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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913990
Clone id YMU001_000038_F05
Library
Length 539
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000038_F05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TGGGATCGTGTCGGCCATACATGATGCACAATTATTTCAGAAAGTAAATGATAACTAAGC
CTCACATAGCTCATACACCATGTTACAATCTCCCATTTGAAGGAAAAAGGGAAACATTAA
TGGAGCAATCTCATTTTATATGGCCCTTCCAACAAGGCGAATGCACCTTGTTATTACAGT
TCTTGTACAAACACTTGGGCATGACCCCTGCCTACAAAAATGATCACACTTCGTGGCAAA
AGAATTGCTCATATATACAGAGCTCATCCTACAGAAGAAATCATGAGACAGACATGAATC
ATCATAGCTCAATGGTTTGCTGATTGAGAGCTTGATAATGCCAGAGTTCCTGATTAACAA
ATTGTGGCTCAAGAAATCTACAAACAAACCACCAAAGCCTATACACATCTGAAAAGTTGT
TTAGAAACCCCAGTGATACATATAGTACAGGCATCTCGAGTCTTTGCACCGTGTCATCTT
TGGAGAGGCACTTGTAGACCCCCGACATCTCCATGCACCCGACTAAACGCTCTTCATGG
■■Homology search results ■■ -
sp_hit_id Q559G8
Definition sp|Q559G8|MOCOS_DICDI Molybdenum cofactor sulfurase OS=Dictyostelium discoideum
Align length 55
Score (bit) 30.4
E-value 5.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913990|Adiantum capillus-veneris mRNA, clone:
YMU001_000038_F05.
         (539 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q559G8|MOCOS_DICDI Molybdenum cofactor sulfurase OS=Dictyoste...    30   5.7  
sp|O00339|MATN2_HUMAN Matrilin-2 OS=Homo sapiens GN=MATN2 PE=1 SV=3    30   9.8  
sp|O13939|AP3B_SCHPO AP-3 complex subunit beta OS=Schizosaccharo...    30   9.8  
sp|Q99965|ADAM2_HUMAN Disintegrin and metalloproteinase domain-c...    30   9.8  

>sp|Q559G8|MOCOS_DICDI Molybdenum cofactor sulfurase
           OS=Dictyostelium discoideum GN=mocos PE=3 SV=1
          Length = 1012

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 14/55 (25%), Positives = 26/55 (47%)
 Frame = -2

Query: 490 CLSKDDTVQRLEMPVLYVSLGFLNNFSDVYRLWWFVCRFLEPQFVNQELWHYQAL 326
           C    D +       + +S G++NNF+DVY+       FL+  F+N   +  + +
Sbjct: 555 CWDSKDILNGKPTGSVRISFGYMNNFNDVYKF----INFLKSNFINDHKFEKEVI 605


>sp|O00339|MATN2_HUMAN Matrilin-2 OS=Homo sapiens GN=MATN2 PE=1 SV=3
          Length = 956

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 21/62 (33%), Positives = 24/62 (38%)
 Frame = -3

Query: 411 QMCIGFGGLFVDFLSHNLLIRNSGIIKLSISKPLSYDDSCLSHDFFCRMSSVYMSNSFAT 232
           Q+C+     FV   S   LI           K  S  D CL  D  C  S V M  SFA 
Sbjct: 456 QLCLNTEDSFVCQCSEGFLINED-------LKTCSRVDYCLLSDHGCEYSCVNMDRSFAC 508

Query: 231 KC 226
           +C
Sbjct: 509 QC 510


>sp|O13939|AP3B_SCHPO AP-3 complex subunit beta
           OS=Schizosaccharomyces pombe GN=apl6 PE=1 SV=1
          Length = 745

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 116 INGAISFYMALPTRRMHLVITVLVQTLGHDPCLQ 217
           I GA +FY   P+ +MHL++  L+Q L   P ++
Sbjct: 279 IAGARAFYYLAPSNQMHLIVEPLLQLLLEKPIVR 312


>sp|Q99965|ADAM2_HUMAN Disintegrin and metalloproteinase
           domain-containing protein 2 OS=Homo sapiens GN=ADAM2
           PE=2 SV=2
          Length = 735

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 178 CNNKVHSPCWKGHIK*DCSINVSLFP 101
           CNNK H  C   ++  DCS+   L+P
Sbjct: 627 CNNKKHCHCSASYLPPDCSVQSDLWP 652
tr_hit_id B8B9C3
Definition tr|B8B9C3|B8B9C3_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica
Align length 59
Score (bit) 67.4
E-value 5.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913990|Adiantum capillus-veneris mRNA, clone:
YMU001_000038_F05.
         (539 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8B9C3|B8B9C3_ORYSI Putative uncharacterized protein OS=Oryza...    67   5e-10
tr|A7R1T5|A7R1T5_VITVI Chromosome undetermined scaffold_376, who...    67   8e-10
tr|Q6ZBH4|Q6ZBH4_ORYSJ Os08g0545000 protein OS=Oryza sativa subs...    66   1e-09
tr|A2YXQ3|A2YXQ3_ORYSI Putative uncharacterized protein OS=Oryza...    66   1e-09
tr|B8A1Q9|B8A1Q9_MAIZE Putative uncharacterized protein OS=Zea m...    65   2e-09
tr|B4FNI7|B4FNI7_MAIZE Putative uncharacterized protein OS=Zea m...    65   2e-09
tr|A9REN7|A9REN7_PHYPA Predicted protein OS=Physcomitrella paten...    62   1e-08
tr|A7QKE0|A7QKE0_VITVI Chromosome chr2 scaffold_112, whole genom...    62   2e-08
tr|A9RG94|A9RG94_PHYPA Predicted protein OS=Physcomitrella paten...    59   1e-07
tr|A9TR75|A9TR75_PHYPA Predicted protein OS=Physcomitrella paten...    59   2e-07
tr|A9U2B6|A9U2B6_PHYPA Predicted protein OS=Physcomitrella paten...    52   2e-05
tr|Q2QMU3|Q2QMU3_ORYSJ Os12g0590900 protein OS=Oryza sativa subs...    51   4e-05
tr|A3CJ02|A3CJ02_ORYSJ Putative uncharacterized protein OS=Oryza...    51   4e-05
tr|A2ZM89|A2ZM89_ORYSI Putative uncharacterized protein OS=Oryza...    51   4e-05
tr|O82746|O82746_ARATH Putative uncharacterized protein F7H19.16...    50   1e-04
tr|Q9FGL6|Q9FGL6_ARATH Genomic DNA, chromosome 5, P1 clone:MJM18...    49   2e-04
tr|Q9FGD5|Q9FGD5_ARATH Emb|CAB16785.1 OS=Arabidopsis thaliana GN...    48   4e-04
tr|Q7Y0C6|Q7Y0C6_ORYSJ Os03g0765800 protein OS=Oryza sativa subs...    48   4e-04
tr|Q10EM3|Q10EM3_ORYSJ Expressed protein OS=Oryza sativa subsp. ...    48   4e-04
tr|A3AN05|A3AN05_ORYSJ Putative uncharacterized protein OS=Oryza...    48   4e-04
tr|A2XMB0|A2XMB0_ORYSI Putative uncharacterized protein OS=Oryza...    48   4e-04
tr|A7R4L8|A7R4L8_VITVI Chromosome undetermined scaffold_741, who...    47   5e-04
tr|A7R4E4|A7R4E4_VITVI Chromosome undetermined scaffold_670, who...    47   5e-04
tr|A5AMA2|A5AMA2_VITVI Putative uncharacterized protein OS=Vitis...    47   5e-04
tr|O80468|O80468_ARATH Putative uncharacterized protein At2g2352...    42   0.016
tr|O23176|O23176_ARATH Putative uncharacterized protein C7A10.26...    42   0.016
tr|A7NTN6|A7NTN6_VITVI Chromosome chr18 scaffold_1, whole genome...    40   0.060
tr|A5BXA6|A5BXA6_VITVI Putative uncharacterized protein OS=Vitis...    40   0.060
tr|A9TRK0|A9TRK0_PHYPA Predicted protein OS=Physcomitrella paten...    36   1.1  
tr|A9SLL0|A9SLL0_PHYPA Predicted protein OS=Physcomitrella paten...    36   1.1  

>tr|B8B9C3|B8B9C3_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_30127 PE=4 SV=1
          Length = 897

 Score = 67.4 bits (163), Expect = 5e-10
 Identities = 30/59 (50%), Positives = 39/59 (66%)
 Frame = -2

Query: 481 KDDTVQRLEMPVLYVSLGFLNNFSDVYRLWWFVCRFLEPQFVNQELWHYQALNQQTIEL 305
           + D    + + V+  SLGFL NF D YRLW FV +FL+  FV +E W Y ALNQ+T+EL
Sbjct: 601 RKDAAGEMGIYVVNASLGFLTNFDDAYRLWAFVAKFLDADFVEKERWRYTALNQKTVEL 659


>tr|A7R1T5|A7R1T5_VITVI Chromosome undetermined scaffold_376, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00012400001 PE=4 SV=1
          Length = 474

 Score = 66.6 bits (161), Expect = 8e-10
 Identities = 32/59 (54%), Positives = 41/59 (69%)
 Frame = -2

Query: 481 KDDTVQRLEMPVLYVSLGFLNNFSDVYRLWWFVCRFLEPQFVNQELWHYQALNQQTIEL 305
           KDD    L + V+  +LGFL NF D+YRLW FV +FL+  FV +E W Y ALNQ+TIE+
Sbjct: 420 KDD----LGITVVTAALGFLTNFEDIYRLWAFVAQFLDADFVEKERWRYTALNQKTIEV 474


>tr|Q6ZBH4|Q6ZBH4_ORYSJ Os08g0545000 protein OS=Oryza sativa subsp.
           japonica GN=P0623F08.34 PE=2 SV=1
          Length = 659

 Score = 66.2 bits (160), Expect = 1e-09
 Identities = 29/59 (49%), Positives = 39/59 (66%)
 Frame = -2

Query: 481 KDDTVQRLEMPVLYVSLGFLNNFSDVYRLWWFVCRFLEPQFVNQELWHYQALNQQTIEL 305
           + D    + + V+  SLGFL NF D YRLW FV +FL+  FV +E W Y ALNQ+T+E+
Sbjct: 601 RKDAAGEMGIYVVNASLGFLTNFDDAYRLWAFVAKFLDADFVEKERWRYTALNQKTVEV 659


>tr|A2YXQ3|A2YXQ3_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_30126 PE=4 SV=1
          Length = 660

 Score = 66.2 bits (160), Expect = 1e-09
 Identities = 29/59 (49%), Positives = 39/59 (66%)
 Frame = -2

Query: 481 KDDTVQRLEMPVLYVSLGFLNNFSDVYRLWWFVCRFLEPQFVNQELWHYQALNQQTIEL 305
           + D    + + V+  SLGFL NF D YRLW FV +FL+  FV +E W Y ALNQ+T+E+
Sbjct: 602 RKDAAGEMGIYVVNASLGFLTNFDDAYRLWAFVAKFLDADFVEKERWRYTALNQKTVEV 660


>tr|B8A1Q9|B8A1Q9_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 692

 Score = 65.5 bits (158), Expect = 2e-09
 Identities = 28/48 (58%), Positives = 36/48 (75%)
 Frame = -2

Query: 448 VLYVSLGFLNNFSDVYRLWWFVCRFLEPQFVNQELWHYQALNQQTIEL 305
           V+  SLGFL+NF D YRLW FV +FL+  FV +E W Y ALNQ+T+E+
Sbjct: 645 VVNASLGFLSNFEDAYRLWAFVAKFLDADFVEKERWRYTALNQKTVEV 692


>tr|B4FNI7|B4FNI7_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 278

 Score = 65.5 bits (158), Expect = 2e-09
 Identities = 28/48 (58%), Positives = 36/48 (75%)
 Frame = -2

Query: 448 VLYVSLGFLNNFSDVYRLWWFVCRFLEPQFVNQELWHYQALNQQTIEL 305
           V+  SLGFL+NF D YRLW FV +FL+  FV +E W Y ALNQ+T+E+
Sbjct: 231 VVNASLGFLSNFEDAYRLWAFVAKFLDADFVEKERWRYTALNQKTVEV 278


>tr|A9REN7|A9REN7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_174193 PE=4 SV=1
          Length = 511

 Score = 62.4 bits (150), Expect = 1e-08
 Identities = 31/55 (56%), Positives = 41/55 (74%)
 Frame = -2

Query: 475 DTVQRLEMPVLYVSLGFLNNFSDVYRLWWFVCRFLEPQFVNQELWHYQALNQQTI 311
           DT+   +  V+  SL FL++F+DVYRL  FV  FL+  FV++EL+HYQALNQQTI
Sbjct: 455 DTLHAGQFSVVCASLCFLSSFTDVYRLLEFVALFLDADFVHKELFHYQALNQQTI 509


>tr|A7QKE0|A7QKE0_VITVI Chromosome chr2 scaffold_112, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00001078001
           PE=4 SV=1
          Length = 652

 Score = 61.6 bits (148), Expect = 2e-08
 Identities = 27/48 (56%), Positives = 34/48 (70%)
 Frame = -2

Query: 448 VLYVSLGFLNNFSDVYRLWWFVCRFLEPQFVNQELWHYQALNQQTIEL 305
           V+  +LG L NF DVY LW FV RFL+  FV +E W Y ALNQ+T+E+
Sbjct: 605 VVSAALGLLTNFEDVYNLWAFVSRFLDADFVEKERWRYVALNQKTVEV 652


>tr|A9RG94|A9RG94_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_113639 PE=4 SV=1
          Length = 574

 Score = 59.3 bits (142), Expect = 1e-07
 Identities = 24/47 (51%), Positives = 35/47 (74%)
 Frame = -2

Query: 457 EMPVLYVSLGFLNNFSDVYRLWWFVCRFLEPQFVNQELWHYQALNQQ 317
           E+PV+  +LGF++ F DVYRLW FV +FL+  FV +E W Y ++NQ+
Sbjct: 524 EIPVVTAALGFVSTFEDVYRLWAFVAKFLDADFVKREEWLYHSINQE 570


>tr|A9TR75|A9TR75_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_149364 PE=4 SV=1
          Length = 637

 Score = 58.9 bits (141), Expect = 2e-07
 Identities = 25/48 (52%), Positives = 35/48 (72%)
 Frame = -2

Query: 460 LEMPVLYVSLGFLNNFSDVYRLWWFVCRFLEPQFVNQELWHYQALNQQ 317
           LE+PV+  +LGF++ F DVYRLW FV +FL+  FV +E W   +LNQ+
Sbjct: 586 LEIPVVTAALGFVSTFEDVYRLWAFVAKFLDAGFVKREEWQQHSLNQE 633