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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913935
Clone id YMU001_000038_A09
Library
Length 427
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000038_A09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ACATGTGTCATGGGAATAGCCTTTGGGCCCAAGGAGAGAAAGCTGAGTCTTGGGTCAGAA
TTACTCCGTGAAAGGCAGAGATGGGTGGGATGCTCAGCGATGCATTCAGCCAACAAGCAG
GCGCGCGATATGACATGTATCGGGGGTCTTGCACTGGTTGTGAAGGGGGCATTGGTGAGA
TCCGGTCGCAACCTGTGGACGAAATCCAGTTGAGGTAGATCTGGGATATGTCATTGAGAG
CGTATGTGGGCAATTGATCGGCATTGCAGTATGTGGAGCTTGTACAAGAAGAGGGGCCGT
GACGAGAGCAGCCCACATCCTCAATTGTGCTGAGACAGCTAGAAGAGCTGCTGGACGAGG
AATCGGGGCTGGTTGGAGCGACGCCGGAGAGGCAGGGGACAGAGGAGCAGCTGGTGTAAG
GGCGAAC
■■Homology search results ■■ -
sp_hit_id Q95K74
Definition sp|Q95K74|CL053_MACFA Uncharacterized protein C12orf53 homolog OS=Macaca fascicularis
Align length 54
Score (bit) 33.5
E-value 0.37
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913935|Adiantum capillus-veneris mRNA, clone:
YMU001_000038_A09.
         (427 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q95K74|CL053_MACFA Uncharacterized protein C12orf53 homolog O...    33   0.37 
sp|Q8IYJ0|CL053_HUMAN Uncharacterized protein C12orf53 OS=Homo s...    33   0.37 
sp|P40556|YIA6_YEAST Uncharacterized mitochondrial carrier YIL00...    33   0.47 
sp|P55268|LAMB2_HUMAN Laminin subunit beta-2 OS=Homo sapiens GN=...    32   0.82 
sp|Q60HH4|ASAH1_MACFA Acid ceramidase OS=Macaca fascicularis GN=...    31   2.4  
sp|Q8IN94|OSA_DROME Trithorax group protein osa OS=Drosophila me...    30   3.1  
sp|Q8W4N3|UBP2_ARATH Ubiquitin carboxyl-terminal hydrolase 2 OS=...    30   4.0  
sp|O05975|Y785_RICPR Uncharacterized protein RP785 OS=Rickettsia...    30   5.3  
sp|Q10172|PAN1_SCHPO Actin cytoskeleton-regulatory complex prote...    30   5.3  
sp|Q03610|YN81_CAEEL Uncharacterized protein ZC84.1 OS=Caenorhab...    29   7.0  
sp|Q4ZQI4|SYA_PSEU2 Alanyl-tRNA synthetase OS=Pseudomonas syring...    29   8.8  
sp|P12684|HMDH2_YEAST 3-hydroxy-3-methylglutaryl-coenzyme A redu...    29   8.8  
sp|Q8CGW4|SOX30_MOUSE Transcription factor SOX-30 OS=Mus musculu...    29   9.1  
sp|Q0VG99|MESP2_HUMAN Mesoderm posterior protein 2 OS=Homo sapie...    29   9.1  
sp|Q9WV54|ASAH1_MOUSE Acid ceramidase OS=Mus musculus GN=Asah1 P...    29   9.1  

>sp|Q95K74|CL053_MACFA Uncharacterized protein C12orf53 homolog
           OS=Macaca fascicularis GN=QccE-10858 PE=2 SV=1
          Length = 282

 Score = 33.5 bits (75), Expect = 0.37
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = -2

Query: 321 RMWAALVTAPLLVQAPHTAMPINCPHTLSMTYPRSTSTGFRPQVATGSHQCPLH 160
           RMW AL+ + LL   P   +P+  P   S + PR+     RP  A G    P H
Sbjct: 4   RMWPALLLSHLLPLWPLLLLPLPPPAQGSSSSPRTPPAPARPPCARGGPSAPRH 57


>sp|Q8IYJ0|CL053_HUMAN Uncharacterized protein C12orf53 OS=Homo
           sapiens GN=C12orf53 PE=2 SV=1
          Length = 282

 Score = 33.5 bits (75), Expect = 0.37
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = -2

Query: 321 RMWAALVTAPLLVQAPHTAMPINCPHTLSMTYPRSTSTGFRPQVATGSHQCPLH 160
           RMW AL+ + LL   P   +P+  P   S + PR+     RP  A G    P H
Sbjct: 4   RMWPALLLSHLLPLWPLLLLPLPPPAQGSSSSPRTPPAPARPPCARGGPSAPRH 57


>sp|P40556|YIA6_YEAST Uncharacterized mitochondrial carrier YIL006W
           OS=Saccharomyces cerevisiae GN=YIL006W PE=1 SV=1
          Length = 373

 Score = 33.1 bits (74), Expect = 0.47
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -3

Query: 215 PQLDFVHRLRPDLTNAPFTTSARPPIHVISRACLLAECIAEHPTH 81
           PQ DFV +    +T    +T+   PI V+    +L   + EHPTH
Sbjct: 172 PQFDFVAQSCAAITAGAASTTLTNPIWVVKTRLMLQSNLGEHPTH 216


>sp|P55268|LAMB2_HUMAN Laminin subunit beta-2 OS=Homo sapiens GN=LAMB2
            PE=1 SV=2
          Length = 1798

 Score = 32.3 bits (72), Expect = 0.82
 Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 7/56 (12%)
 Frame = -2

Query: 276  PHTAMPINCPHTLSMTYPRSTSTGFRPQVATGS-HQCPLH------NQCKTPDTCH 130
            PHT   + C H     +      GF  Q A  S H+C  +       QC +PD CH
Sbjct: 1002 PHTGQCLRCLHHTEGPHCAHCKPGFHGQAARQSCHRCTCNLLGTNPQQCPSPDQCH 1057


>sp|Q60HH4|ASAH1_MACFA Acid ceramidase OS=Macaca fascicularis
           GN=ASAH1 PE=2 SV=1
          Length = 395

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -1

Query: 184 RISPMPPSQPVQDPRYMSYRAPACWLNASLSIPPISAFHGVIL 56
           R S  PPS P       +YR PA W   +L +PP   +H +++
Sbjct: 32  RKSTYPPSGP-------TYRGPAPWYTINLDLPPYKRWHELMV 67


>sp|Q8IN94|OSA_DROME Trithorax group protein osa OS=Drosophila
            melanogaster GN=osa PE=1 SV=1
          Length = 2716

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 26/85 (30%), Positives = 32/85 (37%), Gaps = 2/85 (2%)
 Frame = -1

Query: 259  DQLPTYALNDISQIYLNWISSTGCDRISPMPPSQPVQDPRYMSYRAPACWLNASL--SIP 86
            D  P    N   QIY  W S T   R            P+Y S  AP  W  A    + P
Sbjct: 1490 DSQPYPGYNARPQIYGAWQSGTQQYR------------PQYPSSPAPQNWGGAPPRGAAP 1537

Query: 85   PISAFHGVILTQDSAFSPWAQRLFP 11
            P  A HG  + Q +  + W Q  +P
Sbjct: 1538 PPGAPHGPPIQQPAGVAQWDQHRYP 1562


>sp|Q8W4N3|UBP2_ARATH Ubiquitin carboxyl-terminal hydrolase 2
           OS=Arabidopsis thaliana GN=UBP2 PE=1 SV=2
          Length = 961

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +3

Query: 78  EMGGMLSDAFSQQAGARYDMYRGSCTGCEGGIGEIRS--QPVDEIQL 212
           ++  M SD     +G   +  + SC GC+ GIGE  S   P DE +L
Sbjct: 567 DVQAMQSDECPATSGISAEFSQASCIGCDPGIGESSSSVNPWDEEEL 613


>sp|O05975|Y785_RICPR Uncharacterized protein RP785 OS=Rickettsia
            prowazekii GN=RP785 PE=4 SV=2
          Length = 1169

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 27/106 (25%), Positives = 43/106 (40%), Gaps = 2/106 (1%)
 Frame = -1

Query: 334  LSTIEDVGCSRHGPSSCTSSTYCNADQLPT--YALNDISQIYLNWISSTGCDRISPMPPS 161
            L TIE+   +  GP    +   CN +++P+  Y  ND +   +  +S    DRI P P  
Sbjct: 805  LCTIEE---TVPGPRKGITIYTCNINKIPSKCYTNNDNANTPICVLSRDYKDRIKPEPSI 861

Query: 160  QPVQDPRYMSYRAPACWLNASLSIPPISAFHGVILTQDSAFSPWAQ 23
             P+  P   S      +     + PP   +H    T+D     W +
Sbjct: 862  GPILVPVDPSKYYTVTYTKGDENTPPEPTYHAE--TEDVRDKTWQE 905


>sp|Q10172|PAN1_SCHPO Actin cytoskeleton-regulatory complex protein
            pan1 OS=Schizosaccharomyces pombe GN=pan1 PE=1 SV=1
          Length = 1794

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -1

Query: 184  RISPMPPSQPVQDPRYMSYRAPACWLNASLSIPP 83
            R SP  P +PVQ P+ ++  APA  L  S S  P
Sbjct: 1557 RSSPYAPQEPVQKPQAINNIAPATNLGTSQSFSP 1590


>sp|Q03610|YN81_CAEEL Uncharacterized protein ZC84.1
           OS=Caenorhabditis elegans GN=ZC84.1 PE=4 SV=5
          Length = 1556

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
 Frame = -2

Query: 276 PHTAMPINCPHTLSMTYPRSTSTGFRPQV-------ATGSHQCP 166
           P++ MPINC   LS + P   +  F P +       AT S  CP
Sbjct: 805 PNSQMPINCNEALSNSCPSGYACTFNPLINNHVCCGATDSGVCP 848
tr_hit_id Q2VWS0
Definition tr|Q2VWS0|Q2VWS0_FUNHE Estrogen receptor BetaB OS=Fundulus heteroclitus
Align length 77
Score (bit) 34.3
E-value 3.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913935|Adiantum capillus-veneris mRNA, clone:
YMU001_000038_A09.
         (427 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q2VWS0|Q2VWS0_FUNHE Estrogen receptor BetaB OS=Fundulus heter...    34   3.2  
tr|A8XJN0|A8XJN0_CAEBR Putative uncharacterized protein OS=Caeno...    34   3.2  
tr|Q96AS2|Q96AS2_HUMAN ASAH1 protein OS=Homo sapiens PE=2 SV=1         34   3.2  
tr|Q59FR9|Q59FR9_HUMAN Fibroblast growth factor 11 variant (Frag...    34   3.2  
tr|B3KRI6|B3KRI6_HUMAN cDNA FLJ34337 fis, clone FEBRA2009437 OS=...    34   3.2  
tr|Q4K3J2|Q4K3J2_PSEF5 3-beta hydroxysteroid dehydrogenase/isome...    34   4.2  
tr|B3KPF7|B3KPF7_HUMAN cDNA FLJ31733 fis, clone NT2RI2006943 OS=...    33   5.5  
tr|A8K0T3|A8K0T3_HUMAN cDNA FLJ38535 fis, clone HCHON2001161 OS=...    33   5.5  
tr|B5VKT1|B5VKT1_YEAS6 YIL006Wp-like protein OS=Saccharomyces ce...    33   7.0  
tr|B3LTL5|B3LTL5_YEAS1 Putative uncharacterized protein OS=Sacch...    33   7.0  
tr|A6ZVR2|A6ZVR2_YEAS7 NAD+ transporter OS=Saccharomyces cerevis...    33   7.0  
tr|A7VKK3|A7VKK3_GAMAF Estrogen receptor beta2 OS=Gambusia affin...    33   9.4  
tr|Q17978|Q17978_CAEEL Mutator protein 14 OS=Caenorhabditis eleg...    33   9.4  

>tr|Q2VWS0|Q2VWS0_FUNHE Estrogen receptor BetaB OS=Fundulus
           heteroclitus PE=2 SV=1
          Length = 672

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
 Frame = -1

Query: 307 SRHGPSSCTSSTYCNADQ----LPTYALNDISQIYLNWISSTGCDRISPMPPSQPVQDPR 140
           S+  PSS +S TYC+  Q     P Y   D+ Q +    S+      S  PP +P +D  
Sbjct: 553 SQTTPSSPSSDTYCDGQQCQAPAPFYLQADLDQTF----STNSSTDNSIAPPEEPTEDHI 608

Query: 139 YMSYRAPACWLNASLSI 89
            + +  P   L++ LSI
Sbjct: 609 MVRHLQPGGLLSSPLSI 625


>tr|A8XJN0|A8XJN0_CAEBR Putative uncharacterized protein
           OS=Caenorhabditis briggsae GN=CBG14271 PE=4 SV=1
          Length = 705

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
 Frame = -1

Query: 283 TSSTYCNADQLPTYALNDISQIYLNWISSTGCDRISP--MPPSQPVQDPRYMSYRAPACW 110
           T+  YC   Q+P      I   + N+      + ++P  +PP  P Q+ +   Y APA +
Sbjct: 256 TTGNYCTVPQIPPPVYTIIPP-HQNYAQQAPVNTVAPPMVPPQLPSQNYQPTGYMAPASY 314

Query: 109 LNASLSIPPIS 77
           +  + S PP S
Sbjct: 315 VQQTTSAPPPS 325


>tr|Q96AS2|Q96AS2_HUMAN ASAH1 protein OS=Homo sapiens PE=2 SV=1
          Length = 389

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 20/58 (34%), Positives = 26/58 (44%)
 Frame = -1

Query: 184 RISPMPPSQPVQDPRYMSYRAPACWLNASLSIPPISAFHGVILTQDSAFSPWAQRLFP 11
           R S  PPS P   P  + YR    W   +L +PP   +H ++L  D A  P     FP
Sbjct: 48  RKSTYPPSGPTVFPAVIRYRGAVPWYTINLDLPPYKRWHELML--DKAPVPGLLGNFP 103


>tr|Q59FR9|Q59FR9_HUMAN Fibroblast growth factor 11 variant
           (Fragment) OS=Homo sapiens PE=2 SV=1
          Length = 347

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 31/109 (28%), Positives = 47/109 (43%), Gaps = 6/109 (5%)
 Frame = -1

Query: 424 RPYTSCSSVPCLSGVAPTSPDXXXXXXXSCLSTIEDVG-----CSRHGPSSCTSS-TYCN 263
           +P +SCSS P  +   PT               +E  G     C  H    C+SS T   
Sbjct: 169 KPRSSCSS-PLPNTAVPTPIVLRLRAGSRDSFNLERRGPGVSRCLGHPKDFCSSSRTPPP 227

Query: 262 ADQLPTYALNDISQIYLNWISSTGCDRISPMPPSQPVQDPRYMSYRAPA 116
           + +LP ++ +    +  +W SS G + ISP  P   +Q PR  +  AP+
Sbjct: 228 SPRLPRFSRSSTPGLGSSWSSSAGSEPISPALPRVSLQLPRQPALYAPS 276


>tr|B3KRI6|B3KRI6_HUMAN cDNA FLJ34337 fis, clone FEBRA2009437
           OS=Homo sapiens PE=2 SV=1
          Length = 276

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 19/54 (35%), Positives = 26/54 (48%)
 Frame = -2

Query: 321 RMWAALVTAPLLVQAPHTAMPINCPHTLSMTYPRSTSTGFRPQVATGSHQCPLH 160
           RMW AL+ + LL   P  ++P+  P   S + PR+     RP  A G    P H
Sbjct: 4   RMWPALLLSHLLPLWPLLSLPLPPPAQGSSSSPRTPPAPARPPCARGGPSAPRH 57


>tr|Q4K3J2|Q4K3J2_PSEF5 3-beta hydroxysteroid
           dehydrogenase/isomerase family protein, putative
           OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477)
           GN=PFL_6133 PE=4 SV=1
          Length = 335

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 25/86 (29%), Positives = 34/86 (39%)
 Frame = -1

Query: 268 CNADQLPTYALNDISQIYLNWISSTGCDRISPMPPSQPVQDPRYMSYRAPACWLNASLSI 89
           C  +++P         +Y N+    G     P+PP  PV D  Y   +A A  L A   +
Sbjct: 105 CGKNRIPRLVHISTPSLYFNFSDRLGIREDQPLPP--PVND--YARSKAQAETLLADAKL 160

Query: 88  PPISAFHGVILTQDSAFSPWAQRLFP 11
           P       VIL   + F PW   L P
Sbjct: 161 PEC-----VILRPRAVFGPWDATLMP 181


>tr|B3KPF7|B3KPF7_HUMAN cDNA FLJ31733 fis, clone NT2RI2006943
           OS=Homo sapiens PE=2 SV=1
          Length = 282

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = -2

Query: 321 RMWAALVTAPLLVQAPHTAMPINCPHTLSMTYPRSTSTGFRPQVATGSHQCPLH 160
           RMW AL+ + LL   P   +P+  P   S + PR+     RP  A G    P H
Sbjct: 4   RMWPALLLSHLLPLWPLLLLPLPPPAQGSSSSPRTPPVPTRPPCARGGPSAPRH 57


>tr|A8K0T3|A8K0T3_HUMAN cDNA FLJ38535 fis, clone HCHON2001161
           OS=Homo sapiens GN=C12orf53 PE=2 SV=1
          Length = 282

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = -2

Query: 321 RMWAALVTAPLLVQAPHTAMPINCPHTLSMTYPRSTSTGFRPQVATGSHQCPLH 160
           RMW AL+ + LL   P   +P+  P   S + PR+     RP  A G    P H
Sbjct: 4   RMWPALLLSHLLPLWPLLLLPLPPPAQGSSSSPRTPPAPARPPCARGGPSAPRH 57


>tr|B5VKT1|B5VKT1_YEAS6 YIL006Wp-like protein OS=Saccharomyces
           cerevisiae (strain AWRI1631) GN=AWRI1631_91440 PE=4 SV=1
          Length = 373

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -3

Query: 215 PQLDFVHRLRPDLTNAPFTTSARPPIHVISRACLLAECIAEHPTH 81
           PQ DFV +    +T    +T+   PI V+    +L   + EHPTH
Sbjct: 172 PQFDFVAQSCAAITAGAASTTLTNPIWVVKTRLMLQSNLGEHPTH 216


>tr|B3LTL5|B3LTL5_YEAS1 Putative uncharacterized protein
           OS=Saccharomyces cerevisiae (strain RM11-1a)
           GN=SCRG_05185 PE=4 SV=1
          Length = 373

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -3

Query: 215 PQLDFVHRLRPDLTNAPFTTSARPPIHVISRACLLAECIAEHPTH 81
           PQ DFV +    +T    +T+   PI V+    +L   + EHPTH
Sbjct: 172 PQFDFVAQSCAAITAGAASTTLTNPIWVVKTRLMLQSNLGEHPTH 216