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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913956
Clone id YMU001_000038_C06
Library
Length 532
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000038_C06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TGAACATCGATGAAGAGCGATGGACCAAAATGAAGGCACAGTTCAATACAGCTCATAATT
ATCCCACAACAGCAATAGATGTTGCAAATTTGGACATCAAGCAAAAGCAATAGAATATAC
AAGTGGTTGAGGTGGACCTTTTTCAATGGCATCCCGTTTAATAAAGCTGAAAATTTATCC
TTCATCACAGGAACCCACCCAAATTTTACTAAATAGGTGCCAGAGCTCTGGCCAAGTATT
CCTTGCCAAAAACCACCCATCGAGATTCCACACAGCAAACATTCAATAATTCAACTCCAT
CCAAGAAGAACAGGAGACCATGATAATGTAAAGCCATGTGCCAACTGATGTCTGCTCTCG
GGCCAAGTTCTCTCCACAATAAAGCCCCGGCTCACCTCCACCCATCTACCTTTCTTTTCT
GAGCTTCCAACAACATGTTTCTGCCAGTGATTCTGCATTCCTGCTGTATAGTTACAGCCG
GGTATGCTAGTGGCTGCGGCAGTGCCAATATCAGGATTCCAGCAGACCTCTA
■■Homology search results ■■ -
sp_hit_id Q669X6
Definition sp|Q669X6|KDUI_YERPS 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase OS=Yersinia pseudotuberculosis
Align length 79
Score (bit) 31.6
E-value 2.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913956|Adiantum capillus-veneris mRNA, clone:
YMU001_000038_C06.
         (532 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q669X6|KDUI_YERPS 4-deoxy-L-threo-5-hexosulose-uronate ketol-...    32   2.5  
sp|A4TLE6|KDUI_YERPP 4-deoxy-L-threo-5-hexosulose-uronate ketol-...    32   2.5  
sp|Q1CIE6|KDUI_YERPN 4-deoxy-L-threo-5-hexosulose-uronate ketol-...    32   2.5  
sp|Q8ZFH8|KDUI_YERPE 4-deoxy-L-threo-5-hexosulose-uronate ketol-...    32   2.5  
sp|Q1C713|KDUI_YERPA 4-deoxy-L-threo-5-hexosulose-uronate ketol-...    32   2.5  
sp|A7FHE3|KDUI_YERP3 4-deoxy-L-threo-5-hexosulose-uronate ketol-...    32   2.5  
sp|Q9UVE1|HIS7_ZYGRO Imidazoleglycerol-phosphate dehydratase OS=...    31   3.2  
sp|Q5GH62|XKR9_MOUSE XK-related protein 9 OS=Mus musculus GN=Xkr...    31   4.3  
sp|Q6R3M4|POLI_MOUSE DNA polymerase iota OS=Mus musculus GN=Poli...    30   7.3  
sp|Q8EMM9|KDUI_OCEIH 4-deoxy-L-threo-5-hexosulose-uronate ketol-...    30   9.4  
sp|Q9VDW6|DMDA_DROME Dystrophin, isoforms A/C/F/G/H OS=Drosophil...    30   9.4  
sp|Q09744|YB63_SCHPO Uncharacterized FAD-binding protein C12C2.0...    30   9.5  

>sp|Q669X6|KDUI_YERPS 4-deoxy-L-threo-5-hexosulose-uronate
           ketol-isomerase OS=Yersinia pseudotuberculosis GN=kduI
           PE=3 SV=1
          Length = 278

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 27/79 (34%), Positives = 33/79 (41%), Gaps = 9/79 (11%)
 Frame = +3

Query: 192 NPPKFY*IGARALAKYSLPKTTHRDSTQQTFNNSTPSKKNRRP------**CKAMCQL-- 347
           NP KFY   A A   Y   K T  +++ QT  +   S  NRR             CQL  
Sbjct: 122 NPAKFYYNSAPAHTTYPNKKITLAEASPQTLGDDATS--NRRTINKYIVPDVLPTCQLSM 179

Query: 348 -MSALGPSSLHNKAPAHLH 401
            ++ L P SL N  P H H
Sbjct: 180 GLTKLAPGSLWNTMPCHTH 198


>sp|A4TLE6|KDUI_YERPP 4-deoxy-L-threo-5-hexosulose-uronate
           ketol-isomerase OS=Yersinia pestis (strain Pestoides F)
           GN=kduI PE=3 SV=1
          Length = 278

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 27/79 (34%), Positives = 33/79 (41%), Gaps = 9/79 (11%)
 Frame = +3

Query: 192 NPPKFY*IGARALAKYSLPKTTHRDSTQQTFNNSTPSKKNRRP------**CKAMCQL-- 347
           NP KFY   A A   Y   K T  +++ QT  +   S  NRR             CQL  
Sbjct: 122 NPAKFYYNSAPAHTTYPNKKITLAEASPQTLGDDATS--NRRTINKYIVPDVLPTCQLSM 179

Query: 348 -MSALGPSSLHNKAPAHLH 401
            ++ L P SL N  P H H
Sbjct: 180 GLTKLAPGSLWNTMPCHTH 198


>sp|Q1CIE6|KDUI_YERPN 4-deoxy-L-threo-5-hexosulose-uronate
           ketol-isomerase OS=Yersinia pestis bv. Antiqua (strain
           Nepal516) GN=kduI PE=3 SV=1
          Length = 278

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 27/79 (34%), Positives = 33/79 (41%), Gaps = 9/79 (11%)
 Frame = +3

Query: 192 NPPKFY*IGARALAKYSLPKTTHRDSTQQTFNNSTPSKKNRRP------**CKAMCQL-- 347
           NP KFY   A A   Y   K T  +++ QT  +   S  NRR             CQL  
Sbjct: 122 NPAKFYYNSAPAHTTYPNKKITLAEASPQTLGDDATS--NRRTINKYIVPDVLPTCQLSM 179

Query: 348 -MSALGPSSLHNKAPAHLH 401
            ++ L P SL N  P H H
Sbjct: 180 GLTKLAPGSLWNTMPCHTH 198


>sp|Q8ZFH8|KDUI_YERPE 4-deoxy-L-threo-5-hexosulose-uronate
           ketol-isomerase OS=Yersinia pestis GN=kduI PE=3 SV=1
          Length = 278

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 27/79 (34%), Positives = 33/79 (41%), Gaps = 9/79 (11%)
 Frame = +3

Query: 192 NPPKFY*IGARALAKYSLPKTTHRDSTQQTFNNSTPSKKNRRP------**CKAMCQL-- 347
           NP KFY   A A   Y   K T  +++ QT  +   S  NRR             CQL  
Sbjct: 122 NPAKFYYNSAPAHTTYPNKKITLAEASPQTLGDDATS--NRRTINKYIVPDVLPTCQLSM 179

Query: 348 -MSALGPSSLHNKAPAHLH 401
            ++ L P SL N  P H H
Sbjct: 180 GLTKLAPGSLWNTMPCHTH 198


>sp|Q1C713|KDUI_YERPA 4-deoxy-L-threo-5-hexosulose-uronate
           ketol-isomerase OS=Yersinia pestis bv. Antiqua (strain
           Antiqua) GN=kduI PE=3 SV=1
          Length = 278

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 27/79 (34%), Positives = 33/79 (41%), Gaps = 9/79 (11%)
 Frame = +3

Query: 192 NPPKFY*IGARALAKYSLPKTTHRDSTQQTFNNSTPSKKNRRP------**CKAMCQL-- 347
           NP KFY   A A   Y   K T  +++ QT  +   S  NRR             CQL  
Sbjct: 122 NPAKFYYNSAPAHTTYPNKKITLAEASPQTLGDDATS--NRRTINKYIVPDVLPTCQLSM 179

Query: 348 -MSALGPSSLHNKAPAHLH 401
            ++ L P SL N  P H H
Sbjct: 180 GLTKLAPGSLWNTMPCHTH 198


>sp|A7FHE3|KDUI_YERP3 4-deoxy-L-threo-5-hexosulose-uronate
           ketol-isomerase OS=Yersinia pseudotuberculosis serotype
           O:1b (strain IP 31758) GN=kduI PE=3 SV=1
          Length = 278

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 27/79 (34%), Positives = 33/79 (41%), Gaps = 9/79 (11%)
 Frame = +3

Query: 192 NPPKFY*IGARALAKYSLPKTTHRDSTQQTFNNSTPSKKNRRP------**CKAMCQL-- 347
           NP KFY   A A   Y   K T  +++ QT  +   S  NRR             CQL  
Sbjct: 122 NPAKFYYNSAPAHTTYPNKKITLAEASPQTLGDDATS--NRRTINKYIVPDVLPTCQLSM 179

Query: 348 -MSALGPSSLHNKAPAHLH 401
            ++ L P SL N  P H H
Sbjct: 180 GLTKLAPGSLWNTMPCHTH 198


>sp|Q9UVE1|HIS7_ZYGRO Imidazoleglycerol-phosphate dehydratase
           OS=Zygosaccharomyces rouxii GN=HIS3 PE=3 SV=1
          Length = 226

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 12/51 (23%)
 Frame = -3

Query: 302 GWS*IIECLL------------CGISMGGFWQGILGQSSGTYLVKFGWVPV 186
           GWS I+EC+             CGI++G  ++  LGQ  G     FG+ P+
Sbjct: 80  GWSLIVECIGDLHIDDHHTTEDCGIALGDAFKQALGQVRGVKRFGFGFAPL 130


>sp|Q5GH62|XKR9_MOUSE XK-related protein 9 OS=Mus musculus GN=Xkr9
           PE=2 SV=1
          Length = 373

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = -2

Query: 327 IIMVSCS--SWMELNY*MFAVWNLDGWFLARNTWPELWHLFSKI 202
           +IMVSC   SW  ++Y +    +L    L R  WP+L +LF K+
Sbjct: 167 VIMVSCCAISWSTVDYQIALRKSLPDKNLLRGLWPKLMYLFYKL 210


>sp|Q6R3M4|POLI_MOUSE DNA polymerase iota OS=Mus musculus GN=Poli
           PE=1 SV=1
          Length = 717

 Score = 30.0 bits (66), Expect = 7.3
 Identities = 20/85 (23%), Positives = 36/85 (42%)
 Frame = +1

Query: 190 GTHPNFTK*VPELWPSIPCQKPPIEIPHSKHSIIQLHPRRTGDHDNVKPCAN*CLLSGQV 369
           G  P+  + V   +    C +   + P   H I +L    TG+HD++ P  +       +
Sbjct: 336 GRKPHTVRLVIRRYSDKHCNRESRQCPIPSHVIQKLG---TGNHDSMPPLID-------I 385

Query: 370 LSTIKPRLTSTHLPFFSELPTTCFC 444
           L  +   + +  +PF   L + CFC
Sbjct: 386 LMKLFRNMVNVKMPFHLTLMSVCFC 410


>sp|Q8EMM9|KDUI_OCEIH 4-deoxy-L-threo-5-hexosulose-uronate
           ketol-isomerase OS=Oceanobacillus iheyensis GN=kduI PE=3
           SV=1
          Length = 277

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
 Frame = +3

Query: 192 NPPKFY*IGARALAKYSLPKTTHRDSTQQTFNNSTPSKKNRRP**CKA----MCQL---M 350
           NP +FY + A A   Y   K + +++T +   + + S K        A     CQL   M
Sbjct: 121 NPARFYIVSATAHKNYPTQKKSLQEATHRHLGDDSQSNKRDLYQYIHADGIQSCQLMMGM 180

Query: 351 SALGPSSLHNKAPAHLH 401
           + L  +++ N  P H+H
Sbjct: 181 TFLSENNMWNTMPPHIH 197
tr_hit_id A9SSK3
Definition tr|A9SSK3|A9SSK3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 76
Score (bit) 52.4
E-value 1.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913956|Adiantum capillus-veneris mRNA, clone:
YMU001_000038_C06.
         (532 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SSK3|A9SSK3_PHYPA Predicted protein OS=Physcomitrella paten...    52   1e-05
tr|B2JIF0|B2JIF0_BURP8 Putative uncharacterized protein OS=Burkh...    34   4.0  
tr|A5D4B4|A5D4B4_PELTS Glutamate synthase domain 2 OS=Pelotomacu...    34   4.1  
tr|A4QZ48|A4QZ48_MAGGR Putative uncharacterized protein OS=Magna...    34   5.4  
tr|A0E2R7|A0E2R7_PARTE Chromosome undetermined scaffold_75, whol...    33   6.9  
tr|A9RSS8|A9RSS8_PHYPA Predicted protein (Fragment) OS=Physcomit...    33   7.0  
tr|Q4PCE0|Q4PCE0_USTMA Putative uncharacterized protein OS=Ustil...    33   7.0  
tr|Q84QT0|Q84QT0_ORYSJ Os08g0346500 protein OS=Oryza sativa subs...    33   9.2  

>tr|A9SSK3|A9SSK3_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PHYPADRAFT_234038 PE=4 SV=1
          Length = 895

 Score = 52.4 bits (124), Expect = 1e-05
 Identities = 29/76 (38%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
 Frame = -3

Query: 530  EVCWNPDIGTAA-ATSIPGCNYTAGMQNHWQKHVVGSSEKKGRWVEVSRGFIVERTWPES 354
            EVCW  +      + S PG    +G                G W+EVSRGF+VE TWP S
Sbjct: 820  EVCWTDNWDPCLESVSSPGLASASGE----------GVPPMGAWLEVSRGFVVEDTWPVS 869

Query: 353  RHQLAHGFTLSWSPVL 306
            +    HG+ +SWSP L
Sbjct: 870  KLYRPHGYVVSWSPSL 885


>tr|B2JIF0|B2JIF0_BURP8 Putative uncharacterized protein
           OS=Burkholderia phymatum (strain DSM 17167 / STM815)
           GN=Bphy_1362 PE=4 SV=1
          Length = 338

 Score = 34.3 bits (77), Expect = 4.0
 Identities = 15/28 (53%), Positives = 16/28 (57%)
 Frame = -3

Query: 410 GRWVEVSRGFIVERTWPESRHQLAHGFT 327
           G+W E SRGFIV   WPE  H  A   T
Sbjct: 308 GQWSERSRGFIVPDDWPEQAHAFARQST 335


>tr|A5D4B4|A5D4B4_PELTS Glutamate synthase domain 2 OS=Pelotomaculum
            thermopropionicum (strain DSM 13744 / JCM 10971 / SI)
            GN=GltB PE=4 SV=1
          Length = 1527

 Score = 34.3 bits (77), Expect = 4.1
 Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
 Frame = -1

Query: 445  GRNMLLEAQKRKVDGWR*AG----ALLWRELGPRADISWHMALHYHGLLFFLDGVELLNV 278
            GR  +L+ QKR +D W+  G    ALLW+   P +   +     YHGL   LD   LL +
Sbjct: 1187 GRTDVLQ-QKRNIDHWKAKGLDLSALLWQPDVPESVGRYCRVSQYHGLEKSLDRQVLLKI 1245

Query: 277  C 275
            C
Sbjct: 1246 C 1246


>tr|A4QZ48|A4QZ48_MAGGR Putative uncharacterized protein
           OS=Magnaporthe grisea GN=MGG_07856 PE=4 SV=1
          Length = 712

 Score = 33.9 bits (76), Expect = 5.4
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -2

Query: 348 SVGTWLYIIMVSCSSWMELNY*MFAVWNLDGWFLARNTWPELWHLF 211
           +V TW ++++ +C++W  L+     +    G FLAR  W  LW  +
Sbjct: 5   AVATWAFVLLATCAAWNVLSCWRSPLRRYPGPFLAR--WTNLWRFY 48


>tr|A0E2R7|A0E2R7_PARTE Chromosome undetermined scaffold_75, whole
           genome shotgun sequence OS=Paramecium tetraurelia
           GN=GSPATT00022756001 PE=4 SV=1
          Length = 327

 Score = 33.5 bits (75), Expect = 6.9
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = -3

Query: 461 GMQNHWQKHVVGSSEKKGRWVEVSRGFIVERTWPESRHQLAHGFTLSWSPVLL 303
           G Q+    H    S++KGR  +   G   +R W    H +  G T  W P LL
Sbjct: 176 GKQDRLTTHSPMQSDRKGRISQSQIGSSTQRYWYSCSHHIQEGLTNGWYPRLL 228


>tr|A9RSS8|A9RSS8_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_118936 PE=4 SV=1
          Length = 665

 Score = 33.5 bits (75), Expect = 7.0
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -2

Query: 318 VSCSSWMELNY*MFAVWNLDGWFLARNTWPELWHL 214
           V CS+W ELN+  F      GWF  +N WP ++ L
Sbjct: 340 VDCSNWSELNFHKFFTGYEKGWF-DKNGWPVMYKL 373


>tr|Q4PCE0|Q4PCE0_USTMA Putative uncharacterized protein OS=Ustilago
           maydis GN=UM02223.1 PE=4 SV=1
          Length = 478

 Score = 33.5 bits (75), Expect = 7.0
 Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
 Frame = -2

Query: 312 CSSWMELNY*MFAVW--NLDGWFLARNTWPELWH-LFSKIWVGSCDEG*IFSFIKRDAIE 142
           CS++ +++Y + A    N+ G  + R      WH L S IW G+CD+G + +   RD+I+
Sbjct: 117 CSNYHQISYSVGAKHDSNVKGHAIYRKIENPFWHPLNSIIWNGTCDQGMLTADGLRDSIQ 176

Query: 141 KG 136
            G
Sbjct: 177 HG 178


>tr|Q84QT0|Q84QT0_ORYSJ Os08g0346500 protein OS=Oryza sativa subsp.
           japonica GN=P0410E11.135 PE=4 SV=1
          Length = 307

 Score = 33.1 bits (74), Expect = 9.2
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +1

Query: 238 IPCQKPPIE-IPHSKHSIIQLHPRRTGDHDNVKPC 339
           +P  + P++  PHSK+S  Q+ P ++  HD+  PC
Sbjct: 204 VPISESPVQGAPHSKNSQSQVEPTKSPSHDDALPC 238