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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913962
Clone id YMU001_000038_C12
Library
Length 582
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000038_C12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CTTCTCTGGTGGTCTGGGTTTCTGCAAATCTTTCAAATCACATACTCCTTCAATGTGGGT
AAAGCTCTTAAACCTCTTCAAAGGCTCACAACACTCTTCTTTCAGAGGCAAGCACTTCAA
AGCTGTAGTGGTATAGGCAGATCTTACAACAGTCTCACCAGCCTCCTCTGCTACATTGAC
AAATTCATCAATACCGCCAGTCAAAAGAAAAAGAGGTTTGGTCACAATGGAGCGGGATGG
GACCTTCTCCACATTCTCTGCCATATCCAAGTAATCATCCTCCGCGTATGTCCTCCTTCG
AAGCTCACTTAACAACTCCTCTAAAACAAGCCGTTCATTCTCCTTTCTACACAAATCTTC
TTCTAGGAGTTGGATGGCATGTTCATCATGAAGCGCCTTCTCCTCTGACATTCCTTGATA
GTGATCAGCTTCCATTTGCAATGCTGATTTCTCTTCTTGTAACCGTAAAATCATGGCCAT
TGCTTCATTTGCAGCAGTCTCAGCAGCAACTCTTTCCTCCTCTAACTCCTCATACAAAGT
TCTCAAATTTCTGCGCTCTGCGAGTACCTGCAGGTAATATCT
■■Homology search results ■■ -
sp_hit_id Q8TE82
Definition sp|Q8TE82|S3TC1_HUMAN SH3 domain and tetratricopeptide repeats-containing protein 1 OS=Homo sapiens
Align length 59
Score (bit) 32.7
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913962|Adiantum capillus-veneris mRNA, clone:
YMU001_000038_C12.
         (582 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8TE82|S3TC1_HUMAN SH3 domain and tetratricopeptide repeats-c...    33   1.3  
sp|Q9ZE40|Y108_RICPR Uncharacterized lipoprotein RP108 OS=Ricket...    31   3.9  
sp|Q8CHI8|EP400_MOUSE E1A-binding protein p400 OS=Mus musculus G...    31   5.1  
sp|Q1DX43|SEC31_COCIM Protein transport protein SEC31 OS=Coccidi...    30   8.7  
sp|Q8CJ99|SCLT1_RAT Sodium channel and clathrin linker 1 OS=Ratt...    30   8.8  

>sp|Q8TE82|S3TC1_HUMAN SH3 domain and tetratricopeptide
           repeats-containing protein 1 OS=Homo sapiens GN=SH3TC1
           PE=2 SV=2
          Length = 1336

 Score = 32.7 bits (73), Expect = 1.3
 Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +3

Query: 243 PSPHSLPYPSNHPPRMSSFEAHLTTPLKQAVHSPFYTNLLLGVGWHVHHEAPSP-LTFL 416
           P PHSLP  ++H  R +   A LT    QA+  P YT+L      + HH    P +TF+
Sbjct: 756 PQPHSLPAQTSHYLRQAL--ASLTPGTGQALRGPLYTSL---AQLYSHHGCHGPAITFM 809


>sp|Q9ZE40|Y108_RICPR Uncharacterized lipoprotein RP108 OS=Rickettsia
            prowazekii GN=RP108 PE=3 SV=1
          Length = 1155

 Score = 31.2 bits (69), Expect = 3.9
 Identities = 12/32 (37%), Positives = 24/32 (75%)
 Frame = -1

Query: 453  EKSALQMEADHYQGMSEEKALHDEHAIQLLEE 358
            EK+  Q + ++YQG+++++ +HD H+ +L EE
Sbjct: 949  EKAGRQSDVEYYQGLAQKQLIHDVHS-RLFEE 979


>sp|Q8CHI8|EP400_MOUSE E1A-binding protein p400 OS=Mus musculus
            GN=Ep400 PE=1 SV=2
          Length = 3072

 Score = 30.8 bits (68), Expect = 5.1
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +3

Query: 234  GMGPSPHSLPYPSNHPPRMSSFEAHLTTPLKQAVHSP 344
            G  P   ++ +PS HPPRM++      TP  Q    P
Sbjct: 1469 GQKPEGRTVAFPSTHPPRMANTNTSTATPQGQVRGRP 1505


>sp|Q1DX43|SEC31_COCIM Protein transport protein SEC31 OS=Coccidioides
            immitis GN=SEC31 PE=3 SV=1
          Length = 1261

 Score = 30.0 bits (66), Expect = 8.7
 Identities = 23/86 (26%), Positives = 33/86 (38%)
 Frame = +3

Query: 198  QSKEKEVWSQWSGMGPSPHSLPYPSNHPPRMSSFEAHLTTPLKQAVHSPFYTNLLLGVGW 377
            Q ++  V      + P P S P     PPR SS    +  P  +A + P + +L  G G 
Sbjct: 882  QPRQSNVIPPPQPLAPPPQSGPAGLAPPPRASSQSPSVAAPYTRATNIPAWNDLPEGFGR 941

Query: 378  HVHHEAPSPLTFLDSDQLPFAMLISL 455
                   +P+T       PF    SL
Sbjct: 942  AATPRRSTPVTGSSVISSPFPNTPSL 967


>sp|Q8CJ99|SCLT1_RAT Sodium channel and clathrin linker 1 OS=Rattus
           norvegicus GN=Sclt1 PE=1 SV=1
          Length = 688

 Score = 30.0 bits (66), Expect = 8.8
 Identities = 15/34 (44%), Positives = 24/34 (70%)
 Frame = -1

Query: 471 ILRLQEEKSALQMEADHYQGMSEEKALHDEHAIQ 370
           IL+L+EE SALQM+ D  QG   ++A+  + A++
Sbjct: 394 ILQLKEELSALQMDCDEKQGQI-DRAIRGKRAVE 426
tr_hit_id A7PRD8
Definition tr|A7PRD8|A7PRD8_VITVI Chromosome chr14 scaffold_26, whole genome shotgun sequence OS=Vitis vinifera
Align length 38
Score (bit) 47.4
E-value 0.0006
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913962|Adiantum capillus-veneris mRNA, clone:
YMU001_000038_C12.
         (582 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7PRD8|A7PRD8_VITVI Chromosome chr14 scaffold_26, whole genom...    47   6e-04
tr|A5B2M8|A5B2M8_VITVI Putative uncharacterized protein OS=Vitis...    47   6e-04
tr|A2Q381|A2Q381_MEDTR Putative uncharacterized protein OS=Medic...    47   6e-04
tr|Q10NT0|Q10NT0_ORYSJ Os03g0259900 protein OS=Oryza sativa subs...    47   0.001
tr|A9RYU4|A9RYU4_PHYPA Predicted protein OS=Physcomitrella paten...    47   0.001
tr|A9P7W1|A9P7W1_POPTR Putative uncharacterized protein OS=Popul...    47   0.001
tr|A7Q751|A7Q751_VITVI Chromosome chr5 scaffold_58, whole genome...    47   0.001
tr|A7P3R5|A7P3R5_VITVI Chromosome chr1 scaffold_5, whole genome ...    47   0.001
tr|A3AG89|A3AG89_ORYSJ Putative uncharacterized protein OS=Oryza...    47   0.001
tr|A2XER1|A2XER1_ORYSI Putative uncharacterized protein OS=Oryza...    47   0.001
tr|A9SA43|A9SA43_PHYPA Predicted protein OS=Physcomitrella paten...    46   0.001
tr|A9T0C3|A9T0C3_PHYPA Predicted protein OS=Physcomitrella paten...    46   0.002
tr|A9RV31|A9RV31_PHYPA Predicted protein OS=Physcomitrella paten...    46   0.002
tr|Q9ZTZ4|Q9ZTZ4_ARATH IFA-binding protein OS=Arabidopsis thalia...    45   0.004
tr|Q9CAC4|Q9CAC4_ARATH Putative uncharacterized protein F5A18.7 ...    45   0.004
tr|Q9LFE5|Q9LFE5_ARATH Putative uncharacterized protein F5E19_60...    44   0.005
tr|Q0WNW4|Q0WNW4_ARATH Putative uncharacterized protein At5g1672...    44   0.005
tr|B8A0D5|B8A0D5_MAIZE Putative uncharacterized protein OS=Zea m...    44   0.007
tr|Q9FJN1|Q9FJN1_ARATH Emb|CAA18210.1 OS=Arabidopsis thaliana PE...    44   0.009
tr|A9SIB3|A9SIB3_PHYPA Predicted protein OS=Physcomitrella paten...    44   0.009
tr|A6MGY3|A6MGY3_LILLO IFA binding protein OS=Lilium longiflorum...    44   0.009
tr|Q9SVP9|Q9SVP9_ARATH Putative uncharacterized protein F18A5.20...    43   0.011
tr|A7PFN2|A7PFN2_VITVI Chromosome chr11 scaffold_14, whole genom...    43   0.011
tr|A5AGS4|A5AGS4_VITVI Putative uncharacterized protein OS=Vitis...    43   0.011
tr|Q9S7T6|Q9S7T6_ARATH Putative uncharacterized protein F9E10.32...    42   0.025
tr|Q8GXL4|Q8GXL4_ARATH Putative uncharacterized protein At1g7483...    42   0.025
tr|Q5ZC01|Q5ZC01_ORYSJ IFA-binding protein-like (Os01g0775200 pr...    42   0.033
tr|B8AA70|B8AA70_ORYSI Putative uncharacterized protein OS=Oryza...    42   0.033
tr|A2ZYC6|A2ZYC6_ORYSJ Putative uncharacterized protein OS=Oryza...    42   0.033
tr|B8AQB9|B8AQB9_ORYSI Putative uncharacterized protein OS=Oryza...    41   0.043

>tr|A7PRD8|A7PRD8_VITVI Chromosome chr14 scaffold_26, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00022466001
           PE=4 SV=1
          Length = 625

 Score = 47.4 bits (111), Expect = 6e-04
 Identities = 23/38 (60%), Positives = 30/38 (78%)
 Frame = -1

Query: 471 ILRLQEEKSALQMEADHYQGMSEEKALHDEHAIQLLEE 358
           I RLQEEK+A+QMEA  YQ M EE++ +D+ A+QLL E
Sbjct: 336 ITRLQEEKAAMQMEALQYQRMMEEQSEYDQEALQLLNE 373


>tr|A5B2M8|A5B2M8_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_000426 PE=4 SV=1
          Length = 983

 Score = 47.4 bits (111), Expect = 6e-04
 Identities = 23/38 (60%), Positives = 30/38 (78%)
 Frame = -1

Query: 471 ILRLQEEKSALQMEADHYQGMSEEKALHDEHAIQLLEE 358
           I RLQEEK+A+QMEA  YQ M EE++ +D+ A+QLL E
Sbjct: 637 ITRLQEEKAAMQMEALQYQRMMEEQSEYDQEALQLLNE 674


>tr|A2Q381|A2Q381_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula GN=MtrDRAFT_AC155282g18v2 PE=4 SV=1
          Length = 986

 Score = 47.4 bits (111), Expect = 6e-04
 Identities = 23/38 (60%), Positives = 30/38 (78%)
 Frame = -1

Query: 471 ILRLQEEKSALQMEADHYQGMSEEKALHDEHAIQLLEE 358
           I RLQEEK+A+QMEA  YQ M EE+A +D+ A+QLL +
Sbjct: 656 ITRLQEEKAAMQMEALQYQRMMEEQAEYDQEALQLLND 693


>tr|Q10NT0|Q10NT0_ORYSJ Os03g0259900 protein OS=Oryza sativa subsp.
           japonica GN=Os03g0259900 PE=2 SV=1
          Length = 900

 Score = 46.6 bits (109), Expect = 0.001
 Identities = 23/38 (60%), Positives = 30/38 (78%)
 Frame = -1

Query: 471 ILRLQEEKSALQMEADHYQGMSEEKALHDEHAIQLLEE 358
           I RLQEEK+A+QMEA  YQ M EE++ +D+ A+QLL E
Sbjct: 571 INRLQEEKAAMQMEALQYQRMMEEQSEYDQEALQLLNE 608


>tr|A9RYU4|A9RYU4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_72257 PE=4 SV=1
          Length = 936

 Score = 46.6 bits (109), Expect = 0.001
 Identities = 23/40 (57%), Positives = 32/40 (80%)
 Frame = -1

Query: 471 ILRLQEEKSALQMEADHYQGMSEEKALHDEHAIQLLEEDL 352
           I RLQEEK+A+QME+  +Q M  EKAL+D+ AI++L+E L
Sbjct: 213 ISRLQEEKAAIQMESRQFQRMVMEKALYDQEAIEVLKEIL 252


>tr|A9P7W1|A9P7W1_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 460

 Score = 46.6 bits (109), Expect = 0.001
 Identities = 23/38 (60%), Positives = 30/38 (78%)
 Frame = -1

Query: 471 ILRLQEEKSALQMEADHYQGMSEEKALHDEHAIQLLEE 358
           I RLQEEK+A+QMEA  YQ M EE++ +D+ A+QLL E
Sbjct: 116 INRLQEEKAAMQMEALQYQRMMEEQSEYDQEALQLLNE 153


>tr|A7Q751|A7Q751_VITVI Chromosome chr5 scaffold_58, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00031689001
           PE=4 SV=1
          Length = 629

 Score = 46.6 bits (109), Expect = 0.001
 Identities = 33/125 (26%), Positives = 63/125 (50%), Gaps = 6/125 (4%)
 Frame = -1

Query: 471 ILRLQEEKSALQMEADHYQGMSEEKALHDEHAIQLLEEDLCXXXXXXXXXXXXXXXXXXR 292
           ILR+QEEK++++MEA  +Q + EEK+ +D   + LL+E L                    
Sbjct: 299 ILRIQEEKASIEMEARQFQRIIEEKSAYDAEEMNLLKEILLRREREKHFLEKEVEAYRQM 358

Query: 291 TYAEDDYL-----DMAENVEKVPSRSI-VTKPLFLLTGGIDEFVNVAEEAGETVVRSAYT 130
            ++E+D L     D+ +  E+ P  S+ +++   L+   I E ++  E+  +    S Y 
Sbjct: 359 MFSENDLLEGNTHDIVDTPEQRPISSLYLSEDPVLMLRRISESIDKEEKVKDADRCSVYE 418

Query: 129 TTALK 115
           +T+++
Sbjct: 419 STSIE 423


>tr|A7P3R5|A7P3R5_VITVI Chromosome chr1 scaffold_5, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00030547001
           PE=4 SV=1
          Length = 335

 Score = 46.6 bits (109), Expect = 0.001
 Identities = 23/38 (60%), Positives = 30/38 (78%)
 Frame = -1

Query: 471 ILRLQEEKSALQMEADHYQGMSEEKALHDEHAIQLLEE 358
           I RLQEEK+A+QMEA  YQ M EE++ +D+ A+QLL E
Sbjct: 4   INRLQEEKAAMQMEALQYQRMMEEQSEYDQEALQLLNE 41


>tr|A3AG89|A3AG89_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_009811 PE=4 SV=1
          Length = 927

 Score = 46.6 bits (109), Expect = 0.001
 Identities = 23/38 (60%), Positives = 30/38 (78%)
 Frame = -1

Query: 471 ILRLQEEKSALQMEADHYQGMSEEKALHDEHAIQLLEE 358
           I RLQEEK+A+QMEA  YQ M EE++ +D+ A+QLL E
Sbjct: 598 INRLQEEKAAMQMEALQYQRMMEEQSEYDQEALQLLNE 635


>tr|A2XER1|A2XER1_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_10824 PE=4 SV=1
          Length = 927

 Score = 46.6 bits (109), Expect = 0.001
 Identities = 23/38 (60%), Positives = 30/38 (78%)
 Frame = -1

Query: 471 ILRLQEEKSALQMEADHYQGMSEEKALHDEHAIQLLEE 358
           I RLQEEK+A+QMEA  YQ M EE++ +D+ A+QLL E
Sbjct: 598 INRLQEEKAAMQMEALQYQRMMEEQSEYDQEALQLLNE 635