BP913988 |
Clone id |
YMU001_000038_F03 |
Library |
YMU01 |
Length |
477 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000038_F03. |
Accession |
BP913988 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
CAAAGCCGACTGGACTTCAAACAACCTTGCAACTGTGCTACCCACCTACGCAGAGAGAGA GTCCTTCTCTATTTATTGGACCTCTGCTTTCGGTTTCTCCGTCTCCGTTTCCTTGAAATC GCAGGTTTTGCTGCTGCAGTTTCTCTCGCGCGCCTCTTTTTCTTGTTGGGCTCCCGTATT TGGGCGTTCGTGTTGTGGGTTTCCCTCTCCTCTTTAACTCCGTCTGCCTTTGCTCCGTAT TGCCGCCCTTCACGGAACAATCCGCATGCCGGAAACACGCAGGTCCTACTTTTGCGTATC CCTTCTTGTGAACCTCTGCATGAGCCATTGTAAGTGCCGGAGGCTATACTTTACTTCCGG GCAATTGCTTCGAGCAGTCCTCATCCACCAATTCTCCTTTTTGAATCTCCTCTCCAATCC TTTGAAGATCTGCCCTAAACATAATTTCTTCCCATTGATATGGACTCAGCAGTGTCT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9K0B0 |
Definition |
sp|Q9K0B0|RLUD_NEIMB Ribosomal large subunit pseudouridine synthase D OS=Neisseria meningitidis serogroup B |
Align length |
72 |
Score (bit) |
34.7 |
E-value |
0.22 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B6MP21 |
Definition |
tr|B6MP21|B6MP21_BRAFL Putative uncharacterized protein OS=Branchiostoma floridae |
Align length |
59 |
Score (bit) |
38.5 |
E-value |
0.17 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP913988|Adiantum capillus-veneris mRNA, clone: YMU001_000038_F03. (477 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|B6MP21|B6MP21_BRAFL Putative uncharacterized protein OS=Branc... 39 0.17 tr|A1CRN0|A1CRN0_ASPCL Putative uncharacterized protein OS=Asper... 37 0.49 tr|A9GBV3|A9GBV3_SORC5 Ribosomal large subunit pseudouridine syn... 37 0.64 tr|A9M358|A9M358_NEIM0 Ribosomal large subunit pseudouridine syn... 35 1.9 tr|A1KSW6|A1KSW6_NEIMF Pseudouridine synthase OS=Neisseria menin... 34 3.2 tr|A6GRE2|A6GRE2_9BURK Periplasmic sensor signal transduction hi... 34 3.2 tr|B1S5Z8|B1S5Z8_9BIFI Putative uncharacterized protein OS=Bifid... 33 5.4 tr|Q7NVZ8|Q7NVZ8_CHRVO Pseudouridine synthase OS=Chromobacterium... 33 5.4 tr|B4RDX5|B4RDX5_PHEZH Ribosomal large subunit pseudouridine syn... 33 5.4 tr|B7Y1R3|B7Y1R3_RUMHA Putative uncharacterized protein OS=Blaut... 33 5.4 tr|Q296R0|Q296R0_DROPS GA22027 OS=Drosophila pseudoobscura pseud... 33 5.4 tr|Q5KMH3|Q5KMH3_CRYNE Putative uncharacterized protein OS=Crypt... 33 5.4 tr|Q1DL06|Q1DL06_COCIM Putative uncharacterized protein OS=Cocci... 33 5.4 tr|A2QMX7|A2QMX7_ASPNC Function: syg1 of S. cerevisiae mediates ... 33 5.4 tr|Q4TCA2|Q4TCA2_TETNG Chromosome undetermined SCAF7039, whole g... 33 7.0 tr|Q5F9V9|Q5F9V9_NEIG1 Pseudouridine synthase OS=Neisseria gonor... 33 7.1 tr|B4RJW3|B4RJW3_NEIG2 RluD OS=Neisseria gonorrhoeae (strain NCC... 33 7.1 tr|A8JJE3|A8JJE3_CHLRE Serine/threonine protein kinase 6 (Fragme... 33 7.1 tr|Q015M1|Q015M1_OSTTA Chromosome 07 contig 1, DNA sequence OS=O... 33 9.2 tr|Q9AAY9|Q9AAY9_CAUCR Pseudouridine synthase OS=Caulobacter cre... 33 9.2 tr|Q08YE1|Q08YE1_STIAU Putative uncharacterized protein OS=Stigm... 33 9.2 tr|B8GZR6|B8GZR6_CAUCR Ribosomal large subunit pseudouridine syn... 33 9.2 tr|B4VB67|B4VB67_9ACTO Putative uncharacterized protein OS=Strep... 33 9.2 tr|A4QVT0|A4QVT0_MAGGR Putative uncharacterized protein OS=Magna... 33 9.2
>tr|B6MP21|B6MP21_BRAFL Putative uncharacterized protein OS=Branchiostoma floridae GN=BRAFLDRAFT_114851 PE=4 SV=1 Length = 298
Score = 38.5 bits (88), Expect = 0.17 Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 3/59 (5%) Frame = -3
Query: 253 VKGGNTEQRQTELKRRGKPTTRTPKY---GSPTRKRGAREKLQQQNLRFQGNGDGETES 86 ++GG +Q + +RRG P RT G+P R RGAR++LQ Q + +G+++S Sbjct: 25 LRGGQEQQPADDGQRRGAPRPRTDAERAAGAPRRVRGARQRLQAARRINQQDSEGDSDS 83
>tr|A1CRN0|A1CRN0_ASPCL Putative uncharacterized protein OS=Aspergillus clavatus GN=ACLA_030340 PE=4 SV=1 Length = 242
Score = 37.0 bits (84), Expect = 0.49 Identities = 21/57 (36%), Positives = 30/57 (52%) Frame = -3
Query: 232 QRQTELKRRGKPTTRTPKYGSPTRKRGAREKLQQQNLRFQGNGDGETESRGPINREG 62 Q + E RR KP T + G+P + R R++ QQQ + QG G G G +N+ G Sbjct: 112 QSKPEPPRRRKPRPTTMENGNPEKPRRRRQRPQQQQQQ-QGGGGGPLPGLGGVNQAG 167
>tr|A9GBV3|A9GBV3_SORC5 Ribosomal large subunit pseudouridine synthase D OS=Sorangium cellulosum (strain So ce56) GN=rluD3 PE=4 SV=1 Length = 345
Score = 36.6 bits (83), Expect = 0.64 Identities = 32/103 (31%), Positives = 47/103 (45%), Gaps = 4/103 (3%) Frame = -3
Query: 361 PGSKV*PPALTMAHAEVHKKGYAKVGPACFRHADCSVKGGNTEQRQTELKRRGK-PTTRT 185 PGS V P + H V ++ +G A A CS++ G T Q + L RG+ P Sbjct: 225 PGSHVAAPRRAVTHVRVIER----LGDAATVVA-CSLETGRTHQIRVHLAERGRTPVLGD 279
Query: 184 PKYGSPTRK---RGAREKLQQQNLRFQGNGDGETESRGPINRE 65 P YG P +K R E+L +Q L + G ++ P+ E Sbjct: 280 PLYGKPPKKPAVRAIAEELGRQALHARVLGFIHPATQKPVRWE 322
>tr|A9M358|A9M358_NEIM0 Ribosomal large subunit pseudouridine synthase D OS=Neisseria meningitidis serogroup C (strain 053442) GN=rluD PE=3 SV=1 Length = 392
Score = 35.0 bits (79), Expect = 1.9 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 11/72 (15%) Frame = -3
Query: 268 HADCSVKGGNTEQRQTELKRRGKPTTRTPKYGSP-----------TRKRGAREKLQQQNL 122 + +CS++ G T Q + ++ P P YG+P + GAR+ L L Sbjct: 263 YIECSLETGRTHQIRVHMREANHPLAADPVYGNPRHPCGDTVKEAVKSLGARQALHAYRL 322
Query: 121 RFQGNGDGETES 86 F GET S Sbjct: 323 SFTHPKTGETRS 334
>tr|A1KSW6|A1KSW6_NEIMF Pseudouridine synthase OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=rluD PE=3 SV=1 Length = 374
Score = 34.3 bits (77), Expect = 3.2 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 11/72 (15%) Frame = -3
Query: 268 HADCSVKGGNTEQRQTELKRRGKPTTRTPKYGSP-----------TRKRGAREKLQQQNL 122 + +CS++ G T Q + ++ P P YG+P + GAR+ L L Sbjct: 245 YIECSLETGRTHQIRVHMREANHPLAGDPVYGNPRHPCSDPVKEAVKSLGARQALHAYRL 304
Query: 121 RFQGNGDGETES 86 F GET S Sbjct: 305 SFTHPESGETVS 316
>tr|A6GRE2|A6GRE2_9BURK Periplasmic sensor signal transduction histidine kinase OS=Limnobacter sp. MED105 GN=LMED105_09780 PE=4 SV=1 Length = 629
Score = 34.3 bits (77), Expect = 3.2 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 3/60 (5%) Frame = +2
Query: 299 SLLVNLCMSHCKCRRLYFTSGQLLRAVLIHQ---FSFLNLLSNPLKICPKHNFFPLIWTQ 469 +L+ +C SH K RRL T +LL A + Q +NL+ N +K P++ P+I Q Sbjct: 494 ALVQEVCRSHPKHRRLKCTLPELLMAKVDRQLLALMLINLIDNAVKYSPENTDIPVILLQ 553
>tr|B1S5Z8|B1S5Z8_9BIFI Putative uncharacterized protein OS=Bifidobacterium dentium ATCC 27678 GN=BIFDEN_02402 PE=4 SV=1 Length = 278
Score = 33.5 bits (75), Expect = 5.4 Identities = 15/40 (37%), Positives = 22/40 (55%) Frame = +1
Query: 118 IAGFAAAVSLARLFFLLGSRIWAFVLWVSLSSLTPSAFAP 237 + GF A +S A +F + GS W F + + L + SA AP Sbjct: 207 VVGFGANISAAIMFIVRGSVYWPFAIMMCLGCIIGSAIAP 246
>tr|Q7NVZ8|Q7NVZ8_CHRVO Pseudouridine synthase OS=Chromobacterium violaceum GN=rluD PE=3 SV=1 Length = 363
Score = 33.5 bits (75), Expect = 5.4 Identities = 13/41 (31%), Positives = 20/41 (48%) Frame = -3
Query: 280 ACFRHADCSVKGGNTEQRQTELKRRGKPTTRTPKYGSPTRK 158 A H +C ++ G T Q + ++ G P P YG+P K Sbjct: 236 ASHSHVECKLETGRTHQIRVHMREAGHPLAGDPVYGNPRHK 276
>tr|B4RDX5|B4RDX5_PHEZH Ribosomal large subunit pseudouridine synthase d OS=Phenylobacterium zucineum (strain HLK1) GN=rluD PE=4 SV=1 Length = 326
Score = 33.5 bits (75), Expect = 5.4 Identities = 19/67 (28%), Positives = 28/67 (41%) Frame = -3
Query: 259 CSVKGGNTEQRQTELKRRGKPTTRTPKYGSPTRKRGAREKLQQQNLRFQGNGDGETESRG 80 C ++ G T Q + L +G P P YGS RE ++Q L Q R Sbjct: 240 CRLETGRTHQIRVHLASKGTPCLGDPTYGSGPPAEAVREAIRQAGLARQALHAAVLGFRH 299
Query: 79 PINREGL 59 P++ + L Sbjct: 300 PVSGQAL 306
>tr|B7Y1R3|B7Y1R3_RUMHA Putative uncharacterized protein OS=Blautia hansenii DSM 20583 GN=BLAHAN_01951 PE=4 SV=1 Length = 919
Score = 33.5 bits (75), Expect = 5.4 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 8/64 (12%) Frame = -3
Query: 250 KGGNTEQRQTELKRR------GKPTTRTPKYGSPTRKR--GAREKLQQQNLRFQGNGDGE 95 +GGN E RQ R G+P R+ G P R G + + N RF GNG+ Sbjct: 160 RGGNGENRQNRPNNRFNGNGEGRPNNRSNGEGRPNNNRYNGNNNQEGRSNNRFNGNGENR 219
Query: 94 TESR 83 +R Sbjct: 220 QGNR 223
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