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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913987
Clone id YMU001_000038_F02
Library
Length 461
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000038_F02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TTTGTTTTTTTTTTTGGCATATAATAGTTGCTTGCTTATTTGCCAAAGACAACTGACATT
GTACATTTTGCAAGAACATAGATCCAGCTCTGTCTTTCTGAAGCTGGTGAGGGCTCAATC
GACCTTGCAAAAGTGCCTTGTGTACAAATATCTTAAGTGGCATCAGCAGAAAACAAGGGC
TTGCGAGGGGGTAACAGAAGATAAGAAAGCATGCATTTACATGACCCTCACTTATTTCAC
AAATCATATAAAGAAACACAGCGAACTGCTCTGACTCACTCAAAAGAGGCACATAATCTG
ACAATCCTTATGCTAGAGCTAAAATAGCAGTTGTGCGCACCACAGGGAAAAAAAACCTAG
CTTTGTCCAGTAGACATATTCTCCTGGTCCAATGATACATATGGGCCGTCGAGGCTCCGC
TTTACCCAAAGCCTAAACAGTGCTTCTCATGGTGCCTCTCC
■■Homology search results ■■ -
sp_hit_id Q03271
Definition sp|Q03271|PO13_NASVI Retrovirus-related Pol polyprotein from type-1 retrotransposable element R1 3 (Fragment) OS=Nasonia vitripennis
Align length 33
Score (bit) 31.2
E-value 2.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913987|Adiantum capillus-veneris mRNA, clone:
YMU001_000038_F02.
         (446 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q03271|PO13_NASVI Retrovirus-related Pol polyprotein from typ...    31   2.1  

>sp|Q03271|PO13_NASVI Retrovirus-related Pol polyprotein from type-1
           retrotransposable element R1 3 (Fragment) OS=Nasonia
           vitripennis PE=4 SV=1
          Length = 383

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 4/33 (12%)
 Frame = -1

Query: 116 FARSIEPSPA----SERQSWIYVLAKCTMSVVF 30
           F+R++  SPA    +ER+ WI+VL +C M   F
Sbjct: 297 FSRNLSNSPACACGTEREDWIHVLCECDMYAAF 329
tr_hit_id B1KYL9
Definition tr|B1KYL9|B1KYL9_CLOBM Transcriptional regulator, MarR family OS=Clostridium botulinum (strain Loch Maree / Type A3)
Align length 77
Score (bit) 33.9
E-value 4.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913987|Adiantum capillus-veneris mRNA, clone:
YMU001_000038_F02.
         (446 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B1KYL9|B1KYL9_CLOBM Transcriptional regulator, MarR family OS...    34   4.1  
tr|A7FSQ9|A7FSQ9_CLOB1 Transcriptional regulator, MarR family OS...    34   4.1  
tr|A5I0K4|A5I0K4_CLOBH MarR-family transcriptional regulator OS=...    34   4.1  
tr|B1IHZ5|B1IHZ5_CLOBK Transcriptional regulator, MarR family OS...    33   5.3  
tr|A1T9B9|A1T9B9_MYCVP Putative uncharacterized protein OS=Mycob...    33   9.1  
tr|A0BIH8|A0BIH8_PARTE Chromosome undetermined scaffold_11, whol...    33   9.1  

>tr|B1KYL9|B1KYL9_CLOBM Transcriptional regulator, MarR family
           OS=Clostridium botulinum (strain Loch Maree / Type A3)
           GN=CLK_0455 PE=4 SV=1
          Length = 153

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 16/77 (20%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
 Frame = +2

Query: 23  ICQRQLTLYILQEHRS----SSVFLKLVRAQSTLQKCLVYKYLKWHQQKTRACEGVTEDK 190
           IC++ L   ++ +++       ++ KL ++   L KC   K+ KW ++     + V  ++
Sbjct: 69  ICKKLLNSKLIDKYKKPENDKEIYFKLTKSGEELYKCHEIKHKKWEERNNNFFKNVDREE 128

Query: 191 KACIYMTLTYFTNHIKK 241
           +  +   L  F N + K
Sbjct: 129 QEIVASFLKKFNNFLDK 145


>tr|A7FSQ9|A7FSQ9_CLOB1 Transcriptional regulator, MarR family
           OS=Clostridium botulinum (strain ATCC 19397 / Type A)
           GN=CLB_1052 PE=4 SV=1
          Length = 156

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 16/77 (20%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
 Frame = +2

Query: 23  ICQRQLTLYILQEHRS----SSVFLKLVRAQSTLQKCLVYKYLKWHQQKTRACEGVTEDK 190
           IC++ L   ++ +++       ++ KL ++   L KC   K+ KW ++     + V  ++
Sbjct: 72  ICKKLLNNKLIDKYKKPENDKEIYFKLTKSGEELYKCHEIKHKKWEERNNNFFKNVDREE 131

Query: 191 KACIYMTLTYFTNHIKK 241
           +  +   L  F N + K
Sbjct: 132 QEIVVSFLKKFNNFLDK 148


>tr|A5I0K4|A5I0K4_CLOBH MarR-family transcriptional regulator
           OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC
           13319 / Type A) GN=CBO1012 PE=4 SV=1
          Length = 156

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 16/77 (20%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
 Frame = +2

Query: 23  ICQRQLTLYILQEHRS----SSVFLKLVRAQSTLQKCLVYKYLKWHQQKTRACEGVTEDK 190
           IC++ L   ++ +++       ++ KL ++   L KC   K+ KW ++     + V  ++
Sbjct: 72  ICKKLLNNKLIDKYKKPENDKEIYFKLTKSGEELYKCHEIKHKKWEERNNNFFKNVDREE 131

Query: 191 KACIYMTLTYFTNHIKK 241
           +  +   L  F N + K
Sbjct: 132 QEIVVSFLKKFNNFLDK 148


>tr|B1IHZ5|B1IHZ5_CLOBK Transcriptional regulator, MarR family
           OS=Clostridium botulinum (strain Okra / Type B1)
           GN=CLD_3554 PE=4 SV=1
          Length = 156

 Score = 33.5 bits (75), Expect = 5.3
 Identities = 16/77 (20%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
 Frame = +2

Query: 23  ICQRQLTLYILQEHRS----SSVFLKLVRAQSTLQKCLVYKYLKWHQQKTRACEGVTEDK 190
           IC++ L   ++ +++       ++ KL ++   L KC   K+ KW ++     + V  ++
Sbjct: 72  ICKKLLNNKLIDKYKKPENDKEIYFKLTKSGEELYKCHEIKHKKWEERNNNFFKNVDREE 131

Query: 191 KACIYMTLTYFTNHIKK 241
           +  +   L  F N + K
Sbjct: 132 QEIVASFLKKFNNFLDK 148


>tr|A1T9B9|A1T9B9_MYCVP Putative uncharacterized protein
           OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1)
           GN=Mvan_2963 PE=3 SV=1
          Length = 170

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
 Frame = -1

Query: 197 MLSYLLLPPRKPLFSADAT*DICTQGTFARSIEPSPASERQSWIYVLAKCT---MSVVFG 27
           M S+ L PPR  L +A A   +      A S  P+P  + Q +I   A+CT   + V+FG
Sbjct: 1   MSSHRLSPPRAALAAAAAFVSVPVMLVAAPSASPAPPYDDQGYIDSTARCTAPDIMVLFG 60

Query: 26  K*ASN 12
             AS+
Sbjct: 61  STASS 65


>tr|A0BIH8|A0BIH8_PARTE Chromosome undetermined scaffold_11, whole
           genome shotgun sequence OS=Paramecium tetraurelia
           GN=GSPATT00004717001 PE=4 SV=1
          Length = 617

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 21/66 (31%), Positives = 34/66 (51%)
 Frame = +2

Query: 17  LLICQRQLTLYILQEHRSSSVFLKLVRAQSTLQKCLVYKYLKWHQQKTRACEGVTEDKKA 196
           +L  QR L LY  Q+  S   + KL R Q+   +  +YK L   +QK +  E   E++K 
Sbjct: 199 ILQLQRILKLYKTQKFDSYLAYRKLTRDQNLDFEQSLYKQLDILRQKKKQLEAQMEEEKR 258

Query: 197 CIYMTL 214
           C  +++
Sbjct: 259 CYKLSI 264