32   1.3  
sp|Q9H270|VPS11_HUMAN Vacuolar protein sorting-associated protei...    32   1.3  
sp|Q54YP4|VPS11_DICDI Vacuolar protein sorting-associated protei...    32   1.3  
sp|Q8JGT4|UNC5B_XENLA Netrin receptor UNC5B OS=Xenopus laevis GN...    30   2.9  
sp|P27715|UNC13_CAEEL Phorbol ester/diacylglycerol-binding prote...    30   2.9  
sp|Q7LZ61|RVVX_DABRU Coagulation factor X-activating enzyme heav...    30   3.7  
sp|Q9UBI9|HDC_HUMAN Headcase protein homolog OS=Homo sapiens GN=...    29   8.3  

>sp|Q91W86|VPS11_MOUSE Vacuolar protein sorting-associated protein
           11 homolog OS=Mus musculus GN=Vps11 PE=2 SV=2
          Length = 941

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 12/19 (63%), Positives = 16/19 (84%)
 Frame = -3

Query: 243 SDDGFSVIAEYFARGILNR 187
           S+D FSVIA+YF RG+ N+
Sbjct: 891 SNDSFSVIADYFGRGVFNK 909


>sp|Q9H270|VPS11_HUMAN Vacuolar protein sorting-associated protein
           11 homolog OS=Homo sapiens GN=VPS11 PE=1 SV=1
          Length = 941

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 12/19 (63%), Positives = 16/19 (84%)
 Frame = -3

Query: 243 SDDGFSVIAEYFARGILNR 187
           S+D FSVIA+YF RG+ N+
Sbjct: 891 SNDSFSVIADYFGRGVFNK 909


>sp|Q54YP4|VPS11_DICDI Vacuolar protein sorting-associated protein
           11 homolog OS=Dictyostelium discoideum GN=vps11 PE=3
           SV=1
          Length = 952

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 12/19 (63%), Positives = 16/19 (84%)
 Frame = -3

Query: 246 NSDDGFSVIAEYFARGILN 190
           +S DGF+ ++EYF RGILN
Sbjct: 934 SSPDGFTTVSEYFGRGILN 952


>sp|Q8JGT4|UNC5B_XENLA Netrin receptor UNC5B OS=Xenopus laevis
           GN=unc5b PE=2 SV=1
          Length = 943

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
 Frame = +3

Query: 48  KIYNKRAQGKAPGI---NNPLQTQLTHWHPTLNNRLSM*NK 161
           K+YN    G +PGI   NN L T+ T  +P+ NN ++  NK
Sbjct: 486 KVYNSSTVGSSPGIHDGNNLLGTKPTGTYPSDNNIMNARNK 526


>sp|P27715|UNC13_CAEEL Phorbol ester/diacylglycerol-binding protein
            unc-13 OS=Caenorhabditis elegans GN=unc-13 PE=1 SV=4
          Length = 2155

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -3

Query: 153  TWKVCY*EWGASVSAEFAKDYLFLVLY--LEHACCKFCTSFV 34
            +WKVC+ E G  ++ EFA  Y    +Y  + H  C  CT ++
Sbjct: 1327 SWKVCFQETGQEIAEEFAMRYGIESIYQAMTHFAC-LCTRYM 1367


>sp|Q7LZ61|RVVX_DABRU Coagulation factor X-activating enzyme heavy
           chain OS=Daboia russelli siamensis PE=1 SV=2
          Length = 619

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = -3

Query: 120 SVSAEFAKDYLFLVLYLEHACCKFCTSFVATNCSSRELPN 1
           S SA+F K ++ LV+ ++H+  K C S  ATN    E+ N
Sbjct: 191 STSAQFNKIFIELVIIVDHSMAKKCNS-TATNTKIYEIVN 229


>sp|Q9UBI9|HDC_HUMAN Headcase protein homolog OS=Homo sapiens
           GN=HECA PE=1 SV=1
          Length = 543

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = -3

Query: 168 HLPCSTWK--VCY*EWGASVSAEF 103
           H PCSTW    C+ EW +S+  +F
Sbjct: 122 HCPCSTWMHLQCFYEWESSILVQF 145
tr_hit_id A9SKG6
Definition tr|A9SKG6|A9SKG6_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 20
Score (bit) 40.8
E-value 0.035
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913932|Adiantum capillus-veneris mRNA, clone:
YMU001_000038_A03.
         (248 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SKG6|A9SKG6_PHYPA Predicted protein OS=Physcomitrella paten...    41   0.035
tr|Q2BBA4|Q2BBA4_9BACI Predicted ATP-dependent endonuclease of t...    36   0.85 
tr|Q4G0A0|Q4G0A0_DANRE Zgc:112329 OS=Danio rerio GN=zgc:112329 P...    34   4.2  
tr|Q5XGW5|Q5XGW5_XENLA LOC495262 protein OS=Xenopus laevis GN=vp...    33   5.5  
tr|Q4SL98|Q4SL98_TETNG Chromosome 7 SCAF14557, whole genome shot...    33   5.5  
tr|Q0PN15|Q0PN15_ORYLA Vps11 OS=Oryzias latipes GN=vps11 PE=2 SV=1     33   5.5  
tr|B2GUQ1|B2GUQ1_XENTR Vps11 protein OS=Xenopus tropicalis GN=vp...    33   5.5  
tr|A7Q339|A7Q339_VITVI Chromosome chr12 scaffold_47, whole genom...    33   7.2  
tr|Q8QRU6|Q8QRU6_9BETA US13 OS=Panine herpesvirus 2 PE=4 SV=1          33   9.4  

>tr|A9SKG6|A9SKG6_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_185907 PE=4 SV=1
          Length = 966

 Score = 40.8 bits (94), Expect = 0.035
 Identities = 18/20 (90%), Positives = 19/20 (95%)
 Frame = -3

Query: 246 NSDDGFSVIAEYFARGILNR 187
           NSDDGFSVIAEYF RGILN+
Sbjct: 928 NSDDGFSVIAEYFGRGILNQ 947


>tr|Q2BBA4|Q2BBA4_9BACI Predicted ATP-dependent endonuclease of the
           OLD family protein OS=Bacillus sp. NRRL B-14911
           GN=B14911_16940 PE=4 SV=1
          Length = 603

 Score = 36.2 bits (82), Expect = 0.85
 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
 Frame = +3

Query: 45  YKIYNKRAQGKAPGINNPLQTQLTHWHPTLNNRLSM*NKEDVTNLID-----VYSRSHEQ 209
           +K+Y K+ QG+  G+N PL   +      L+  L+   KE + +L D     V + SH  
Sbjct: 274 FKMYMKKYQGEDKGVNRPLIIAIEEPELYLHPHLARVFKETLYSLADEGFFQVLATSHSP 333

Query: 210 NILLLQKTHR 239
           N + L K HR
Sbjct: 334 NFIDLSKPHR 343


>tr|Q4G0A0|Q4G0A0_DANRE Zgc:112329 OS=Danio rerio GN=zgc:112329 PE=2
           SV=1
          Length = 927

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 13/19 (68%), Positives = 17/19 (89%)
 Frame = -3

Query: 243 SDDGFSVIAEYFARGILNR 187
           S+DGFSVIA+YF RG+ N+
Sbjct: 876 SNDGFSVIADYFGRGVFNK 894


>tr|Q5XGW5|Q5XGW5_XENLA LOC495262 protein OS=Xenopus laevis GN=vps11
           PE=2 SV=1
          Length = 914

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 12/20 (60%), Positives = 17/20 (85%)
 Frame = -3

Query: 246 NSDDGFSVIAEYFARGILNR 187
           +S DGFSV+A+YF RG+ N+
Sbjct: 863 HSSDGFSVVADYFGRGVFNK 882


>tr|Q4SL98|Q4SL98_TETNG Chromosome 7 SCAF14557, whole genome shotgun
           sequence. (Fragment) OS=Tetraodon nigroviridis
           GN=GSTENG00016335001 PE=4 SV=1
          Length = 846

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 12/20 (60%), Positives = 17/20 (85%)
 Frame = -3

Query: 246 NSDDGFSVIAEYFARGILNR 187
           +S DGFSV+A+YF RG+ N+
Sbjct: 796 SSSDGFSVVADYFGRGVFNK 815


>tr|Q0PN15|Q0PN15_ORYLA Vps11 OS=Oryzias latipes GN=vps11 PE=2 SV=1
          Length = 922

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 12/19 (63%), Positives = 17/19 (89%)
 Frame = -3

Query: 243 SDDGFSVIAEYFARGILNR 187
           S+DGFSV+A+YF RG+ N+
Sbjct: 872 SNDGFSVVADYFGRGVFNK 890


>tr|B2GUQ1|B2GUQ1_XENTR Vps11 protein OS=Xenopus tropicalis GN=vps11
           PE=2 SV=1
          Length = 914

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 12/20 (60%), Positives = 17/20 (85%)
 Frame = -3

Query: 246 NSDDGFSVIAEYFARGILNR 187
           +S DGFSV+A+YF RG+ N+
Sbjct: 863 HSSDGFSVVADYFGRGVFNK 882


>tr|A7Q339|A7Q339_VITVI Chromosome chr12 scaffold_47, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00029140001
           PE=4 SV=1
          Length = 912

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 14/24 (58%), Positives = 19/24 (79%)
 Frame = -3

Query: 246 NSDDGFSVIAEYFARGILNRRQ*G 175
           +S DGFSVIAEYF +GI+++   G
Sbjct: 873 SSKDGFSVIAEYFGKGIISKTSNG 896


>tr|Q8QRU6|Q8QRU6_9BETA US13 OS=Panine herpesvirus 2 PE=4 SV=1
          Length = 262

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = -1

Query: 152 HGKSVIESGVPVCQLSLQRIIYSWCFTLSTLVVNFVQVL 36
           H  S++ +G  V  LS+  +IY+WC  L  ++ ++V V+
Sbjct: 86  HPNSLVIAGCYVALLSVSTLIYTWCSELPAILTDYVLVI 124