NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913971
Clone id YMU001_000038_D09
Library
Length 458
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000038_D09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ATCACATGCGGGTGTGGGTATAATCTCGTAAAAACTGAAAATAAAAACATGTGTTGGGCT
TATATATATTAATAAATGAATAGGTGGGATAGCATATCATAATCAATTAGCTTATCTCTA
TAGTGTAGAGACTTGTAGGCTATTATTTGAAAGAATATGTCAGTGGATGGTGAGAGGGGA
GAGGTCAACAAGAATAGAGCTGTTACACCTTGGACACTTTGGATTGCTTTTAGAGGGCAA
CACATACATGAAACAATGAAGGCAGCCAGCAGCCCTAATCAAGCTTTTCTCTTCATTAAG
CTGATTACTTCTTAGCCCTACATTACTCTTTGAGCCCAACTTGGATGGAGGGGATGATGA
AGACGACGAGGAAGAGGCATTCTGAAGAGGCGAGTTCGCTGTGGTCGCATCTTCTCGTCG
ACATGATAAATATTTGAGCTCATTGTTGACAATTGAGT
■■Homology search results ■■ -
sp_hit_id Q8ZTY6
Definition sp|Q8ZTY6|NOP10_PYRAE Ribosome biogenesis protein Nop10 OS=Pyrobaculum aerophilum
Align length 38
Score (bit) 29.3
E-value 8.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913971|Adiantum capillus-veneris mRNA, clone:
YMU001_000038_D09.
         (458 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8ZTY6|NOP10_PYRAE Ribosome biogenesis protein Nop10 OS=Pyrob...    29   8.6  
sp|Q88VH0|APT_LACPL Adenine phosphoribosyltransferase OS=Lactoba...    29   8.6  

>sp|Q8ZTY6|NOP10_PYRAE Ribosome biogenesis protein Nop10
           OS=Pyrobaculum aerophilum GN=PAE3031 PE=3 SV=1
          Length = 72

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -3

Query: 288 KSLIRAAGCLHCFMYVLPSKSNPKCPRCNSSILVDLSP 175
           KSL+R   C++C  Y L   S  KCPRC  ++ V   P
Sbjct: 2   KSLLRR--CVNCGEYTL---SKDKCPRCGGAVRVPHPP 34


>sp|Q88VH0|APT_LACPL Adenine phosphoribosyltransferase
           OS=Lactobacillus plantarum GN=apt PE=3 SV=1
          Length = 172

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -1

Query: 146 IIAYKSLHYRDKLIDYDMLS 87
           ++  K LH RDK+ DYDMLS
Sbjct: 149 LVELKELHGRDKIKDYDMLS 168
tr_hit_id A9S7A2
Definition tr|A9S7A2|A9S7A2_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 47
Score (bit) 48.5
E-value 0.0002
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913971|Adiantum capillus-veneris mRNA, clone:
YMU001_000038_D09.
         (458 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9S7A2|A9S7A2_PHYPA Predicted protein OS=Physcomitrella paten...    49   2e-04
tr|A7QD65|A7QD65_VITVI Chromosome undetermined scaffold_80, whol...    47   5e-04
tr|A9RXE5|A9RXE5_PHYPA Predicted protein OS=Physcomitrella paten...    47   6e-04
tr|Q94CV6|Q94CV6_ORYSJ Putative uncharacterized protein P0423B08...    46   0.001
tr|Q6F2M0|Q6F2M0_ORYSJ Putative uncharacterized protein OSJNBa00...    46   0.001
tr|B8A711|B8A711_ORYSI Putative uncharacterized protein OS=Oryza...    46   0.001
tr|B6TX28|B6TX28_MAIZE Putative uncharacterized protein OS=Zea m...    46   0.001
tr|A3B4H5|A3B4H5_ORYSJ Putative uncharacterized protein OS=Oryza...    46   0.001
tr|A9SNJ7|A9SNJ7_PHYPA Predicted protein OS=Physcomitrella paten...    45   0.002
tr|B7FH31|B7FH31_MEDTR Putative uncharacterized protein OS=Medic...    45   0.002
tr|A7PP69|A7PP69_VITVI Chromosome chr8 scaffold_23, whole genome...    44   0.003
tr|A5BPL0|A5BPL0_VITVI Putative uncharacterized protein OS=Vitis...    44   0.003
tr|Q9FNI1|Q9FNI1_ARATH Gb|AAF02129.1 (Putative B-type cyclin) (P...    44   0.004
tr|Q9FMS4|Q9FMS4_ARATH Gb|AAF02129.1 (AT5g22270/MWD9_5) OS=Arabi...    44   0.004
tr|Q8LB42|Q8LB42_ARATH Putative uncharacterized protein OS=Arabi...    44   0.004
tr|Q9SRN4|Q9SRN4_ARATH T19F11.1 protein (Putative uncharacterize...    44   0.005
tr|Q10FP1|Q10FP1_ORYSJ Expressed protein OS=Oryza sativa subsp. ...    44   0.005
tr|B6SRI9|B6SRI9_MAIZE Putative uncharacterized protein OS=Zea m...    44   0.005
tr|A9SJA2|A9SJA2_PHYPA Predicted protein OS=Physcomitrella paten...    44   0.005
tr|B7ZY20|B7ZY20_MAIZE Putative uncharacterized protein OS=Zea m...    43   0.007
tr|B6U7M5|B6U7M5_MAIZE Putative uncharacterized protein OS=Zea m...    42   0.015
tr|A9TP00|A9TP00_PHYPA Predicted protein OS=Physcomitrella paten...    42   0.015
tr|Q9SA48|Q9SA48_ARATH >F3O9.30 (At1g16500) (Expressed protein) ...    42   0.020
tr|B6SHT4|B6SHT4_MAIZE Putative uncharacterized protein OS=Zea m...    42   0.020
tr|A9PG94|A9PG94_POPTR Putative uncharacterized protein OS=Popul...    41   0.026
tr|Q7XTG2|Q7XTG2_ORYSJ Os04g0415000 protein OS=Oryza sativa subs...    41   0.034
tr|Q6EU57|Q6EU57_ORYSJ Os02g0536500 protein OS=Oryza sativa subs...    41   0.034
tr|Q01LE9|Q01LE9_ORYSA H0622F05.5 protein OS=Oryza sativa GN=H06...    41   0.034
tr|B8ATP0|B8ATP0_ORYSI Putative uncharacterized protein OS=Oryza...    41   0.034
tr|A9PEE5|A9PEE5_POPTR Putative uncharacterized protein OS=Popul...    41   0.034

>tr|A9S7A2|A9S7A2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_75503 PE=4 SV=1
          Length = 391

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 19/47 (40%), Positives = 29/47 (61%)
 Frame = -3

Query: 318 GLRSNQLNEEKSLIRAAGCLHCFMYVLPSKSNPKCPRCNSSILVDLS 178
           GLR  +   +K+ +    C  C MYV+ ++SNPKCPRC S + +D +
Sbjct: 328 GLRLCEAESKKNALVMGACTQCLMYVMLNRSNPKCPRCQSEVPLDFT 374


>tr|A7QD65|A7QD65_VITVI Chromosome undetermined scaffold_80, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00035710001 PE=4 SV=1
          Length = 244

 Score = 47.0 bits (110), Expect = 5e-04
 Identities = 20/31 (64%), Positives = 23/31 (74%)
 Frame = -3

Query: 285 SLIRAAGCLHCFMYVLPSKSNPKCPRCNSSI 193
           SL   AGC  C +YVL SK+NPKCPRCNS +
Sbjct: 197 SLYFTAGCPGCLLYVLISKNNPKCPRCNSVV 227


>tr|A9RXE5|A9RXE5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_71802 PE=4 SV=1
          Length = 454

 Score = 46.6 bits (109), Expect = 6e-04
 Identities = 25/61 (40%), Positives = 39/61 (63%), Gaps = 7/61 (11%)
 Frame = -3

Query: 324 NVGLRSNQLNEEKSLIRAA------GCLHCFMYVLPSKSNPKCPRC-NSSILVDLSPLTI 166
           +VG++S  + E+   +  A      GC  CFMYV+ SKS+P CP+C N+ +L++L P TI
Sbjct: 277 DVGVKSQVVPEKSETLAHAEVMVTVGCKSCFMYVMLSKSHPSCPKCGNADVLLEL-PSTI 335

Query: 165 H 163
           +
Sbjct: 336 Y 336


>tr|Q94CV6|Q94CV6_ORYSJ Putative uncharacterized protein P0423B08.22
           (Os01g0863500 protein) OS=Oryza sativa subsp. japonica
           GN=P0423B08.22 PE=4 SV=1
          Length = 129

 Score = 45.8 bits (107), Expect = 0.001
 Identities = 16/31 (51%), Positives = 25/31 (80%)
 Frame = -3

Query: 270 AGCLHCFMYVLPSKSNPKCPRCNSSILVDLS 178
           AGC  C MYV+ S+ +P+CPRC+S++L+D +
Sbjct: 88  AGCPRCMMYVMLSREDPRCPRCHSAVLLDFN 118


>tr|Q6F2M0|Q6F2M0_ORYSJ Putative uncharacterized protein
           OSJNBa0020H14.5 (Putative uncharacterized protein
           B1110B01.10) OS=Oryza sativa subsp. japonica
           GN=OSJNBa0020H14.5 PE=4 SV=1
          Length = 621

 Score = 45.8 bits (107), Expect = 0.001
 Identities = 16/31 (51%), Positives = 25/31 (80%)
 Frame = -3

Query: 270 AGCLHCFMYVLPSKSNPKCPRCNSSILVDLS 178
           AGC  C MYV+ S+ +PKCP+C+S++L+D +
Sbjct: 148 AGCPRCMMYVMLSREDPKCPKCHSTVLLDFN 178


>tr|B8A711|B8A711_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_04536 PE=4 SV=1
          Length = 129

 Score = 45.8 bits (107), Expect = 0.001
 Identities = 16/31 (51%), Positives = 25/31 (80%)
 Frame = -3

Query: 270 AGCLHCFMYVLPSKSNPKCPRCNSSILVDLS 178
           AGC  C MYV+ S+ +P+CPRC+S++L+D +
Sbjct: 88  AGCPRCMMYVMLSREDPRCPRCHSAVLLDFN 118


>tr|B6TX28|B6TX28_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 124

 Score = 45.8 bits (107), Expect = 0.001
 Identities = 16/31 (51%), Positives = 25/31 (80%)
 Frame = -3

Query: 270 AGCLHCFMYVLPSKSNPKCPRCNSSILVDLS 178
           AGC  C MYV+ S+ +P+CPRC++++L+D S
Sbjct: 83  AGCPRCMMYVMLSREDPRCPRCHNAVLLDFS 113


>tr|A3B4H5|A3B4H5_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_017947 PE=4 SV=1
          Length = 162

 Score = 45.8 bits (107), Expect = 0.001
 Identities = 16/31 (51%), Positives = 25/31 (80%)
 Frame = -3

Query: 270 AGCLHCFMYVLPSKSNPKCPRCNSSILVDLS 178
           AGC  C MYV+ S+ +PKCP+C+S++L+D +
Sbjct: 110 AGCPRCMMYVMLSREDPKCPKCHSTVLLDFN 140


>tr|A9SNJ7|A9SNJ7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_165908 PE=4 SV=1
          Length = 418

 Score = 45.1 bits (105), Expect = 0.002
 Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
 Frame = -3

Query: 312 RSNQLNEEKSLIRAAGCLHCFMYVLPSKSNPKCPRC-NSSILVDL 181
           R +Q+ E   ++   GC  C MYV+ SKS+P CP+C N+ +L++L
Sbjct: 348 RKHQVPENGEVMVTVGCKSCLMYVMLSKSHPSCPKCGNADVLLEL 392


>tr|B7FH31|B7FH31_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=4 SV=1
          Length = 100

 Score = 44.7 bits (104), Expect = 0.002
 Identities = 17/46 (36%), Positives = 30/46 (65%)
 Frame = -3

Query: 321 VGLRSNQLNEEKSLIRAAGCLHCFMYVLPSKSNPKCPRCNSSILVD 184
           V   +   + E + +   GC  C MYV+ S+++PKCP+C+S++L+D
Sbjct: 43  VSSENGSSSPEATSMLLVGCPRCLMYVMLSENDPKCPKCHSTVLLD 88