BP913985 |
Clone id |
YMU001_000038_E12 |
Library |
YMU01 |
Length |
522 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000038_E12. |
Accession |
BP913985 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL807Contig1 |
Sequence |
GCCATAGTTTGTGATCGAGTGTTTAGACACAGCTTTGTGTTTTTGTATCCACTCTCGCAA GAGTGAGGAGTTGTGTATCTTTCTTTGCTTGAGACAGTGGTTTGCTCTTGGGTGGGAGAG TCTTGTGATCTCGAGCATTGTTTGCCATAGTCTTGGCATGGAGTCACTTCAGGTTAGAGG CGGTTCTTGTTCACGATCGCGACTGACATGTTGGCATGGCGGCCATGATGGGCATATTAG GCGTCGTTGCTTCAGGCGTATGAGGCAACGAAAGAGGCAGATGCATGGTGCTACTAGCAG GACACATGCTAGAGTGTGTGCATGTGACGGACATGTCACTTTTGAATCTAGCTTGCCTTC GAACTACTTTGTGTCTTGGGATAGCACATTGTCTACACGTTTTCTACTAGACGAGCATGC AGTTTTTCACGTGACGCCACGTCGTGATTTGTTTTGCTCTTTCTCTAGTGGGAGACTTGG TTGTGTGCAGTTTGTTGATAGTTTAGCATATGACATAAGAGG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
A7XYH5 |
Definition |
sp|A7XYH5|SOBP_CHICK Sine oculis-binding protein homolog OS=Gallus gallus |
Align length |
27 |
Score (bit) |
32.3 |
E-value |
1.4 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B8YLY7 |
Definition |
tr|B8YLY7|B8YLY7_LOTJA Gag-Pol polyprotein OS=Lotus japonicus |
Align length |
118 |
Score (bit) |
42.0 |
E-value |
0.018 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP913985|Adiantum capillus-veneris mRNA, clone: YMU001_000038_E12. (522 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|B8YLY7|B8YLY7_LOTJA Gag-Pol polyprotein OS=Lotus japonicus PE... 42 0.018 tr|Q7XLX2|Q7XLX2_ORYSA OSJNBa0042I15.19 protein OS=Oryza sativa ... 38 0.34 tr|Q2QUM8|Q2QUM8_ORYSJ Retrotransposon protein, putative, Ty1-co... 38 0.34 tr|O81903|O81903_ARATH Putative transposable element OS=Arabidop... 38 0.34 tr|B8YLY6|B8YLY6_MEDTR Gag-Pol polyprotein OS=Medicago truncatul... 37 0.77 tr|B8YLY4|B8YLY4_MEDTR Gag-Pol polyprotein OS=Medicago truncatul... 37 0.77 tr|B8YLY3|B8YLY3_MEDTR Gag-Pol polyprotein OS=Medicago truncatul... 37 0.77 tr|B8YLY5|B8YLY5_MEDTR Gag-Pol polyprotein OS=Medicago truncatul... 36 1.00 tr|A5C3L0|A5C3L0_VITVI Putative uncharacterized protein OS=Vitis... 36 1.00 tr|A5C2E5|A5C2E5_VITVI Putative uncharacterized protein OS=Vitis... 36 1.00 tr|A5BJP3|A5BJP3_VITVI Putative uncharacterized protein (Fragmen... 36 1.00 tr|A5B4R8|A5B4R8_VITVI Putative uncharacterized protein OS=Vitis... 36 1.00 tr|A5BM67|A5BM67_VITVI Putative uncharacterized protein (Fragmen... 36 1.3 tr|Q4YH55|Q4YH55_PLABE Putative uncharacterized protein (Fragmen... 36 1.3 tr|Q0D5X2|Q0D5X2_ORYSJ Os07g0528100 protein (Fragment) OS=Oryza ... 35 1.7 tr|B7EQQ7|B7EQQ7_ORYSJ cDNA clone:J023111N02, full insert sequen... 35 1.7 tr|A7R7H0|A7R7H0_VITVI Chromosome undetermined scaffold_1774, wh... 35 1.7 tr|A5BM11|A5BM11_VITVI Putative uncharacterized protein OS=Vitis... 35 1.7 tr|A5AIP8|A5AIP8_VITVI Putative uncharacterized protein OS=Vitis... 35 1.7 tr|Q4YJ62|Q4YJ62_PLABE Putative uncharacterized protein (Fragmen... 35 2.9 tr|Q6GPQ1|Q6GPQ1_XENLA LOC443616 protein (Fragment) OS=Xenopus l... 34 3.8 tr|Q9SJU6|Q9SJU6_ARATH Putative retroelement pol polyprotein OS=... 34 3.8 tr|A7PYR8|A7PYR8_VITVI Chromosome chr12 scaffold_38, whole genom... 34 3.8 tr|A7SV25|A7SV25_NEMVE Predicted protein OS=Nematostella vectens... 31 4.8 tr|Q7XEC4|Q7XEC4_ORYSJ Retrotransposon protein, putative, Ty1-co... 34 5.0 tr|A5AN26|A5AN26_VITVI Putative uncharacterized protein OS=Vitis... 34 5.0 tr|B4HIY2|B4HIY2_DROSE GM24976 OS=Drosophila sechellia GN=GM2497... 34 5.0 tr|Q0C2R3|Q0C2R3_HYPNA Putative uncharacterized protein OS=Hypho... 33 6.5 tr|Q7XUF5|Q7XUF5_ORYSJ OJ991113_30.13 protein OS=Oryza sativa su... 33 6.5 tr|Q60DG5|Q60DG5_ORYSJ Putative polyprotein OS=Oryza sativa subs... 33 6.5
>tr|B8YLY7|B8YLY7_LOTJA Gag-Pol polyprotein OS=Lotus japonicus PE=4 SV=1 Length = 1305
Score = 42.0 bits (97), Expect = 0.018 Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 2/118 (1%) Frame = +2
Query: 116 ESLVISSIVCHSLGMESLQVRGGSCSRSR--LTCWHGGHDGHIXXXXXXXXXXXXXQMHG 289 E+L ++ G Q G S SR + L C++ G GH+ Sbjct: 197 EALTVTRGRSTERGPSGSQNHGRSTSRRKTNLKCYNCGKRGHLKKDCWSNKKSGEKSSEA 256
Query: 290 ATSRTHARVCACDGHVTFESSLPSNYFVSWDSTLSTRFLLDEHAVFHVTPRRDLFCSF 463 +TS+ + DG V + + S + L+ +++D A +H+TPRRD FC++ Sbjct: 257 STSQGCVASTSDDGEVLYSEAAVST---KGKNRLTDVWIVDSGATWHMTPRRDWFCTY 311
>tr|Q7XLX2|Q7XLX2_ORYSA OSJNBa0042I15.19 protein OS=Oryza sativa GN=OSJNBa0042I15.19 PE=4 SV=3 Length = 478
Score = 37.7 bits (86), Expect = 0.34 Identities = 16/37 (43%), Positives = 23/37 (62%) Frame = +2
Query: 401 FLLDEHAVFHVTPRRDLFCSFSSGRLGCVQFVDSLAY 511 ++LD + FHVTPR++ F S+ SG G V D +Y Sbjct: 330 WILDSASSFHVTPRKEWFSSYKSGEFGFVYLGDDTSY 366
>tr|Q2QUM8|Q2QUM8_ORYSJ Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. japonica GN=LOC_Os12g15720 PE=4 SV=2 Length = 407
Score = 37.7 bits (86), Expect = 0.34 Identities = 16/37 (43%), Positives = 23/37 (62%) Frame = +2
Query: 401 FLLDEHAVFHVTPRRDLFCSFSSGRLGCVQFVDSLAY 511 ++LD + FHVTPR++ F S+ SG G V D +Y Sbjct: 259 WILDSASSFHVTPRKEWFSSYKSGEFGFVYLGDDTSY 295
>tr|O81903|O81903_ARATH Putative transposable element OS=Arabidopsis thaliana GN=T6K22.90 PE=2 SV=1 Length = 1308
Score = 37.7 bits (86), Expect = 0.34 Identities = 24/97 (24%), Positives = 37/97 (38%) Frame = +2
Query: 176 RGGSCSRSRLTCWHGGHDGHIXXXXXXXXXXXXXQMHGATSRTHARVCACDGHVTFESSL 355 RG S S+SRLTCW +GH+ + G V E + Sbjct: 246 RGRSNSKSRLTCWFCKKEGHVKKDCYAGKRKLENEGQGKAG------------VITEKLV 293
Query: 356 PSNYFVSWDSTLSTRFLLDEHAVFHVTPRRDLFCSFS 466 S +D ++++D +H+T R D F F+ Sbjct: 294 YSEALSMYDQEAKDKWVIDSGCTYHMTSRMDWFSEFN 330
>tr|B8YLY6|B8YLY6_MEDTR Gag-Pol polyprotein OS=Medicago truncatula PE=4 SV=1 Length = 1305
Score = 36.6 bits (83), Expect = 0.77 Identities = 29/123 (23%), Positives = 50/123 (40%), Gaps = 2/123 (1%) Frame = +2
Query: 155 GMESLQVRGGSCSRSR--LTCWHGGHDGHIXXXXXXXXXXXXXQMHGATSRTHARVCACD 328 G Q G S SR + + C+ G GH+ +TS+ + D Sbjct: 210 GPSGSQNHGRSKSRRKKNIKCYGCGMKGHVKKECWNIKKNGEKNSEASTSQGCVASTSDD 269
Query: 329 GHVTFESSLPSNYFVSWDSTLSTRFLLDEHAVFHVTPRRDLFCSFSSGRLGCVQFVDSLA 508 G + + + S+ + L+ +++D A +H+TP RD F S+ G V + A Sbjct: 270 GEILYSEAATSS---KGERRLNDVWIMDSGATWHMTPHRDWFYSYEPISEGSVYMGNDHA 326
Query: 509 YDI 517 +I Sbjct: 327 LEI 329
>tr|B8YLY4|B8YLY4_MEDTR Gag-Pol polyprotein OS=Medicago truncatula PE=4 SV=1 Length = 1305
Score = 36.6 bits (83), Expect = 0.77 Identities = 29/123 (23%), Positives = 50/123 (40%), Gaps = 2/123 (1%) Frame = +2
Query: 155 GMESLQVRGGSCSRSR--LTCWHGGHDGHIXXXXXXXXXXXXXQMHGATSRTHARVCACD 328 G Q G S SR + + C+ G GH+ +TS+ + D Sbjct: 210 GPSGSQNHGRSKSRRKKNIKCYGCGMKGHVKKECWNIKKNGEKNSEASTSQGCVASTSDD 269
Query: 329 GHVTFESSLPSNYFVSWDSTLSTRFLLDEHAVFHVTPRRDLFCSFSSGRLGCVQFVDSLA 508 G + + + S+ + L+ +++D A +H+TP RD F S+ G V + A Sbjct: 270 GEILYSEAATSS---KGERRLNDVWIMDSGATWHMTPHRDWFFSYEPISEGSVYMGNDHA 326
Query: 509 YDI 517 +I Sbjct: 327 LEI 329
>tr|B8YLY3|B8YLY3_MEDTR Gag-Pol polyprotein OS=Medicago truncatula PE=4 SV=1 Length = 1305
Score = 36.6 bits (83), Expect = 0.77 Identities = 29/123 (23%), Positives = 50/123 (40%), Gaps = 2/123 (1%) Frame = +2
Query: 155 GMESLQVRGGSCSRSR--LTCWHGGHDGHIXXXXXXXXXXXXXQMHGATSRTHARVCACD 328 G Q G S SR + + C+ G GH+ +TS+ + D Sbjct: 210 GPSGSQNHGRSKSRRKKNIKCYGCGMKGHVKKECWNIKKNGEKNSEASTSQGCVASTSDD 269
Query: 329 GHVTFESSLPSNYFVSWDSTLSTRFLLDEHAVFHVTPRRDLFCSFSSGRLGCVQFVDSLA 508 G + + + S+ + L+ +++D A +H+TP RD F S+ G V + A Sbjct: 270 GEILYSEAATSS---KGERRLNDVWIMDSGATWHMTPHRDWFFSYEPISEGSVYMGNDHA 326
Query: 509 YDI 517 +I Sbjct: 327 LEI 329
>tr|B8YLY5|B8YLY5_MEDTR Gag-Pol polyprotein OS=Medicago truncatula PE=4 SV=1 Length = 1305
Score = 36.2 bits (82), Expect = 1.00 Identities = 25/114 (21%), Positives = 46/114 (40%) Frame = +2
Query: 176 RGGSCSRSRLTCWHGGHDGHIXXXXXXXXXXXXXQMHGATSRTHARVCACDGHVTFESSL 355 R S ++ + C+ G GH+ TS+ + DG + + + Sbjct: 219 RSKSRRKNNIKCYGCGMKGHVKKECWNNKKNGEKNSEATTSQGCVASTSDDGEILYSEAA 278
Query: 356 PSNYFVSWDSTLSTRFLLDEHAVFHVTPRRDLFCSFSSGRLGCVQFVDSLAYDI 517 S+ + L+ +++D A +H+TP RD F S+ G V + A +I Sbjct: 279 TSS---EGERQLNDVWIMDSGATWHMTPHRDWFYSYEPISEGSVYMGNDHALEI 329
>tr|A5C3L0|A5C3L0_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_007384 PE=4 SV=1 Length = 1317
Score = 36.2 bits (82), Expect = 1.00 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 6/50 (12%) Frame = +2
Query: 359 SNYFVSWDSTL------STRFLLDEHAVFHVTPRRDLFCSFSSGRLGCVQ 490 S++ + +DS + T +++D A H TPR+D F S++SG G V+ Sbjct: 251 SDFLIVYDSDVVNFACQETSWVIDSGASIHATPRKDFFTSYTSGDFGSVR 300
>tr|A5C2E5|A5C2E5_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_029099 PE=4 SV=1 Length = 649
Score = 36.2 bits (82), Expect = 1.00 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 6/50 (12%) Frame = +2
Query: 359 SNYFVSWDSTL------STRFLLDEHAVFHVTPRRDLFCSFSSGRLGCVQ 490 S++ + +DS + T +++D A H TPR+D F S++SG G V+ Sbjct: 227 SDFLIVYDSDVVNFSCQETSWVIDSGASIHATPRKDFFTSYTSGDFGSVR 276
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