BP913954 |
Clone id |
YMU001_000038_C04 |
Library |
YMU01 |
Length |
413 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000038_C04. |
Accession |
BP913954 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
AATGTAATGTGTGGCTGGAAAGAGGTGAAGTAAAAAAGGGAAAAGGGGCGACCCTTTATG GGAGGAGTTTTTTTGTTAAAGGAGAAAGAGTGCGCTGGGCAACGAGCATTCATTGAAAGG CCCCAAAGCAAGCTACTCTAGCCGGATTTTGGCCGTGTTTCTTGTGTCGTCTTCCTCTAT TCTTCAGCCTTCTCATTTTTTGTGCAAGTTTGCTGGGCTGTGTGTATGTGTGAGCCCTTA GGATTGATTGTGTGTGTACAAAGAGAGAAAGAGAGTGTGAGTGCAGGAGAGACCACGAAG GAGATTGTGCGGGCTGGGATGTAAAAGCTGTGCGTTTGTGAACGGGTTTGTACTTCGGAG TGTGTGGTCGAGGTATTGGCGAAATTTTTTGTGATTAGGTGTGTATTTCCAAG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9UJV3 |
Definition |
sp|Q9UJV3|TRIM1_HUMAN Midline-2 OS=Homo sapiens |
Align length |
35 |
Score (bit) |
31.6 |
E-value |
1.3 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP913954|Adiantum capillus-veneris mRNA, clone: YMU001_000038_C04. (413 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q9UJV3|TRIM1_HUMAN Midline-2 OS=Homo sapiens GN=MID2 PE=1 SV=2 32 1.3 sp|Q9I048|DUSA_PSEAE tRNA-dihydrouridine synthase A OS=Pseudomon... 31 1.7 sp|P82458|TRI18_RAT Midline-1 OS=Rattus norvegicus GN=Mid1 PE=2 ... 30 3.8 sp|P82457|TRI18_MUSSP Midline-1 OS=Mus spretus GN=Mid1 PE=2 SV=1 30 3.8 sp|O70583|TRI18_MOUSE Midline-1 OS=Mus musculus GN=Mid1 PE=1 SV=1 30 3.8 sp|O15344|TRI18_HUMAN Midline-1 OS=Homo sapiens GN=MID1 PE=1 SV=1 30 3.8 sp|Q2PPJ7|AS250_HUMAN 250 kDa substrate of Akt OS=Homo sapiens G... 30 4.9 sp|Q9VLC1|FUCTB_DROME Alpha-(1,3)-fucosyltransferase B OS=Drosop... 29 6.5 sp|P0AFZ9|TRKH_SHIFL Trk system potassium uptake protein trkH OS... 29 8.4 sp|Q9L6L2|TRKH_SALTY Trk system potassium uptake protein trkH OS... 29 8.4 sp|P0AFZ7|TRKH_ECOLI Trk system potassium uptake protein trkH OS... 29 8.4 sp|P0AFZ8|TRKH_ECO57 Trk system potassium uptake protein trkH OS... 29 8.4 sp|Q96GX9|APIP_HUMAN APAF1-interacting protein OS=Homo sapiens G... 29 8.4
>sp|Q9UJV3|TRIM1_HUMAN Midline-2 OS=Homo sapiens GN=MID2 PE=1 SV=2 Length = 715
Score = 31.6 bits (70), Expect = 1.3 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 4/35 (11%) Frame = -3
Query: 375 YLDHTLRSTNP----FTNAQLLHPSPHNLLRGLSC 283 Y D LR+T+P FT+ +L+ P P LRG++C Sbjct: 141 YCDRCLRATHPNKKPFTSHRLVEPVPDTHLRGITC 175
>sp|Q9I048|DUSA_PSEAE tRNA-dihydrouridine synthase A OS=Pseudomonas aeruginosa GN=dusA PE=3 SV=1 Length = 332
Score = 31.2 bits (69), Expect = 1.7 Identities = 20/51 (39%), Positives = 22/51 (43%), Gaps = 2/51 (3%) Frame = -3
Query: 405 YTPNHKKF--RQYLDHTLRSTNPFTNAQLLHPSPHNLLRGLSCTHTLFLSL 259 +T H +F RQ HTL T T LLH LR C H L L L Sbjct: 24 WTDRHCRFFLRQLSRHTLLYTEMVTTGALLHGDRQRFLRYDECEHPLALQL 74
>sp|P82458|TRI18_RAT Midline-1 OS=Rattus norvegicus GN=Mid1 PE=2 SV=1 Length = 667
Score = 30.0 bits (66), Expect = 3.8 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 4/35 (11%) Frame = -3
Query: 375 YLDHTLRSTNP----FTNAQLLHPSPHNLLRGLSC 283 Y D L++T+P FT +L+ P P + +RGL C Sbjct: 141 YCDECLKATHPNKKPFTGHRLIEPIPDSHIRGLMC 175
>sp|P82457|TRI18_MUSSP Midline-1 OS=Mus spretus GN=Mid1 PE=2 SV=1 Length = 667
Score = 30.0 bits (66), Expect = 3.8 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 4/35 (11%) Frame = -3
Query: 375 YLDHTLRSTNP----FTNAQLLHPSPHNLLRGLSC 283 Y D L++T+P FT +L+ P P + +RGL C Sbjct: 141 YCDECLKATHPNKKPFTGHRLIEPIPDSHIRGLMC 175
>sp|O70583|TRI18_MOUSE Midline-1 OS=Mus musculus GN=Mid1 PE=1 SV=1 Length = 680
Score = 30.0 bits (66), Expect = 3.8 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 4/35 (11%) Frame = -3
Query: 375 YLDHTLRSTNP----FTNAQLLHPSPHNLLRGLSC 283 Y D L++T+P FT +L+ P P + +RGL C Sbjct: 141 YCDECLKATHPNKKPFTGHRLIEPIPDSHIRGLMC 175
>sp|O15344|TRI18_HUMAN Midline-1 OS=Homo sapiens GN=MID1 PE=1 SV=1 Length = 667
Score = 30.0 bits (66), Expect = 3.8 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 4/35 (11%) Frame = -3
Query: 375 YLDHTLRSTNP----FTNAQLLHPSPHNLLRGLSC 283 Y D L++T+P FT +L+ P P + +RGL C Sbjct: 141 YCDECLKATHPNKKPFTGHRLIEPIPDSHIRGLMC 175
>sp|Q2PPJ7|AS250_HUMAN 250 kDa substrate of Akt OS=Homo sapiens GN=C20orf74 PE=1 SV=2 Length = 1873
Score = 29.6 bits (65), Expect = 4.9 Identities = 14/44 (31%), Positives = 22/44 (50%) Frame = +2
Query: 89 SALGNEHSLKGPKASYSSRILAVFLVSSSSILQPSHFLCKFAGL 220 + L +HS + P Y R+L + SS+ Q SH++ A L Sbjct: 1282 AVLEEQHSARAPLLDYIYRVLHCCVCGSSTYTQQSHYILTLADL 1325
>sp|Q9VLC1|FUCTB_DROME Alpha-(1,3)-fucosyltransferase B OS=Drosophila melanogaster GN=FucTB PE=1 SV=2 Length = 444
Score = 29.3 bits (64), Expect = 6.5 Identities = 12/30 (40%), Positives = 15/30 (50%) Frame = -3
Query: 408 KYTPNHKKFRQYLDHTLRSTNPFTNAQLLH 319 K N K + Y H L NP +N +LLH Sbjct: 300 KLADNKKLYNSYRQHKLNRRNPISNKKLLH 329
>sp|P0AFZ9|TRKH_SHIFL Trk system potassium uptake protein trkH OS=Shigella flexneri GN=trkH PE=3 SV=1 Length = 483
Score = 28.9 bits (63), Expect = 8.4 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = +3
Query: 132 ATLAGFWPCFLCRLPLFFSLLIFCASLLG 218 AT AGF + R PLF +L+ C++ +G Sbjct: 316 ATTAGFTTDSIARWPLFLPVLLLCSAFIG 344
>sp|Q9L6L2|TRKH_SALTY Trk system potassium uptake protein trkH OS=Salmonella typhimurium GN=trkH PE=3 SV=1 Length = 483
Score = 28.9 bits (63), Expect = 8.4 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = +3
Query: 132 ATLAGFWPCFLCRLPLFFSLLIFCASLLG 218 AT AGF + R PLF +L+ C++ +G Sbjct: 316 ATTAGFTTDSIARWPLFLPVLLLCSAFIG 344
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9V4H4 |
Definition |
tr|A9V4H4|A9V4H4_MONBE Predicted protein OS=Monosiga brevicollis |
Align length |
57 |
Score (bit) |
37.4 |
E-value |
0.38 |
Report |
|