BP913954
Clone id YMU001_000038_C04
Library
Length 413
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000038_C04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
AATGTAATGTGTGGCTGGAAAGAGGTGAAGTAAAAAAGGGAAAAGGGGCGACCCTTTATG
GGAGGAGTTTTTTTGTTAAAGGAGAAAGAGTGCGCTGGGCAACGAGCATTCATTGAAAGG
CCCCAAAGCAAGCTACTCTAGCCGGATTTTGGCCGTGTTTCTTGTGTCGTCTTCCTCTAT
TCTTCAGCCTTCTCATTTTTTGTGCAAGTTTGCTGGGCTGTGTGTATGTGTGAGCCCTTA
GGATTGATTGTGTGTGTACAAAGAGAGAAAGAGAGTGTGAGTGCAGGAGAGACCACGAAG
GAGATTGTGCGGGCTGGGATGTAAAAGCTGTGCGTTTGTGAACGGGTTTGTACTTCGGAG
TGTGTGGTCGAGGTATTGGCGAAATTTTTTGTGATTAGGTGTGTATTTCCAAG
■■Homology search results ■■ -
sp_hit_id Q9UJV3
Definition sp|Q9UJV3|TRIM1_HUMAN Midline-2 OS=Homo sapiens
Align length 35
Score (bit) 31.6
E-value 1.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP913954|Adiantum capillus-veneris mRNA, clone:
YMU001_000038_C04.
(413 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9UJV3|TRIM1_HUMAN Midline-2 OS=Homo sapiens GN=MID2 PE=1 SV=2 32 1.3
sp|Q9I048|DUSA_PSEAE tRNA-dihydrouridine synthase A OS=Pseudomon... 31 1.7
sp|P82458|TRI18_RAT Midline-1 OS=Rattus norvegicus GN=Mid1 PE=2 ... 30 3.8
sp|P82457|TRI18_MUSSP Midline-1 OS=Mus spretus GN=Mid1 PE=2 SV=1 30 3.8
sp|O70583|TRI18_MOUSE Midline-1 OS=Mus musculus GN=Mid1 PE=1 SV=1 30 3.8
sp|O15344|TRI18_HUMAN Midline-1 OS=Homo sapiens GN=MID1 PE=1 SV=1 30 3.8
sp|Q2PPJ7|AS250_HUMAN 250 kDa substrate of Akt OS=Homo sapiens G... 30 4.9
sp|Q9VLC1|FUCTB_DROME Alpha-(1,3)-fucosyltransferase B OS=Drosop... 29 6.5
sp|P0AFZ9|TRKH_SHIFL Trk system potassium uptake protein trkH OS... 29 8.4
sp|Q9L6L2|TRKH_SALTY Trk system potassium uptake protein trkH OS... 29 8.4
sp|P0AFZ7|TRKH_ECOLI Trk system potassium uptake protein trkH OS... 29 8.4
sp|P0AFZ8|TRKH_ECO57 Trk system potassium uptake protein trkH OS... 29 8.4
sp|Q96GX9|APIP_HUMAN APAF1-interacting protein OS=Homo sapiens G... 29 8.4

>sp|Q9UJV3|TRIM1_HUMAN Midline-2 OS=Homo sapiens GN=MID2 PE=1 SV=2
Length = 715

Score = 31.6 bits (70), Expect = 1.3
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 4/35 (11%)
Frame = -3

Query: 375 YLDHTLRSTNP----FTNAQLLHPSPHNLLRGLSC 283
Y D LR+T+P FT+ +L+ P P LRG++C
Sbjct: 141 YCDRCLRATHPNKKPFTSHRLVEPVPDTHLRGITC 175


>sp|Q9I048|DUSA_PSEAE tRNA-dihydrouridine synthase A OS=Pseudomonas
aeruginosa GN=dusA PE=3 SV=1
Length = 332

Score = 31.2 bits (69), Expect = 1.7
Identities = 20/51 (39%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Frame = -3

Query: 405 YTPNHKKF--RQYLDHTLRSTNPFTNAQLLHPSPHNLLRGLSCTHTLFLSL 259
+T H +F RQ HTL T T LLH LR C H L L L
Sbjct: 24 WTDRHCRFFLRQLSRHTLLYTEMVTTGALLHGDRQRFLRYDECEHPLALQL 74


>sp|P82458|TRI18_RAT Midline-1 OS=Rattus norvegicus GN=Mid1 PE=2
SV=1
Length = 667

Score = 30.0 bits (66), Expect = 3.8
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Frame = -3

Query: 375 YLDHTLRSTNP----FTNAQLLHPSPHNLLRGLSC 283
Y D L++T+P FT +L+ P P + +RGL C
Sbjct: 141 YCDECLKATHPNKKPFTGHRLIEPIPDSHIRGLMC 175


>sp|P82457|TRI18_MUSSP Midline-1 OS=Mus spretus GN=Mid1 PE=2 SV=1
Length = 667

Score = 30.0 bits (66), Expect = 3.8
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Frame = -3

Query: 375 YLDHTLRSTNP----FTNAQLLHPSPHNLLRGLSC 283
Y D L++T+P FT +L+ P P + +RGL C
Sbjct: 141 YCDECLKATHPNKKPFTGHRLIEPIPDSHIRGLMC 175


>sp|O70583|TRI18_MOUSE Midline-1 OS=Mus musculus GN=Mid1 PE=1 SV=1
Length = 680

Score = 30.0 bits (66), Expect = 3.8
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Frame = -3

Query: 375 YLDHTLRSTNP----FTNAQLLHPSPHNLLRGLSC 283
Y D L++T+P FT +L+ P P + +RGL C
Sbjct: 141 YCDECLKATHPNKKPFTGHRLIEPIPDSHIRGLMC 175


>sp|O15344|TRI18_HUMAN Midline-1 OS=Homo sapiens GN=MID1 PE=1 SV=1
Length = 667

Score = 30.0 bits (66), Expect = 3.8
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Frame = -3

Query: 375 YLDHTLRSTNP----FTNAQLLHPSPHNLLRGLSC 283
Y D L++T+P FT +L+ P P + +RGL C
Sbjct: 141 YCDECLKATHPNKKPFTGHRLIEPIPDSHIRGLMC 175


>sp|Q2PPJ7|AS250_HUMAN 250 kDa substrate of Akt OS=Homo sapiens
GN=C20orf74 PE=1 SV=2
Length = 1873

Score = 29.6 bits (65), Expect = 4.9
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +2

Query: 89 SALGNEHSLKGPKASYSSRILAVFLVSSSSILQPSHFLCKFAGL 220
+ L +HS + P Y R+L + SS+ Q SH++ A L
Sbjct: 1282 AVLEEQHSARAPLLDYIYRVLHCCVCGSSTYTQQSHYILTLADL 1325


>sp|Q9VLC1|FUCTB_DROME Alpha-(1,3)-fucosyltransferase B
OS=Drosophila melanogaster GN=FucTB PE=1 SV=2
Length = 444

Score = 29.3 bits (64), Expect = 6.5
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -3

Query: 408 KYTPNHKKFRQYLDHTLRSTNPFTNAQLLH 319
K N K + Y H L NP +N +LLH
Sbjct: 300 KLADNKKLYNSYRQHKLNRRNPISNKKLLH 329


>sp|P0AFZ9|TRKH_SHIFL Trk system potassium uptake protein trkH
OS=Shigella flexneri GN=trkH PE=3 SV=1
Length = 483

Score = 28.9 bits (63), Expect = 8.4
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3

Query: 132 ATLAGFWPCFLCRLPLFFSLLIFCASLLG 218
AT AGF + R PLF +L+ C++ +G
Sbjct: 316 ATTAGFTTDSIARWPLFLPVLLLCSAFIG 344


>sp|Q9L6L2|TRKH_SALTY Trk system potassium uptake protein trkH
OS=Salmonella typhimurium GN=trkH PE=3 SV=1
Length = 483

Score = 28.9 bits (63), Expect = 8.4
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3

Query: 132 ATLAGFWPCFLCRLPLFFSLLIFCASLLG 218
AT AGF + R PLF +L+ C++ +G
Sbjct: 316 ATTAGFTTDSIARWPLFLPVLLLCSAFIG 344


tr_hit_id A9V4H4
Definition tr|A9V4H4|A9V4H4_MONBE Predicted protein OS=Monosiga brevicollis
Align length 57
Score (bit) 37.4
E-value 0.38
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP913954|Adiantum capillus-veneris mRNA, clone:
YMU001_000038_C04.
(413 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9V4H4|A9V4H4_MONBE Predicted protein OS=Monosiga brevicollis... 37 0.38
tr|B5DDW7|B5DDW7_XENTR Putative uncharacterized protein (Fragmen... 33 9.3
tr|A1K8H9|A1K8H9_AZOSB Naphthalene 1,2-dioxygenase / Ferredoxin-... 33 9.3
tr|A9V8F0|A9V8F0_MONBE Predicted protein OS=Monosiga brevicollis... 33 9.3

>tr|A9V4H4|A9V4H4_MONBE Predicted protein OS=Monosiga brevicollis
GN=33273 PE=4 SV=1
Length = 473

Score = 37.4 bits (85), Expect = 0.38
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Frame = -3

Query: 372 LDHTLRSTNPFTNAQLLHPSPHNLLRGLSCTHTLFLSL-----YTHNQS*GLTHTHS 217
L H+L + T++ L H H+L L+ THTL L+L +TH+ + LTHTHS
Sbjct: 70 LTHSLTQSLSHTHS-LNHSLTHSLTHSLTLTHTLSLTLSHTLSHTHSLNHSLTHTHS 125



Score = 32.7 bits (73), Expect = 9.3
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Frame = -1

Query: 413 LGNTHLITKNFANTSTTHSEVQTRSQTHSF-----YIPARTISFVVSPALTLSFSLC-TH 252
L +TH + N S THS Q+ S THS + +++ + +LTLS +L TH
Sbjct: 60 LSHTHSL-----NHSLTHSLTQSLSHTHSLNHSLTHSLTHSLTLTHTLSLTLSHTLSHTH 114

Query: 251 TINPKGSHIHTAQQTCT 201
++N +H H+ + T
Sbjct: 115 SLNHSLTHTHSLTHSLT 131


>tr|B5DDW7|B5DDW7_XENTR Putative uncharacterized protein (Fragment)
OS=Xenopus tropicalis PE=2 SV=1
Length = 483

Score = 32.7 bits (73), Expect = 9.3
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Frame = -3

Query: 327 LLHPSPHNLLRGLSCTHT-----LFLSLYTHNQS*GLTHTHSPANLHKK*EG*RIEEDDT 163
++H H L L+ THT L+ YTH+ + LT+TH+P + K G E ++
Sbjct: 29 VIHLHTHTPLYTLTYTHTHLHTLLYTHPYTHSLTHTLTYTHTPIHTAGKESGRAWERGES 88

Query: 162 RNTAKI 145
A++
Sbjct: 89 HGAAQV 94


>tr|A1K8H9|A1K8H9_AZOSB Naphthalene 1,2-dioxygenase /
Ferredoxin--NAD(+) reductase OS=Azoarcus sp. (strain
BH72) GN=nagAa PE=4 SV=1
Length = 328

Score = 32.7 bits (73), Expect = 9.3
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = +1

Query: 223 CMCEPLGLIVCVQREKESVSAGETTKEIVRAGM*KLCVCERVCTSECVVEV 375
CM G C R E + AG R G + C+ V TS+CV+E+
Sbjct: 35 CMSGRCGTCRCEVRAGEVLDAGPAAGRSGRNGQSGVLACQAVLTSDCVIEI 85


>tr|A9V8F0|A9V8F0_MONBE Predicted protein OS=Monosiga brevicollis
GN=28523 PE=4 SV=1
Length = 825

Score = 32.7 bits (73), Expect = 9.3
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = +1

Query: 157 VSCVVFLYSSAFSFFVQVCWAVCMCEPLGLIVCVQREKESVSAGE 291
+ C+ F F FFV VC VC+C + VCV+ S SA E
Sbjct: 28 IKCICFACLPFFFFFVLVCVCVCVC----VCVCVRVMASSGSADE 68