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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913944
Clone id YMU001_000038_B06
Library
Length 543
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000038_B06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CAGCGGTCCTCAGAATAAACAGCAGCCCAGCAATGGGCTGTCTGCAGGCGGGAACTCAGG
CGGCTCTCTCGTCACAGTTGCTTTTCAAATACTAGTGGACCATGTTCCCACAGCTCGGTT
GTCACTTGGCTCGGTAGCAACTGTCAACAAGCTCATATGCAACACAGTCATTCGCATAAA
ATGTGCTCTTGCATGTGATGCATAGCTCATGGCTTTGCACAATCCTTCTTCATGTCATGC
TTAGGAGTGCTGTCAGCTTCTACCTTTAATCAAAATCAAACGACTACCAAAGTACACCGA
CACTTCCACCAAAGTACACCGCCACTTTCTAACCGAAGGCTAAATCCACATACCTGCATT
CAAGGCCCTCTCTAACCAAGTTGGACACCCTTAGATCTGCATTGTAGTTTCCCTTTCAAG
GTCCTCTTTAACCAAAAAAGCAGAACCCTCTGGTCTCTCAGTGTAGCTCCCCTAAAAGGT
AGTCGTAGACTAAAGTCATTACCACACATCCTCATATCTGCATCACAAGCTCTCTCTCCC
CCC
■■Homology search results ■■ -
sp_hit_id Q6ZAR0
Definition sp|Q6ZAR0|ROC1_ORYSJ Homeobox-leucine zipper protein ROC1 OS=Oryza sativa subsp. japonica
Align length 59
Score (bit) 57.0
E-value 6.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913944|Adiantum capillus-veneris mRNA, clone:
YMU001_000038_B06.
         (543 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6ZAR0|ROC1_ORYSJ Homeobox-leucine zipper protein ROC1 OS=Ory...    57   6e-08
sp|A3BPF2|ROC7_ORYSJ Homeobox-leucine zipper protein ROC7 OS=Ory...    56   1e-07
sp|A2YR02|ROC7_ORYSI Homeobox-leucine zipper protein ROC7 OS=Ory...    56   1e-07
sp|Q0J9X2|ROC2_ORYSJ Homeobox-leucine zipper protein ROC2 OS=Ory...    56   1e-07
sp|Q94C37|HDG2_ARATH Homeobox-leucine zipper protein HDG2 OS=Ara...    56   1e-07
sp|Q93V99|PDF2_ARATH Homeobox-leucine zipper protein PROTODERMAL...    55   2e-07
sp|Q8RWU4|ATML1_ARATH Homeobox-leucine zipper protein MERISTEM L...    55   2e-07
sp|Q9M2E8|HDG1_ARATH Homeobox-leucine zipper protein HDG1 OS=Ara...    44   4e-04
sp|Q0WV12|ANL2_ARATH Homeobox-leucine zipper protein ANTHOCYANIN...    44   5e-04
sp|Q69T58|ROC8_ORYSJ Homeobox-leucine zipper protein ROC8 OS=Ory...    44   7e-04
sp|Q6EPF0|ROC5_ORYSJ Homeobox-leucine zipper protein ROC5 OS=Ory...    44   7e-04
sp|Q9FX31|HDG11_ARATH Homeobox-leucine zipper protein HDG11 OS=A...    44   7e-04
sp|Q7Y0V7|ROC6_ORYSJ Homeobox-leucine zipper protein ROC6 OS=Ory...    43   0.001
sp|Q9LTK3|HDG7_ARATH Homeobox-leucine zipper protein HDG7 OS=Ara...    42   0.003
sp|Q9ZV65|HDG3_ARATH Homeobox-leucine zipper protein HDG3 OS=Ara...    41   0.004
sp|Q7Y0V9|ROC4_ORYSJ Homeobox-leucine zipper protein ROC4 OS=Ory...    38   0.036
sp|Q336P2|ROC3_ORYSJ Homeobox-leucine zipper protein ROC3 OS=Ory...    37   0.062
sp|A2ZAI7|ROC3_ORYSI Homeobox-leucine zipper protein ROC3 OS=Ory...    37   0.062
sp|Q9FJS2|HDG5_ARATH Homeobox-leucine zipper protein HDG5 OS=Ara...    37   0.081
sp|Q8L7H4|HDG4_ARATH Homeobox-leucine zipper protein HDG4 OS=Ara...    36   0.11 
sp|Q9LMT8|HDG12_ARATH Homeobox-leucine zipper protein HDG12 OS=A...    36   0.14 
sp|Q9FVI6|FWA_ARATH Homeobox-leucine zipper protein HDG6 OS=Arab...    32   1.5  
sp|Q9Z138|ROR2_MOUSE Tyrosine-protein kinase transmembrane recep...    32   2.6  
sp|Q09818|YAC4_SCHPO Putative general negative regulator of tran...    31   3.4  
sp|P79331|ATS2_BOVIN A disintegrin and metalloproteinase with th...    31   4.4  
sp|Q9FFI0|HDG9_ARATH Homeobox-leucine zipper protein HDG9 OS=Ara...    31   4.5  
sp|O31087|XERC_SERMA Tyrosine recombinase xerC OS=Serratia marce...    30   5.8  
sp|Q01974|ROR2_HUMAN Tyrosine-protein kinase transmembrane recep...    30   7.6  
sp|Q1R153|Y191_CHRSD UPF0343 protein Csal_0191 OS=Chromohalobact...    30   9.9  

>sp|Q6ZAR0|ROC1_ORYSJ Homeobox-leucine zipper protein ROC1 OS=Oryza
           sativa subsp. japonica GN=ROC1 PE=2 SV=1
          Length = 784

 Score = 57.0 bits (136), Expect = 6e-08
 Identities = 33/59 (55%), Positives = 35/59 (59%)
 Frame = +2

Query: 5   GPQNKQQPXXXXXXXXXXXXXXVTVAFQILVDHVPTARLSLGSVATVNKLICNTVIRIK 181
           GP    Q               +TVAFQILVD VPTA+LSLGSVATVN LI  TV RIK
Sbjct: 716 GPSGNAQAAVGENGSGSGGGSLLTVAFQILVDSVPTAKLSLGSVATVNSLIACTVERIK 774


>sp|A3BPF2|ROC7_ORYSJ Homeobox-leucine zipper protein ROC7 OS=Oryza
           sativa subsp. japonica GN=ROC7 PE=2 SV=1
          Length = 749

 Score = 56.2 bits (134), Expect = 1e-07
 Identities = 30/37 (81%), Positives = 32/37 (86%)
 Frame = +2

Query: 71  VTVAFQILVDHVPTARLSLGSVATVNKLICNTVIRIK 181
           +TVAFQILVD VPTA+LSLGSVATVN LI  TV RIK
Sbjct: 698 LTVAFQILVDSVPTAKLSLGSVATVNSLIACTVERIK 734


>sp|A2YR02|ROC7_ORYSI Homeobox-leucine zipper protein ROC7 OS=Oryza
           sativa subsp. indica GN=ROC7 PE=3 SV=1
          Length = 749

 Score = 56.2 bits (134), Expect = 1e-07
 Identities = 30/37 (81%), Positives = 32/37 (86%)
 Frame = +2

Query: 71  VTVAFQILVDHVPTARLSLGSVATVNKLICNTVIRIK 181
           +TVAFQILVD VPTA+LSLGSVATVN LI  TV RIK
Sbjct: 698 LTVAFQILVDSVPTAKLSLGSVATVNSLIACTVERIK 734


>sp|Q0J9X2|ROC2_ORYSJ Homeobox-leucine zipper protein ROC2 OS=Oryza
           sativa subsp. japonica GN=ROC2 PE=2 SV=1
          Length = 784

 Score = 56.2 bits (134), Expect = 1e-07
 Identities = 30/37 (81%), Positives = 32/37 (86%)
 Frame = +2

Query: 71  VTVAFQILVDHVPTARLSLGSVATVNKLICNTVIRIK 181
           +TVAFQILVD VPTA+LSLGSVATVN LI  TV RIK
Sbjct: 738 LTVAFQILVDSVPTAKLSLGSVATVNSLIACTVERIK 774


>sp|Q94C37|HDG2_ARATH Homeobox-leucine zipper protein HDG2
           OS=Arabidopsis thaliana GN=HDG2 PE=2 SV=1
          Length = 721

 Score = 56.2 bits (134), Expect = 1e-07
 Identities = 30/37 (81%), Positives = 32/37 (86%)
 Frame = +2

Query: 71  VTVAFQILVDHVPTARLSLGSVATVNKLICNTVIRIK 181
           +TVAFQILVD VPTA+LSLGSVATVN LI  TV RIK
Sbjct: 677 LTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIK 713


>sp|Q93V99|PDF2_ARATH Homeobox-leucine zipper protein PROTODERMAL
           FACTOR 2 OS=Arabidopsis thaliana GN=PDF2 PE=2 SV=1
          Length = 743

 Score = 55.1 bits (131), Expect = 2e-07
 Identities = 30/37 (81%), Positives = 32/37 (86%)
 Frame = +2

Query: 71  VTVAFQILVDHVPTARLSLGSVATVNKLICNTVIRIK 181
           +TVAFQILVD VPTA+LSLGSVATVN LI  TV RIK
Sbjct: 696 LTVAFQILVDSVPTAKLSLGSVATVNSLIKCTVERIK 732


>sp|Q8RWU4|ATML1_ARATH Homeobox-leucine zipper protein MERISTEM L1
           OS=Arabidopsis thaliana GN=ATML1 PE=2 SV=1
          Length = 762

 Score = 55.1 bits (131), Expect = 2e-07
 Identities = 30/37 (81%), Positives = 32/37 (86%)
 Frame = +2

Query: 71  VTVAFQILVDHVPTARLSLGSVATVNKLICNTVIRIK 181
           +TVAFQILVD VPTA+LSLGSVATVN LI  TV RIK
Sbjct: 718 LTVAFQILVDSVPTAKLSLGSVATVNSLIKCTVERIK 754


>sp|Q9M2E8|HDG1_ARATH Homeobox-leucine zipper protein HDG1
           OS=Arabidopsis thaliana GN=HDG1 PE=2 SV=1
          Length = 808

 Score = 44.3 bits (103), Expect = 4e-04
 Identities = 23/37 (62%), Positives = 30/37 (81%)
 Frame = +2

Query: 71  VTVAFQILVDHVPTARLSLGSVATVNKLICNTVIRIK 181
           +TVAFQILV+ +PTA+L++ SV TVN LI  TV +IK
Sbjct: 764 LTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIK 800


>sp|Q0WV12|ANL2_ARATH Homeobox-leucine zipper protein
           ANTHOCYANINLESS 2 OS=Arabidopsis thaliana GN=ANL2 PE=2
           SV=1
          Length = 802

 Score = 43.9 bits (102), Expect = 5e-04
 Identities = 22/37 (59%), Positives = 31/37 (83%)
 Frame = +2

Query: 71  VTVAFQILVDHVPTARLSLGSVATVNKLICNTVIRIK 181
           +TVAFQILV+++PTA+L++ SV TVN LI  TV +I+
Sbjct: 759 LTVAFQILVNNLPTAKLTVESVETVNNLISCTVQKIR 795


>sp|Q69T58|ROC8_ORYSJ Homeobox-leucine zipper protein ROC8 OS=Oryza
           sativa subsp. japonica GN=ROC8 PE=2 SV=2
          Length = 710

 Score = 43.5 bits (101), Expect = 7e-04
 Identities = 23/37 (62%), Positives = 29/37 (78%)
 Frame = +2

Query: 71  VTVAFQILVDHVPTARLSLGSVATVNKLICNTVIRIK 181
           VTVAFQILV  +P+++L+  SVATVN LI  TV +IK
Sbjct: 662 VTVAFQILVSSLPSSKLNAESVATVNGLITTTVEQIK 698
tr_hit_id B8A225
Definition tr|B8A225|B8A225_MAIZE Putative uncharacterized protein OS=Zea mays
Align length 37
Score (bit) 57.4
E-value 5.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913944|Adiantum capillus-veneris mRNA, clone:
YMU001_000038_B06.
         (543 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8A225|B8A225_MAIZE Putative uncharacterized protein OS=Zea m...    57   5e-07
tr|B7ZWZ0|B7ZWZ0_MAIZE Putative uncharacterized protein OS=Zea m...    57   5e-07
tr|B8BBE5|B8BBE5_ORYSI Putative uncharacterized protein OS=Oryza...    57   6e-07
tr|A3BQA7|A3BQA7_ORYSJ Putative uncharacterized protein OS=Oryza...    57   6e-07
tr|Q8W0T5|Q8W0T5_SORBI OCL5 protein OS=Sorghum bicolor GN=S250_1...    56   1e-06
tr|Q00RL2|Q00RL2_ORYSA OSIGBa0117N13.5 protein OS=Oryza sativa G...    56   1e-06
tr|B8BAL1|B8BAL1_ORYSI Putative uncharacterized protein OS=Oryza...    56   1e-06
tr|B8AUT5|B8AUT5_ORYSI Putative uncharacterized protein OS=Oryza...    56   1e-06
tr|B7ZX75|B7ZX75_MAIZE Putative uncharacterized protein OS=Zea m...    56   1e-06
tr|B6UAR0|B6UAR0_MAIZE Putative uncharacterized protein OS=Zea m...    56   1e-06
tr|B4FYA9|B4FYA9_MAIZE Putative uncharacterized protein OS=Zea m...    56   1e-06
tr|B3H6Y4|B3H6Y4_ARATH Uncharacterized protein At1g05230.3 OS=Ar...    56   1e-06
tr|A7PXH2|A7PXH2_VITVI Chromosome chr12 scaffold_36, whole genom...    56   1e-06
tr|A5C0J7|A5C0J7_VITVI Putative uncharacterized protein OS=Vitis...    56   1e-06
tr|A3AXM5|A3AXM5_ORYSJ Putative uncharacterized protein OS=Oryza...    56   1e-06
tr|Q9FR59|Q9FR59_PICAB Homeobox 1 OS=Picea abies GN=HB1 PE=2 SV=1      56   1e-06
tr|Q40988|Q40988_9ASPA Homeobox protein OS=Phalaenopsis sp. SM91...    56   1e-06
tr|Q9LEE6|Q9LEE6_MAIZE OCL5 protein OS=Zea mays GN=ocl5 PE=2 SV=1      55   3e-06
tr|A7QUM2|A7QUM2_VITVI Chromosome chr10 scaffold_179, whole geno...    54   7e-06
tr|A5C6G2|A5C6G2_VITVI Putative uncharacterized protein OS=Vitis...    54   7e-06
tr|Q66Q67|Q66Q67_GOSHI Homeodomain protein HOX3 OS=Gossypium hir...    46   0.001
tr|B6SRL8|B6SRL8_MAIZE Putative uncharacterized protein OS=Zea m...    45   0.002
tr|A7QJZ6|A7QJZ6_VITVI Chromosome undetermined scaffold_109, who...    45   0.002
tr|A5BQ38|A5BQ38_VITVI Putative uncharacterized protein OS=Vitis...    45   0.002
tr|Q8S555|Q8S555_PICAB Homeodomain protein HB2 OS=Picea abies PE...    44   0.004
tr|Q0H742|Q0H742_BRANA Baby boom interacting protein 2 (Fragment...    44   0.004
tr|A7PXZ1|A7PXZ1_VITVI Chromosome chr15 scaffold_37, whole genom...    44   0.004
tr|A5BH09|A5BH09_VITVI Putative uncharacterized protein OS=Vitis...    44   0.004
tr|B8AGG2|B8AGG2_ORYSI Putative uncharacterized protein OS=Oryza...    44   0.007
tr|A3B9H6|A3B9H6_ORYSJ Putative uncharacterized protein OS=Oryza...    44   0.007

>tr|B8A225|B8A225_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 298

 Score = 57.4 bits (137), Expect = 5e-07
 Identities = 30/37 (81%), Positives = 32/37 (86%)
 Frame = +2

Query: 71  VTVAFQILVDHVPTARLSLGSVATVNKLICNTVIRIK 181
           +TVAFQILVD VPTA+LSLGSVATVN LI  TV RIK
Sbjct: 251 LTVAFQILVDSVPTAKLSLGSVATVNSLIARTVERIK 287


>tr|B7ZWZ0|B7ZWZ0_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 672

 Score = 57.4 bits (137), Expect = 5e-07
 Identities = 30/37 (81%), Positives = 32/37 (86%)
 Frame = +2

Query: 71  VTVAFQILVDHVPTARLSLGSVATVNKLICNTVIRIK 181
           +TVAFQILVD VPTA+LSLGSVATVN LI  TV RIK
Sbjct: 625 LTVAFQILVDSVPTAKLSLGSVATVNSLIARTVERIK 661


>tr|B8BBE5|B8BBE5_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_28071 PE=4 SV=1
          Length = 765

 Score = 57.0 bits (136), Expect = 6e-07
 Identities = 33/59 (55%), Positives = 35/59 (59%)
 Frame = +2

Query: 5   GPQNKQQPXXXXXXXXXXXXXXVTVAFQILVDHVPTARLSLGSVATVNKLICNTVIRIK 181
           GP    Q               +TVAFQILVD VPTA+LSLGSVATVN LI  TV RIK
Sbjct: 697 GPSGNAQAAVGENGSGSGGGSLLTVAFQILVDSVPTAKLSLGSVATVNSLIACTVERIK 755


>tr|A3BQA7|A3BQA7_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_025229 PE=4 SV=1
          Length = 610

 Score = 57.0 bits (136), Expect = 6e-07
 Identities = 33/59 (55%), Positives = 35/59 (59%)
 Frame = +2

Query: 5   GPQNKQQPXXXXXXXXXXXXXXVTVAFQILVDHVPTARLSLGSVATVNKLICNTVIRIK 181
           GP    Q               +TVAFQILVD VPTA+LSLGSVATVN LI  TV RIK
Sbjct: 542 GPSGNAQAAVGENGSGSGGGSLLTVAFQILVDSVPTAKLSLGSVATVNSLIACTVERIK 600


>tr|Q8W0T5|Q8W0T5_SORBI OCL5 protein OS=Sorghum bicolor
           GN=S250_18C08.9 PE=3 SV=1
          Length = 803

 Score = 56.2 bits (134), Expect = 1e-06
 Identities = 30/37 (81%), Positives = 32/37 (86%)
 Frame = +2

Query: 71  VTVAFQILVDHVPTARLSLGSVATVNKLICNTVIRIK 181
           +TVAFQILVD VPTA+LSLGSVATVN LI  TV RIK
Sbjct: 751 LTVAFQILVDSVPTAKLSLGSVATVNSLIACTVERIK 787


>tr|Q00RL2|Q00RL2_ORYSA OSIGBa0117N13.5 protein OS=Oryza sativa
           GN=OSIGBa0117N13.5 PE=3 SV=1
          Length = 781

 Score = 56.2 bits (134), Expect = 1e-06
 Identities = 30/37 (81%), Positives = 32/37 (86%)
 Frame = +2

Query: 71  VTVAFQILVDHVPTARLSLGSVATVNKLICNTVIRIK 181
           +TVAFQILVD VPTA+LSLGSVATVN LI  TV RIK
Sbjct: 735 LTVAFQILVDSVPTAKLSLGSVATVNSLIACTVERIK 771


>tr|B8BAL1|B8BAL1_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_27729 PE=4 SV=1
          Length = 785

 Score = 56.2 bits (134), Expect = 1e-06
 Identities = 30/37 (81%), Positives = 32/37 (86%)
 Frame = +2

Query: 71  VTVAFQILVDHVPTARLSLGSVATVNKLICNTVIRIK 181
           +TVAFQILVD VPTA+LSLGSVATVN LI  TV RIK
Sbjct: 734 LTVAFQILVDSVPTAKLSLGSVATVNSLIACTVERIK 770


>tr|B8AUT5|B8AUT5_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_17520 PE=4 SV=1
          Length = 784

 Score = 56.2 bits (134), Expect = 1e-06
 Identities = 30/37 (81%), Positives = 32/37 (86%)
 Frame = +2

Query: 71  VTVAFQILVDHVPTARLSLGSVATVNKLICNTVIRIK 181
           +TVAFQILVD VPTA+LSLGSVATVN LI  TV RIK
Sbjct: 738 LTVAFQILVDSVPTAKLSLGSVATVNSLIACTVERIK 774


>tr|B7ZX75|B7ZX75_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 802

 Score = 56.2 bits (134), Expect = 1e-06
 Identities = 30/37 (81%), Positives = 32/37 (86%)
 Frame = +2

Query: 71  VTVAFQILVDHVPTARLSLGSVATVNKLICNTVIRIK 181
           +TVAFQILVD VPTA+LSLGSVATVN LI  TV RIK
Sbjct: 755 LTVAFQILVDSVPTAKLSLGSVATVNSLIACTVERIK 791


>tr|B6UAR0|B6UAR0_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 73

 Score = 56.2 bits (134), Expect = 1e-06
 Identities = 30/37 (81%), Positives = 32/37 (86%)
 Frame = +2

Query: 71  VTVAFQILVDHVPTARLSLGSVATVNKLICNTVIRIK 181
           +TVAFQILVD VPTA+LSLGSVATVN LI  TV RIK
Sbjct: 26  LTVAFQILVDSVPTAKLSLGSVATVNSLIACTVERIK 62