BP913988
Clone id YMU001_000038_F03
Library
Length 477
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000038_F03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
CAAAGCCGACTGGACTTCAAACAACCTTGCAACTGTGCTACCCACCTACGCAGAGAGAGA
GTCCTTCTCTATTTATTGGACCTCTGCTTTCGGTTTCTCCGTCTCCGTTTCCTTGAAATC
GCAGGTTTTGCTGCTGCAGTTTCTCTCGCGCGCCTCTTTTTCTTGTTGGGCTCCCGTATT
TGGGCGTTCGTGTTGTGGGTTTCCCTCTCCTCTTTAACTCCGTCTGCCTTTGCTCCGTAT
TGCCGCCCTTCACGGAACAATCCGCATGCCGGAAACACGCAGGTCCTACTTTTGCGTATC
CCTTCTTGTGAACCTCTGCATGAGCCATTGTAAGTGCCGGAGGCTATACTTTACTTCCGG
GCAATTGCTTCGAGCAGTCCTCATCCACCAATTCTCCTTTTTGAATCTCCTCTCCAATCC
TTTGAAGATCTGCCCTAAACATAATTTCTTCCCATTGATATGGACTCAGCAGTGTCT
■■Homology search results ■■ -
sp_hit_id Q9K0B0
Definition sp|Q9K0B0|RLUD_NEIMB Ribosomal large subunit pseudouridine synthase D OS=Neisseria meningitidis serogroup B
Align length 72
Score (bit) 34.7
E-value 0.22
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP913988|Adiantum capillus-veneris mRNA, clone:
YMU001_000038_F03.
(477 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9K0B0|RLUD_NEIMB Ribosomal large subunit pseudouridine synth... 35 0.22
sp|Q9JVB6|RLUD_NEIMA Ribosomal large subunit pseudouridine synth... 34 0.29
sp|Q7MAK1|EFTS_WOLSU Elongation factor Ts OS=Wolinella succinoge... 33 0.50
sp|Q6PGW3|CJ076_DANRE UPF0668 protein C10orf76 homolog OS=Danio ... 31 2.5
sp|Q8N655|CJ012_HUMAN Uncharacterized protein C10orf12 OS=Homo s... 31 3.2
sp|Q9Z2Y1|TIM_RAT Protein timeless homolog OS=Rattus norvegicus ... 30 7.2
sp|Q9C0J8|WDR33_HUMAN WD repeat-containing protein 33 OS=Homo sa... 29 9.4
sp|P22308|REPY_ECOLX Replication initiation protein OS=Escherich... 29 9.6

>sp|Q9K0B0|RLUD_NEIMB Ribosomal large subunit pseudouridine synthase
D OS=Neisseria meningitidis serogroup B GN=rluD PE=3
SV=1
Length = 374

Score = 34.7 bits (78), Expect = 0.22
Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 11/72 (15%)
Frame = -3

Query: 268 HADCSVKGGNTEQRQTELKRRGKPTTRTPKYGSP-----------TRKRGAREKLQQQNL 122
+ +CS++ G T Q + ++ P P YG+P + GAR+ L L
Sbjct: 245 YIECSLETGRTHQIRVHMREANHPLAADPVYGNPRHPCGDTVKEAVKSLGARQALHAYRL 304

Query: 121 RFQGNGDGETES 86
F GET S
Sbjct: 305 SFTHPESGETVS 316


>sp|Q9JVB6|RLUD_NEIMA Ribosomal large subunit pseudouridine synthase
D OS=Neisseria meningitidis serogroup A GN=rluD PE=3
SV=1
Length = 374

Score = 34.3 bits (77), Expect = 0.29
Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 11/72 (15%)
Frame = -3

Query: 268 HADCSVKGGNTEQRQTELKRRGKPTTRTPKYGSP-----------TRKRGAREKLQQQNL 122
+ +CS++ G T Q + ++ P P YG+P + GAR+ L L
Sbjct: 245 YIECSLETGRTHQIRVHMREANHPLAGDPVYGNPRHPCGDTVKEAVKSLGARQALHAYRL 304

Query: 121 RFQGNGDGETES 86
F GET S
Sbjct: 305 SFTHPESGETVS 316


>sp|Q7MAK1|EFTS_WOLSU Elongation factor Ts OS=Wolinella succinogenes
GN=tsf PE=3 SV=1
Length = 355

Score = 33.5 bits (75), Expect = 0.50
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = -3

Query: 235 EQRQTELKRRGKPTTRTPKYGSPTRKRGAREKLQQQNLRFQGNGDGETES 86
E+ ELKR GKP R P+Y S + + K Q+Q LR + G+ E+
Sbjct: 222 EKENEELKRLGKPLHRIPEYISRSELTPSVLKNQEQKLREELKAQGKPEA 271


>sp|Q6PGW3|CJ076_DANRE UPF0668 protein C10orf76 homolog OS=Danio
rerio GN=zgc:63733 PE=2 SV=2
Length = 689

Score = 31.2 bits (69), Expect = 2.5
Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +2

Query: 293 CVSLLVNLCMSHCKCR-RLYFTSGQLLRAVLIHQFSFLNLLSNPLKICPKHNFFPL 457
CV ++ L KCR RL++T +L A LI+ FL LSN + KHN F L
Sbjct: 471 CVQIIHKLICYQKKCRVRLHYTWRELWSA-LINLLKFL--LSNETGLLAKHNIFQL 523


>sp|Q8N655|CJ012_HUMAN Uncharacterized protein C10orf12 OS=Homo
sapiens GN=C10orf12 PE=1 SV=1
Length = 1247

Score = 30.8 bits (68), Expect = 3.2
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = -3

Query: 238 TEQRQTELKRRGKPTTRTPKYGSPTRKRGAREKL 137
T ++Q+ K R +P+T+TP+ + RKR + KL
Sbjct: 1201 TNRKQSSGKTRARPSTKTPESSAAQRKRKLKAKL 1234


>sp|Q9Z2Y1|TIM_RAT Protein timeless homolog OS=Rattus norvegicus
GN=Timeless PE=1 SV=1
Length = 1205

Score = 29.6 bits (65), Expect = 7.2
Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 8/86 (9%)
Frame = -3

Query: 430 DLQRIGEEIQKGELVDEDCSKQLPGS--------KV*PPALTMAHAEVHKKGYAKVGPAC 275
+LQR+ EE Q + V K + K+ L ++HKK K+ P+C
Sbjct: 893 ELQRLFEEFQDSDDVLGHIMKNITAKRSRARVVDKLLALGLVSERRQLHKKRRKKLAPSC 952

Query: 274 FRHADCSVKGGNTEQRQTELKRRGKP 197
++ + S + E + E ++ G P
Sbjct: 953 MQNGEESQRDAWQEDPEEEEEKEGLP 978


>sp|Q9C0J8|WDR33_HUMAN WD repeat-containing protein 33 OS=Homo sapiens
GN=WDR33 PE=1 SV=2
Length = 1336

Score = 29.3 bits (64), Expect = 9.4
Identities = 19/69 (27%), Positives = 26/69 (37%)
Frame = -3

Query: 286 GPACFRHADCSVKGGNTEQRQTELKRRGKPTTRTPKYGSPTRKRGAREKLQQQNLRFQGN 107
GP H + GG +E R + + P R PK G + G ++ F G
Sbjct: 1238 GPGTSEHREMEAPGGPSEDRGGKGRGGPGPAQRVPKSGRSSSLDGEHHDGYHRDEPFGGP 1297

Query: 106 GDGETESRG 80
T SRG
Sbjct: 1298 PGSGTPSRG 1306


>sp|P22308|REPY_ECOLX Replication initiation protein OS=Escherichia
coli GN=repA PE=3 SV=1
Length = 316

Score = 29.3 bits (64), Expect = 9.6
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = -1

Query: 357 EVKYSLRHLQWLMQRFTRRDTQK*DLRVS 271
E KYS+R +WL++ T++ T K ++ +S
Sbjct: 138 ENKYSMRIYEWLLKELTQKKTHKANIEIS 166


tr_hit_id B6MP21
Definition tr|B6MP21|B6MP21_BRAFL Putative uncharacterized protein OS=Branchiostoma floridae
Align length 59
Score (bit) 38.5
E-value 0.17
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP913988|Adiantum capillus-veneris mRNA, clone:
YMU001_000038_F03.
(477 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B6MP21|B6MP21_BRAFL Putative uncharacterized protein OS=Branc... 39 0.17
tr|A1CRN0|A1CRN0_ASPCL Putative uncharacterized protein OS=Asper... 37 0.49
tr|A9GBV3|A9GBV3_SORC5 Ribosomal large subunit pseudouridine syn... 37 0.64
tr|A9M358|A9M358_NEIM0 Ribosomal large subunit pseudouridine syn... 35 1.9
tr|A1KSW6|A1KSW6_NEIMF Pseudouridine synthase OS=Neisseria menin... 34 3.2
tr|A6GRE2|A6GRE2_9BURK Periplasmic sensor signal transduction hi... 34 3.2
tr|B1S5Z8|B1S5Z8_9BIFI Putative uncharacterized protein OS=Bifid... 33 5.4
tr|Q7NVZ8|Q7NVZ8_CHRVO Pseudouridine synthase OS=Chromobacterium... 33 5.4
tr|B4RDX5|B4RDX5_PHEZH Ribosomal large subunit pseudouridine syn... 33 5.4
tr|B7Y1R3|B7Y1R3_RUMHA Putative uncharacterized protein OS=Blaut... 33 5.4
tr|Q296R0|Q296R0_DROPS GA22027 OS=Drosophila pseudoobscura pseud... 33 5.4
tr|Q5KMH3|Q5KMH3_CRYNE Putative uncharacterized protein OS=Crypt... 33 5.4
tr|Q1DL06|Q1DL06_COCIM Putative uncharacterized protein OS=Cocci... 33 5.4
tr|A2QMX7|A2QMX7_ASPNC Function: syg1 of S. cerevisiae mediates ... 33 5.4
tr|Q4TCA2|Q4TCA2_TETNG Chromosome undetermined SCAF7039, whole g... 33 7.0
tr|Q5F9V9|Q5F9V9_NEIG1 Pseudouridine synthase OS=Neisseria gonor... 33 7.1
tr|B4RJW3|B4RJW3_NEIG2 RluD OS=Neisseria gonorrhoeae (strain NCC... 33 7.1
tr|A8JJE3|A8JJE3_CHLRE Serine/threonine protein kinase 6 (Fragme... 33 7.1
tr|Q015M1|Q015M1_OSTTA Chromosome 07 contig 1, DNA sequence OS=O... 33 9.2
tr|Q9AAY9|Q9AAY9_CAUCR Pseudouridine synthase OS=Caulobacter cre... 33 9.2
tr|Q08YE1|Q08YE1_STIAU Putative uncharacterized protein OS=Stigm... 33 9.2
tr|B8GZR6|B8GZR6_CAUCR Ribosomal large subunit pseudouridine syn... 33 9.2
tr|B4VB67|B4VB67_9ACTO Putative uncharacterized protein OS=Strep... 33 9.2
tr|A4QVT0|A4QVT0_MAGGR Putative uncharacterized protein OS=Magna... 33 9.2

>tr|B6MP21|B6MP21_BRAFL Putative uncharacterized protein
OS=Branchiostoma floridae GN=BRAFLDRAFT_114851 PE=4 SV=1
Length = 298

Score = 38.5 bits (88), Expect = 0.17
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Frame = -3

Query: 253 VKGGNTEQRQTELKRRGKPTTRTPKY---GSPTRKRGAREKLQQQNLRFQGNGDGETES 86
++GG +Q + +RRG P RT G+P R RGAR++LQ Q + +G+++S
Sbjct: 25 LRGGQEQQPADDGQRRGAPRPRTDAERAAGAPRRVRGARQRLQAARRINQQDSEGDSDS 83


>tr|A1CRN0|A1CRN0_ASPCL Putative uncharacterized protein
OS=Aspergillus clavatus GN=ACLA_030340 PE=4 SV=1
Length = 242

Score = 37.0 bits (84), Expect = 0.49
Identities = 21/57 (36%), Positives = 30/57 (52%)
Frame = -3

Query: 232 QRQTELKRRGKPTTRTPKYGSPTRKRGAREKLQQQNLRFQGNGDGETESRGPINREG 62
Q + E RR KP T + G+P + R R++ QQQ + QG G G G +N+ G
Sbjct: 112 QSKPEPPRRRKPRPTTMENGNPEKPRRRRQRPQQQQQQ-QGGGGGPLPGLGGVNQAG 167


>tr|A9GBV3|A9GBV3_SORC5 Ribosomal large subunit pseudouridine
synthase D OS=Sorangium cellulosum (strain So ce56)
GN=rluD3 PE=4 SV=1
Length = 345

Score = 36.6 bits (83), Expect = 0.64
Identities = 32/103 (31%), Positives = 47/103 (45%), Gaps = 4/103 (3%)
Frame = -3

Query: 361 PGSKV*PPALTMAHAEVHKKGYAKVGPACFRHADCSVKGGNTEQRQTELKRRGK-PTTRT 185
PGS V P + H V ++ +G A A CS++ G T Q + L RG+ P
Sbjct: 225 PGSHVAAPRRAVTHVRVIER----LGDAATVVA-CSLETGRTHQIRVHLAERGRTPVLGD 279

Query: 184 PKYGSPTRK---RGAREKLQQQNLRFQGNGDGETESRGPINRE 65
P YG P +K R E+L +Q L + G ++ P+ E
Sbjct: 280 PLYGKPPKKPAVRAIAEELGRQALHARVLGFIHPATQKPVRWE 322


>tr|A9M358|A9M358_NEIM0 Ribosomal large subunit pseudouridine
synthase D OS=Neisseria meningitidis serogroup C (strain
053442) GN=rluD PE=3 SV=1
Length = 392

Score = 35.0 bits (79), Expect = 1.9
Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 11/72 (15%)
Frame = -3

Query: 268 HADCSVKGGNTEQRQTELKRRGKPTTRTPKYGSP-----------TRKRGAREKLQQQNL 122
+ +CS++ G T Q + ++ P P YG+P + GAR+ L L
Sbjct: 263 YIECSLETGRTHQIRVHMREANHPLAADPVYGNPRHPCGDTVKEAVKSLGARQALHAYRL 322

Query: 121 RFQGNGDGETES 86
F GET S
Sbjct: 323 SFTHPKTGETRS 334


>tr|A1KSW6|A1KSW6_NEIMF Pseudouridine synthase OS=Neisseria
meningitidis serogroup C / serotype 2a (strain ATCC
700532 / FAM18) GN=rluD PE=3 SV=1
Length = 374

Score = 34.3 bits (77), Expect = 3.2
Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 11/72 (15%)
Frame = -3

Query: 268 HADCSVKGGNTEQRQTELKRRGKPTTRTPKYGSP-----------TRKRGAREKLQQQNL 122
+ +CS++ G T Q + ++ P P YG+P + GAR+ L L
Sbjct: 245 YIECSLETGRTHQIRVHMREANHPLAGDPVYGNPRHPCSDPVKEAVKSLGARQALHAYRL 304

Query: 121 RFQGNGDGETES 86
F GET S
Sbjct: 305 SFTHPESGETVS 316


>tr|A6GRE2|A6GRE2_9BURK Periplasmic sensor signal transduction
histidine kinase OS=Limnobacter sp. MED105
GN=LMED105_09780 PE=4 SV=1
Length = 629

Score = 34.3 bits (77), Expect = 3.2
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Frame = +2

Query: 299 SLLVNLCMSHCKCRRLYFTSGQLLRAVLIHQ---FSFLNLLSNPLKICPKHNFFPLIWTQ 469
+L+ +C SH K RRL T +LL A + Q +NL+ N +K P++ P+I Q
Sbjct: 494 ALVQEVCRSHPKHRRLKCTLPELLMAKVDRQLLALMLINLIDNAVKYSPENTDIPVILLQ 553


>tr|B1S5Z8|B1S5Z8_9BIFI Putative uncharacterized protein
OS=Bifidobacterium dentium ATCC 27678 GN=BIFDEN_02402
PE=4 SV=1
Length = 278

Score = 33.5 bits (75), Expect = 5.4
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1

Query: 118 IAGFAAAVSLARLFFLLGSRIWAFVLWVSLSSLTPSAFAP 237
+ GF A +S A +F + GS W F + + L + SA AP
Sbjct: 207 VVGFGANISAAIMFIVRGSVYWPFAIMMCLGCIIGSAIAP 246


>tr|Q7NVZ8|Q7NVZ8_CHRVO Pseudouridine synthase OS=Chromobacterium
violaceum GN=rluD PE=3 SV=1
Length = 363

Score = 33.5 bits (75), Expect = 5.4
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -3

Query: 280 ACFRHADCSVKGGNTEQRQTELKRRGKPTTRTPKYGSPTRK 158
A H +C ++ G T Q + ++ G P P YG+P K
Sbjct: 236 ASHSHVECKLETGRTHQIRVHMREAGHPLAGDPVYGNPRHK 276


>tr|B4RDX5|B4RDX5_PHEZH Ribosomal large subunit pseudouridine
synthase d OS=Phenylobacterium zucineum (strain HLK1)
GN=rluD PE=4 SV=1
Length = 326

Score = 33.5 bits (75), Expect = 5.4
Identities = 19/67 (28%), Positives = 28/67 (41%)
Frame = -3

Query: 259 CSVKGGNTEQRQTELKRRGKPTTRTPKYGSPTRKRGAREKLQQQNLRFQGNGDGETESRG 80
C ++ G T Q + L +G P P YGS RE ++Q L Q R
Sbjct: 240 CRLETGRTHQIRVHLASKGTPCLGDPTYGSGPPAEAVREAIRQAGLARQALHAAVLGFRH 299

Query: 79 PINREGL 59
P++ + L
Sbjct: 300 PVSGQAL 306


>tr|B7Y1R3|B7Y1R3_RUMHA Putative uncharacterized protein OS=Blautia
hansenii DSM 20583 GN=BLAHAN_01951 PE=4 SV=1
Length = 919

Score = 33.5 bits (75), Expect = 5.4
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 8/64 (12%)
Frame = -3

Query: 250 KGGNTEQRQTELKRR------GKPTTRTPKYGSPTRKR--GAREKLQQQNLRFQGNGDGE 95
+GGN E RQ R G+P R+ G P R G + + N RF GNG+
Sbjct: 160 RGGNGENRQNRPNNRFNGNGEGRPNNRSNGEGRPNNNRYNGNNNQEGRSNNRFNGNGENR 219

Query: 94 TESR 83
+R
Sbjct: 220 QGNR 223