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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913933
Clone id YMU001_000038_A04
Library
Length 372
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000038_A04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AGAAGTGAACATACATGGCAATTTCTCCTCACAGAGAAATCTGCCCCGGAATGAATGATT
GATCTTATGAGACCTATTAGCTTTTGCAGTGCATGACATTCTTGGTCTGGAGGGAAAAGA
GTTCCAAAGTATATACCACTTCACCATCAGCAGTGTAGTGGAAGACAGAAGGATTACTGG
GTTACCGCCCTTTCCAGGCTTGGAGTAGAAAGATTCACCATCATAGGTGAATTTTTTTGT
ACATGTTTATTGAAAGCTATAGCTATAGGCCATACAACTGAATTTATCGGTTAAGGTGTA
TCTCTTGGGTGTGTAAATATTTGAGGTCAATTATCAAGGGGACCTAAGTAAGGAGATGAA
AATTAAGTGACA
■■Homology search results ■■ -
sp_hit_id P98160
Definition sp|P98160|PGBM_HUMAN Basement membrane-specific heparan sulfate proteoglycan core protein OS=Homo sapiens
Align length 105
Score (bit) 32.7
E-value 0.57
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913933|Adiantum capillus-veneris mRNA, clone:
YMU001_000038_A04.
         (372 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P98160|PGBM_HUMAN Basement membrane-specific heparan sulfate ...    33   0.57 
sp|P44289|Y1680_HAEIN Uncharacterized protein HI1680 OS=Haemophi...    30   4.9  
sp|P55972|IF2_HELPY Translation initiation factor IF-2 OS=Helico...    30   4.9  
sp|Q9ZM46|IF2_HELPJ Translation initiation factor IF-2 OS=Helico...    30   4.9  
sp|Q1CUA6|IF2_HELPH Translation initiation factor IF-2 OS=Helico...    30   4.9  
sp|Q0U7S9|DHH1_PHANO ATP-dependent RNA helicase DHH1 OS=Phaeosph...    29   6.4  
sp|Q05793|PGBM_MOUSE Basement membrane-specific heparan sulfate ...    29   8.3  

>sp|P98160|PGBM_HUMAN Basement membrane-specific heparan sulfate
           proteoglycan core protein OS=Homo sapiens GN=HSPG2 PE=1
           SV=3
          Length = 4391

 Score = 32.7 bits (73), Expect = 0.57
 Identities = 21/105 (20%), Positives = 42/105 (40%), Gaps = 4/105 (3%)
 Frame = -1

Query: 330 LTSNIYTPKRYTLTDKFSCMAYSYSFQ*TCTKKFTYDGESFYSKPGKGGNPVILLSSTTL 151
           +++N+  P  +   ++  C   S  F     +  T   ES  +  G+      +      
Sbjct: 376 VSTNMCIPASFHCDEESDCPDRSDEFGCMPPQVVTPPRESIQASRGQTVTFTCVAIGVPT 435

Query: 150 LMVKWYILWNSFPSRPRMSCTAKANRS----HKINHSFRGRFLCE 28
            ++ W + W   PS PR++ T++  R       +  S +G + CE
Sbjct: 436 PIINWRLNWGHIPSHPRVTVTSEGGRGTLIIRDVKESDQGAYTCE 480


>sp|P44289|Y1680_HAEIN Uncharacterized protein HI1680 OS=Haemophilus
           influenzae GN=HI1680 PE=3 SV=1
          Length = 718

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -1

Query: 183 NPVILLSSTTLLMVKWYILWNSFPSRPRMSCTAKA 79
           NPV++L  T L  V   I++  FP+RP     AKA
Sbjct: 134 NPVMILCGTLLYSVVTLIVYLFFPNRPVQESVAKA 168


>sp|P55972|IF2_HELPY Translation initiation factor IF-2
           OS=Helicobacter pylori GN=infB PE=3 SV=1
          Length = 944

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 14/35 (40%), Positives = 24/35 (68%), Gaps = 4/35 (11%)
 Frame = -1

Query: 114 PSRPRMSCTAKANRSHKINHS----FRGRFLCEEK 22
           PS+P+ + TAK N+SHKI+ S    F+G  + +++
Sbjct: 264 PSKPKATPTAKNNKSHKIDFSDARDFKGNDIYDDE 298


>sp|Q9ZM46|IF2_HELPJ Translation initiation factor IF-2
           OS=Helicobacter pylori J99 GN=infB PE=3 SV=1
          Length = 949

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 14/35 (40%), Positives = 24/35 (68%), Gaps = 4/35 (11%)
 Frame = -1

Query: 114 PSRPRMSCTAKANRSHKINHS----FRGRFLCEEK 22
           PS+P+ + TAK N+SHKI+ S    F+G  + +++
Sbjct: 269 PSKPKATPTAKNNKSHKIDFSDVRDFKGNDIYDDE 303


>sp|Q1CUA6|IF2_HELPH Translation initiation factor IF-2
           OS=Helicobacter pylori (strain HPAG1) GN=infB PE=3 SV=1
          Length = 944

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 14/35 (40%), Positives = 24/35 (68%), Gaps = 4/35 (11%)
 Frame = -1

Query: 114 PSRPRMSCTAKANRSHKINHS----FRGRFLCEEK 22
           PS+P+ + TAK N+SHKI+ S    F+G  + +++
Sbjct: 264 PSKPKATPTAKNNKSHKIDFSDARDFKGNDIYDDE 298


>sp|Q0U7S9|DHH1_PHANO ATP-dependent RNA helicase DHH1
           OS=Phaeosphaeria nodorum GN=DHH1 PE=3 SV=1
          Length = 522

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -2

Query: 311 HPRDTP*PINSVVWPIAIAFNKHVQKNSPMMVNLSTPSLERAVTQ 177
           HP+D    + S  +PI +   K    NSP  +NL      R +TQ
Sbjct: 219 HPKDRQVMLFSATFPIVVKTFKDKHMNSPYEINLMDELTLRGITQ 263


>sp|Q05793|PGBM_MOUSE Basement membrane-specific heparan sulfate
           proteoglycan core protein OS=Mus musculus GN=Hspg2 PE=1
           SV=1
          Length = 3707

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 18/105 (17%), Positives = 42/105 (40%), Gaps = 4/105 (3%)
 Frame = -1

Query: 330 LTSNIYTPKRYTLTDKFSCMAYSYSFQ*TCTKKFTYDGESFYSKPGKGGNPVILLSSTTL 151
           +++N   P  +   ++  C   S  F     +  T   +S  +  G+      + +    
Sbjct: 376 VSTNRCIPASFHCDEESDCPDRSDEFGCMPPQVVTPPQQSIQASRGQTVTFTCVATGVPT 435

Query: 150 LMVKWYILWNSFPSRPRMSCTAKANRS----HKINHSFRGRFLCE 28
            ++ W + W   P+ PR++ T++  R       +  + +G + CE
Sbjct: 436 PIINWRLNWGHIPAHPRVTMTSEGGRGTLIIRDVKEADQGAYTCE 480
tr_hit_id A7PYD6
Definition tr|A7PYD6|A7PYD6_VITVI Chromosome chr15 scaffold_37, whole genome shotgun sequence OS=Vitis vinifera
Align length 38
Score (bit) 53.5
E-value 5.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913933|Adiantum capillus-veneris mRNA, clone:
YMU001_000038_A04.
         (372 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7PYD6|A7PYD6_VITVI Chromosome chr15 scaffold_37, whole genom...    54   5e-06
tr|Q8LMV1|Q8LMV1_ORYSJ Putative uncharacterized protein OSJNBa00...    53   7e-06
tr|B8BG17|B8BG17_ORYSI Putative uncharacterized protein OS=Oryza...    53   7e-06
tr|Q5NWK0|Q5NWK0_AZOSE Putative uncharacterized protein OS=Azoar...    50   4e-05
tr|A8IIR5|A8IIR5_AZOC5 Putative uncharacterized protein OS=Azorh...    50   6e-05
tr|A1K7U0|A1K7U0_AZOSB Putative uncharacterized protein OS=Azoar...    49   1e-04
tr|A7C3J4|A7C3J4_9GAMM Putative uncharacterized protein OS=Beggi...    49   1e-04
tr|Q60C87|Q60C87_METCA Putative uncharacterized protein OS=Methy...    49   2e-04
tr|O23673|O23673_ARATH T7I23.2 protein (Putative uncharacterized...    49   2e-04
tr|A4YP94|A4YP94_BRASO Putative uncharacterized protein OS=Brady...    48   3e-04
tr|A9RNQ9|A9RNQ9_PHYPA Predicted protein (Fragment) OS=Physcomit...    48   3e-04
tr|A5EDW1|A5EDW1_BRASB Putative uncharacterized protein OS=Brady...    47   4e-04
tr|Q47G60|Q47G60_DECAR Putative uncharacterized protein OS=Dechl...    46   8e-04
tr|B8ELT7|B8ELT7_METSI Nitroreductase OS=Methylocella silvestris...    45   0.001
tr|Q56WX7|Q56WX7_ARATH Putative uncharacterized protein At1g0202...    45   0.002
tr|A7IBL2|A7IBL2_XANP2 Putative uncharacterized protein OS=Xanth...    45   0.002
tr|O67067|O67067_AQUAE Putative uncharacterized protein OS=Aquif...    44   0.004
tr|B3DX21|B3DX21_METI4 Nitroreductase OS=Methylacidiphilum infer...    43   0.007
tr|B5ER57|B5ER57_ACIF5 Putative uncharacterized protein OS=Acidi...    43   0.009
tr|B7JA80|B7JA80_THIFE Nitroreductase, putative OS=Acidithiobaci...    43   0.009
tr|Q9HX73|Q9HX73_PSEAE Putative uncharacterized protein OS=Pseud...    41   0.026
tr|Q2WAQ2|Q2WAQ2_MAGMM Nitroreductase OS=Magnetospirillum magnet...    41   0.026
tr|Q02SB2|Q02SB2_PSEAB Putative uncharacterized protein OS=Pseud...    41   0.026
tr|A1SX74|A1SX74_PSYIN Putative uncharacterized protein OS=Psych...    41   0.034
tr|Q4J073|Q4J073_AZOVI Nitroreductase family protein OS=Azotobac...    41   0.034
tr|B7VAI0|B7VAI0_PSEAE Putative uncharacterized protein OS=Pseud...    40   0.044
tr|A3LF41|A3LF41_PSEAE Putative uncharacterized protein OS=Pseud...    40   0.044
tr|A3KYJ7|A3KYJ7_PSEAE Putative uncharacterized protein OS=Pseud...    40   0.044
tr|B2IES9|B2IES9_BEII9 Rhodanese domain protein OS=Beijerinckia ...    40   0.058
tr|B1K9H3|B1K9H3_BURCC Putative uncharacterized protein OS=Burkh...    40   0.058

>tr|A7PYD6|A7PYD6_VITVI Chromosome chr15 scaffold_37, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00026398001
           PE=4 SV=1
          Length = 611

 Score = 53.5 bits (127), Expect = 5e-06
 Identities = 22/38 (57%), Positives = 28/38 (73%)
 Frame = +2

Query: 86  AVHDILGLEGKEFQSIYHFTISSVVEDRRITGLPPFPG 199
           AVH++LGL G  FQS+YHFT+   V D+RI  LP +PG
Sbjct: 569 AVHELLGLRGSSFQSLYHFTVGGPVLDKRIMSLPAYPG 606


>tr|Q8LMV1|Q8LMV1_ORYSJ Putative uncharacterized protein
           OSJNBa0040E17.29 (Putative uncharacterized protein)
           (Nitroreductase family protein, putative) OS=Oryza
           sativa subsp. japonica GN=OSJNBa0040E17.29 PE=4 SV=1
          Length = 587

 Score = 53.1 bits (126), Expect = 7e-06
 Identities = 22/38 (57%), Positives = 30/38 (78%)
 Frame = +2

Query: 86  AVHDILGLEGKEFQSIYHFTISSVVEDRRITGLPPFPG 199
           AVH++LGL+  EFQS+YHFT+ + V D+RI  LP +PG
Sbjct: 545 AVHEVLGLKDLEFQSLYHFTVGAPVLDKRIMSLPAYPG 582


>tr|B8BG17|B8BG17_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_32957 PE=4 SV=1
          Length = 612

 Score = 53.1 bits (126), Expect = 7e-06
 Identities = 22/38 (57%), Positives = 30/38 (78%)
 Frame = +2

Query: 86  AVHDILGLEGKEFQSIYHFTISSVVEDRRITGLPPFPG 199
           AVH++LGL+  EFQS+YHFT+ + V D+RI  LP +PG
Sbjct: 570 AVHEVLGLKDLEFQSLYHFTVGAPVLDKRIMSLPAYPG 607


>tr|Q5NWK0|Q5NWK0_AZOSE Putative uncharacterized protein OS=Azoarcus
           sp. (strain EbN1) GN=AZOSEC00370 PE=4 SV=1
          Length = 527

 Score = 50.4 bits (119), Expect = 4e-05
 Identities = 19/38 (50%), Positives = 29/38 (76%)
 Frame = +2

Query: 86  AVHDILGLEGKEFQSIYHFTISSVVEDRRITGLPPFPG 199
           ++H++LGL G E+QS+YHFT+    ED R++ LPP+ G
Sbjct: 487 SMHELLGLAGSEWQSLYHFTVGVPTEDARLSSLPPYSG 524


>tr|A8IIR5|A8IIR5_AZOC5 Putative uncharacterized protein
           OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM
           5975 / ORS 571) GN=AZC_3440 PE=4 SV=1
          Length = 553

 Score = 50.1 bits (118), Expect = 6e-05
 Identities = 21/46 (45%), Positives = 31/46 (67%)
 Frame = +2

Query: 86  AVHDILGLEGKEFQSIYHFTISSVVEDRRITGLPPFPGLE*KDSPS 223
           A+H++LGLEG+ FQS+Y FT+   + D RI  LP +PG     +P+
Sbjct: 503 ALHELLGLEGERFQSLYQFTVGRPLHDGRILSLPAYPGRRPPPAPA 548


>tr|A1K7U0|A1K7U0_AZOSB Putative uncharacterized protein OS=Azoarcus
           sp. (strain BH72) GN=azo2278 PE=4 SV=1
          Length = 584

 Score = 49.3 bits (116), Expect = 1e-04
 Identities = 19/39 (48%), Positives = 28/39 (71%)
 Frame = +2

Query: 89  VHDILGLEGKEFQSIYHFTISSVVEDRRITGLPPFPGLE 205
           VH++LGL+G+ FQ++YHFT+   V+D RI   P +P  E
Sbjct: 542 VHELLGLDGEAFQTLYHFTVGKAVDDPRIESTPGYPARE 580


>tr|A7C3J4|A7C3J4_9GAMM Putative uncharacterized protein
           OS=Beggiatoa sp. PS GN=BGP_3028 PE=4 SV=1
          Length = 335

 Score = 48.9 bits (115), Expect = 1e-04
 Identities = 21/42 (50%), Positives = 30/42 (71%)
 Frame = +2

Query: 86  AVHDILGLEGKEFQSIYHFTISSVVEDRRITGLPPFPGLE*K 211
           AVH +LGL    +QS+YHFTI + ++D+R+  LPP+  LE K
Sbjct: 293 AVHHLLGLNDTRYQSLYHFTIGTPLDDKRLQTLPPYAHLENK 334


>tr|Q60C87|Q60C87_METCA Putative uncharacterized protein
           OS=Methylococcus capsulatus GN=MCA0222 PE=4 SV=1
          Length = 529

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 20/37 (54%), Positives = 27/37 (72%)
 Frame = +2

Query: 86  AVHDILGLEGKEFQSIYHFTISSVVEDRRITGLPPFP 196
           A H++LGL GK FQS+YHFT+   ++D RIT   P+P
Sbjct: 489 AFHELLGLSGKAFQSLYHFTVGRPLDDPRITTEAPYP 525


>tr|O23673|O23673_ARATH T7I23.2 protein (Putative uncharacterized
           protein At1g02020) OS=Arabidopsis thaliana GN=At1g02020
           PE=2 SV=1
          Length = 642

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 19/37 (51%), Positives = 26/37 (70%)
 Frame = +2

Query: 89  VHDILGLEGKEFQSIYHFTISSVVEDRRITGLPPFPG 199
           VH++LG+    FQS+YHFT+   V D+RI  LP +PG
Sbjct: 600 VHEVLGINDSSFQSLYHFTVGGPVVDKRIMTLPAYPG 636


>tr|A4YP94|A4YP94_BRASO Putative uncharacterized protein
           OS=Bradyrhizobium sp. (strain ORS278) GN=BRADO1849 PE=4
           SV=1
          Length = 547

 Score = 47.8 bits (112), Expect = 3e-04
 Identities = 19/38 (50%), Positives = 28/38 (73%)
 Frame = +2

Query: 86  AVHDILGLEGKEFQSIYHFTISSVVEDRRITGLPPFPG 199
           +VH++LG+ G +FQS+YHFT+   + D RIT L  +PG
Sbjct: 500 SVHEMLGVAGDQFQSLYHFTVGRPLTDNRITTLQAYPG 537