BP913969 |
Clone id |
YMU001_000038_D07 |
Library |
YMU01 |
Length |
440 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000038_D07. |
Accession |
BP913969 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
GCTGCTACAGCAATGGGCTGTGGTGCTGGCCGTAACGTCGCAACTCTAAATGATGTTACC AACATACTTTTAAGCTCCAATGTTTGTGGTGATTGTTATGTATTTGATGAAGTTCAGGCA ATCTCGTCACAGCAGTTGACAAAAGTGGGAATACCACAAACTCCGAGTGCCAAGTCAAAC ATGCCCTTTCACTTAATCACACGTGAGGCAGCAAATCTGCTTTTAAATTCGGCTCAGACC TCTAGTTGTACATGAAATTGAGCTTTTTTCTGCCACTGGGATGCCATATTGAAGAGGACT TCTCGCTATAAGGCTTGCTGCAAGCAAGGGCTTTGATGCTGTTGTCATTGACTTGAAACA GATTTGGAGCACTTGTTTGCAAGAGAGTTGGCCATGTGGCTCGGCAGCAGCATTCACTTC GTTGGAGAATGTTACCAAGC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P58822 |
Definition |
sp|P58822|PGIP2_PHAVU Polygalacturonase inhibitor 2 OS=Phaseolus vulgaris |
Align length |
54 |
Score (bit) |
30.4 |
E-value |
3.4 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP913969|Adiantum capillus-veneris mRNA, clone: YMU001_000038_D07. (440 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P58822|PGIP2_PHAVU Polygalacturonase inhibitor 2 OS=Phaseolus... 30 3.4 sp|Q9P225|DYH2_HUMAN Dynein heavy chain 2, axonemal OS=Homo sapi... 30 3.4 sp|Q28651|2A5G_RABIT Serine/threonine-protein phosphatase 2A 56 ... 30 4.4 sp|Q60996|2A5G_MOUSE Serine/threonine-protein phosphatase 2A 56 ... 30 4.4 sp|Q13362|2A5G_HUMAN Serine/threonine-protein phosphatase 2A 56 ... 30 4.4 sp|Q28653|2A5D_RABIT Serine/threonine-protein phosphatase 2A 56 ... 30 4.4 sp|Q14738|2A5D_HUMAN Serine/threonine-protein phosphatase 2A 56 ... 30 4.4 sp|O87389|GLXA_RHIME HTH-type transcriptional regulator glxA OS=... 30 5.7 sp|Q5QVM7|METK_IDILO S-adenosylmethionine synthetase OS=Idiomari... 29 9.8 sp|P03396|ENV_RSVP Envelope glycoprotein gp95 OS=Rous sarcoma vi... 29 9.8
>sp|P58822|PGIP2_PHAVU Polygalacturonase inhibitor 2 OS=Phaseolus vulgaris GN=PGIP2 PE=1 SV=1 Length = 342
Score = 30.4 bits (67), Expect = 3.4 Identities = 18/54 (33%), Positives = 25/54 (46%) Frame = -2
Query: 409 CCRATWPTLLQTSAPNLFQVNDNSIKALACSKPYSEKSSSIWHPSGRKKLNFMY 248 CC TW +L + ++VN+ + L KPY SS P LNF+Y Sbjct: 62 CCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLP----YLNFLY 111
>sp|Q9P225|DYH2_HUMAN Dynein heavy chain 2, axonemal OS=Homo sapiens GN=DNAH2 PE=1 SV=3 Length = 4427
Score = 30.4 bits (67), Expect = 3.4 Identities = 19/58 (32%), Positives = 29/58 (50%) Frame = +1
Query: 46 LNDVTNILLSSNVCGDCYVFDEVQAISSQQLTKVGIPQTPSAKSNMPFHLITREAANL 219 L D+ NIL S V + Y DE + I S + + + Q P + ++ +LI R NL Sbjct: 2830 LEDINNILSSGEV-PNLYKPDEFEEIQSHIIDQARVEQVPESSDSLFAYLIERVQNNL 2886
>sp|Q28651|2A5G_RABIT Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform OS=Oryctolagus cuniculus GN=PPP2R5C PE=2 SV=1 Length = 524
Score = 30.0 bits (66), Expect = 4.4 Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Frame = -2
Query: 208 PHV*LSERACLTWHSEFVVFPLLSTAVTRLPELH-QIHNNHHKHWS 74 PH ++ERA W++E+++ + A LP + ++ N HW+ Sbjct: 338 PHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWN 383
>sp|Q60996|2A5G_MOUSE Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform OS=Mus musculus GN=Ppp2r5c PE=1 SV=2 Length = 524
Score = 30.0 bits (66), Expect = 4.4 Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Frame = -2
Query: 208 PHV*LSERACLTWHSEFVVFPLLSTAVTRLPELH-QIHNNHHKHWS 74 PH ++ERA W++E+++ + A LP + ++ N HW+ Sbjct: 338 PHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWN 383
>sp|Q13362|2A5G_HUMAN Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform OS=Homo sapiens GN=PPP2R5C PE=1 SV=3 Length = 524
Score = 30.0 bits (66), Expect = 4.4 Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Frame = -2
Query: 208 PHV*LSERACLTWHSEFVVFPLLSTAVTRLPELH-QIHNNHHKHWS 74 PH ++ERA W++E+++ + A LP + ++ N HW+ Sbjct: 338 PHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWN 383
>sp|Q28653|2A5D_RABIT Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform OS=Oryctolagus cuniculus GN=PPP2R5D PE=2 SV=1 Length = 586
Score = 30.0 bits (66), Expect = 4.4 Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Frame = -2
Query: 208 PHV*LSERACLTWHSEFVVFPLLSTAVTRLPELH-QIHNNHHKHWS 74 PH ++ERA W++E+++ + A LP + ++ N HW+ Sbjct: 398 PHFQVAERALYYWNNEYIMSLISDNAARVLPIMFPALYRNSKSHWN 443
>sp|Q14738|2A5D_HUMAN Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform OS=Homo sapiens GN=PPP2R5D PE=1 SV=1 Length = 602
Score = 30.0 bits (66), Expect = 4.4 Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Frame = -2
Query: 208 PHV*LSERACLTWHSEFVVFPLLSTAVTRLPELH-QIHNNHHKHWS 74 PH ++ERA W++E+++ + A LP + ++ N HW+ Sbjct: 414 PHFQVAERALYYWNNEYIMSLISDNAARVLPIMFPALYRNSKSHWN 459
>sp|O87389|GLXA_RHIME HTH-type transcriptional regulator glxA OS=Rhizobium meliloti GN=glxA PE=4 SV=1 Length = 324
Score = 29.6 bits (65), Expect = 5.7 Identities = 16/47 (34%), Positives = 25/47 (53%) Frame = -3
Query: 372 VLQICFKSMTTASKPLLAASLIARSPLQYGIPVAEKSSISCTTRGLS 232 V S +A++PL AA+L+A PL +P+A ++ GLS Sbjct: 18 VRNFALMSYASATEPLRAANLLAGRPLYQIVPLAPGGGTVASSSGLS 64
>sp|Q5QVM7|METK_IDILO S-adenosylmethionine synthetase OS=Idiomarina loihiensis GN=metK PE=3 SV=1 Length = 381
Score = 28.9 bits (63), Expect = 9.8 Identities = 19/38 (50%), Positives = 23/38 (60%), Gaps = 2/38 (5%) Frame = -3
Query: 336 SKPLLAASLIARSPLQ--YGIPVAEKSSISCTTRGLSR 229 +K L+AA L R LQ Y I VAE +SIS T G S+ Sbjct: 283 AKNLVAAGLAERCELQISYAIGVAEPTSISIDTFGTSK 320
>sp|P03396|ENV_RSVP Envelope glycoprotein gp95 OS=Rous sarcoma virus (strain Prague C) GN=env PE=1 SV=1 Length = 603
Score = 28.9 bits (63), Expect = 9.8 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 7/70 (10%) Frame = +1
Query: 43 TLNDVTNILLSSNVCGDCYVFDEVQAISSQQLTKVGI-------PQTPSAKSNMPFHLIT 201 +L +VTNI S V G C F +K G+ P T ++ S PF ++T Sbjct: 178 SLPNVTNITQVSGVAGGCVYFAPRATGLFLGWSKQGLSRFLLRHPFTSTSNSTEPFTVVT 237
Query: 202 REAANLLLNS 231 + NL + S Sbjct: 238 ADRHNLFMGS 247
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A5AJ59 |
Definition |
tr|A5AJ59|A5AJ59_VITVI Putative uncharacterized protein OS=Vitis vinifera |
Align length |
68 |
Score (bit) |
45.1 |
E-value |
0.002 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP913969|Adiantum capillus-veneris mRNA, clone: YMU001_000038_D07. (440 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A5AJ59|A5AJ59_VITVI Putative uncharacterized protein OS=Vitis... 45 0.002 tr|A7PUN9|A7PUN9_VITVI Chromosome chr7 scaffold_31, whole genome... 45 0.002 tr|Q8S5U3|Q8S5U3_ORYSJ Os03g0164700 protein OS=Oryza sativa subs... 40 0.058 tr|A3AEG1|A3AEG1_ORYSJ Putative uncharacterized protein OS=Oryza... 40 0.058 tr|A2XCW1|A2XCW1_ORYSI Putative uncharacterized protein OS=Oryza... 40 0.058 tr|Q9ASV2|Q9ASV2_ARATH At1g06730/F4H5_22 OS=Arabidopsis thaliana... 40 0.075 tr|B4FCP5|B4FCP5_MAIZE Putative uncharacterized protein OS=Zea m... 36 0.83 tr|B5YJH5|B5YJH5_THEYD tRNA pseudouridine synthase D OS=Thermode... 36 1.1 tr|B6SW58|B6SW58_MAIZE Protein kinase OS=Zea mays PE=2 SV=1 36 1.1 tr|B4QYI7|B4QYI7_DROSI GD19016 OS=Drosophila simulans GN=GD19016... 33 7.0 tr|Q5K252|Q5K252_GUITH Putative regulatory subunit of protein ph... 33 9.2 tr|B7FRM7|B7FRM7_PHATR Predicted protein OS=Phaeodactylum tricor... 33 9.2
>tr|A5AJ59|A5AJ59_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031405 PE=4 SV=1 Length = 1456
Score = 45.1 bits (105), Expect = 0.002 Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 2/68 (2%) Frame = +1
Query: 1 AATAMGCGAGRNVATLNDVTNILLSSNVCGDCYVFDEV--QAISSQQLTKVGIPQTPSAK 174 AATAMGCGAGRNVA L V ++ +SN+ D ++E+ + +QQ+T + +T Sbjct: 1367 AATAMGCGAGRNVANLEQVIELMRASNLNEDATFWNELLDDNLDAQQIT--FLSKTAXNG 1424
Query: 175 SNMPFHLI 198 SN H + Sbjct: 1425 SNNQLHRV 1432
>tr|A7PUN9|A7PUN9_VITVI Chromosome chr7 scaffold_31, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00023875001 PE=4 SV=1 Length = 459
Score = 44.7 bits (104), Expect = 0.002 Identities = 23/49 (46%), Positives = 33/49 (67%), Gaps = 2/49 (4%) Frame = +1
Query: 1 AATAMGCGAGRNVATLNDVTNILLSSNVCGDCYVFDEV--QAISSQQLT 141 AATAMGCGAGRNVA L V ++ +SN+ D ++E+ + +QQ+T Sbjct: 370 AATAMGCGAGRNVANLEQVIELMRASNLNEDATFWNELLDDNLDAQQIT 418
>tr|Q8S5U3|Q8S5U3_ORYSJ Os03g0164700 protein OS=Oryza sativa subsp. japonica GN=OJ1123F12.7 PE=4 SV=1 Length = 470
Score = 40.0 bits (92), Expect = 0.058 Identities = 22/43 (51%), Positives = 27/43 (62%) Frame = +1
Query: 1 AATAMGCGAGRNVATLNDVTNILLSSNVCGDCYVFDEVQAISS 129 AATA GCGAGRNVA L+ V +L SN+ D + E+ SS Sbjct: 381 AATATGCGAGRNVAHLDKVLQLLRESNINEDDTPWSELIEASS 423
>tr|A3AEG1|A3AEG1_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_009183 PE=4 SV=1 Length = 466
Score = 40.0 bits (92), Expect = 0.058 Identities = 22/43 (51%), Positives = 27/43 (62%) Frame = +1
Query: 1 AATAMGCGAGRNVATLNDVTNILLSSNVCGDCYVFDEVQAISS 129 AATA GCGAGRNVA L+ V +L SN+ D + E+ SS Sbjct: 377 AATATGCGAGRNVAHLDKVLQLLRESNINEDDTPWSELIEASS 419
>tr|A2XCW1|A2XCW1_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_10145 PE=4 SV=1 Length = 470
Score = 40.0 bits (92), Expect = 0.058 Identities = 22/43 (51%), Positives = 27/43 (62%) Frame = +1
Query: 1 AATAMGCGAGRNVATLNDVTNILLSSNVCGDCYVFDEVQAISS 129 AATA GCGAGRNVA L+ V +L SN+ D + E+ SS Sbjct: 381 AATATGCGAGRNVAHLDKVLQLLRESNINEDDTPWSELIEASS 423
>tr|Q9ASV2|Q9ASV2_ARATH At1g06730/F4H5_22 OS=Arabidopsis thaliana GN=At1g06730 PE=2 SV=1 Length = 488
Score = 39.7 bits (91), Expect = 0.075 Identities = 19/44 (43%), Positives = 31/44 (70%) Frame = +1
Query: 1 AATAMGCGAGRNVATLNDVTNILLSSNVCGDCYVFDEVQAISSQ 132 AATAMGCGAGRNVA + V +++ +S + + F+++ A +S+ Sbjct: 396 AATAMGCGAGRNVAKRHQVVDLMKASKLNDEEKFFEQLLAENSE 439
>tr|B4FCP5|B4FCP5_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 149
Score = 36.2 bits (82), Expect = 0.83 Identities = 17/38 (44%), Positives = 26/38 (68%) Frame = +1
Query: 1 AATAMGCGAGRNVATLNDVTNILLSSNVCGDCYVFDEV 114 AATA GCGAGRNVA L+ V ++ +++ D ++ E+ Sbjct: 60 AATATGCGAGRNVARLDKVLQLMREADLNEDITLWTEL 97
>tr|B5YJH5|B5YJH5_THEYD tRNA pseudouridine synthase D OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=truD PE=4 SV=1 Length = 390
Score = 35.8 bits (81), Expect = 1.1 Identities = 20/58 (34%), Positives = 32/58 (55%) Frame = +1
Query: 31 RNVATLNDVTNILLSSNVCGDCYVFDEVQAISSQQLTKVGIPQTPSAKSNMPFHLITR 204 R + TL V N+L+ V G+ FDE+ + + L + IP TPS+ + MP +I + Sbjct: 256 RLLKTLFPVENLLIHKGVAGEYIFFDEIDEKNFEYLKSLEIP-TPSSNAKMPQDIIEK 312
>tr|B6SW58|B6SW58_MAIZE Protein kinase OS=Zea mays PE=2 SV=1 Length = 480
Score = 35.8 bits (81), Expect = 1.1 Identities = 17/38 (44%), Positives = 26/38 (68%) Frame = +1
Query: 1 AATAMGCGAGRNVATLNDVTNILLSSNVCGDCYVFDEV 114 AATA GCGAGRNVA L+ V ++ +++ D ++ E+ Sbjct: 391 AATATGCGAGRNVARLDKVLQLVREADLNEDVTLWTEL 428
>tr|B4QYI7|B4QYI7_DROSI GD19016 OS=Drosophila simulans GN=GD19016 PE=4 SV=1 Length = 365
Score = 33.1 bits (74), Expect = 7.0 Identities = 25/113 (22%), Positives = 44/113 (38%), Gaps = 7/113 (6%) Frame = -2
Query: 397 TWPTLLQTSAPNLFQVNDNSIKALACSKPYSEKSSSIWHPSGRKKLNFMYN*R------- 239 T T+ +TS V DN C+K + ++ +H + L +N + Sbjct: 54 TQETIARTSTDKRISVTDNGYHCTVCNKDFRSRTQQYYHLTCGNDLLKKFNCKECGRRFA 113
Query: 238 SEPNLKADLLPHV*LSERACLTWHSEFVVFPLLSTAVTRLPELHQIHNNHHKH 80 + +LK L+ H S+ +C H F +L + H + +N KH Sbjct: 114 TSSHLKYHLMSHEKQSKHSCSVCHKSFKQPIVL--------QRHMLTHNQEKH 158
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