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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913993
Clone id YMU001_000038_F08
Library
Length 486
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000038_F08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GGTCTCCAATTTTGAGCTACGACGAGGAGGAATTGCCGTACAAAGGAGTACAAGAAAGGC
AGAGCAGAGAGAAACTCAAGCATTTTGCAGAGGGCTTCTTGCTGCGTTGTCACATCAGAC
GGCTGCAGCAAAGGGCGCAGCAGGCTCCTCCGTACCCCCCAAGAGGGCCTCTATACAGGT
ATGAAGGTGCAAGCGGTGGAGACCTAAGAACTCATCCACACACAATTTGCTCTGTAAAGG
AAAGCAGAGAAAGTAACAATGAACCGGCGATGCCTATTACATCCTCGACAACTGACCTTG
ACTGTTTTATAGGAGCTGATGTCGTAATTGATATTGTAGGTTTGGTGAAATACATAGAAA
GTCATTGTAGCCAAGCAAAAACATCTACAGATTTAGTCACTAACTCAGTTAATTACGCTG
AAATGCCTCTCATAGCTGGGCAAGTAGTCATCTCAAATTTTTCTGCAGTGATTATGACCA
TCATTG
■■Homology search results ■■ -
sp_hit_id Q66GS9
Definition sp|Q66GS9|CP135_HUMAN Centrosomal protein of 135 kDa OS=Homo sapiens
Align length 44
Score (bit) 30.4
E-value 4.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913993|Adiantum capillus-veneris mRNA, clone:
YMU001_000038_F08.
         (486 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q66GS9|CP135_HUMAN Centrosomal protein of 135 kDa OS=Homo sap...    30   4.5  
sp|P39720|OAF1_YEAST Oleate-activated transcription factor 1 OS=...    30   7.5  

>sp|Q66GS9|CP135_HUMAN Centrosomal protein of 135 kDa OS=Homo
           sapiens GN=CEP135 PE=1 SV=1
          Length = 1140

 Score = 30.4 bits (67), Expect = 4.5
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +1

Query: 43  KEYKKGRAERNSSILQRASCCVVTSDGCSKGRSRLLRTPQEGLY 174
           ++Y K   ER   I+QR SC    S   ++ +S + RTP++G Y
Sbjct: 454 RDYYKKELERLQHIIQRRSCSTSYS---AREKSSIFRTPEKGDY 494


>sp|P39720|OAF1_YEAST Oleate-activated transcription factor 1
           OS=Saccharomyces cerevisiae GN=OAF1 PE=1 SV=2
          Length = 1047

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
 Frame = +3

Query: 228 CSVKESRESNNEPAMPI---TSSTTDLDCFIGADVVIDIVGLVKYIESHCSQAKTSTDLV 398
           C  ++ +   NE    I   T+S  +L   +   ++ + VG  +Y+E HC Q    +DL+
Sbjct: 268 CQTEDEKNRVNEFTDRILQNTNSNRNLKIGMLLSMLYNSVGY-QYLEDHCPQGGEYSDLL 326

Query: 399 TNSVNYAEMPLIAGQVV 449
            N +N  E  L + +++
Sbjct: 327 RNLINECEAILPSYEII 343
tr_hit_id Q2SUT0
Definition tr|Q2SUT0|Q2SUT0_BURTA 3-hydroxyacyl-CoA dehydrogenase family protein OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301)
Align length 46
Score (bit) 35.4
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913993|Adiantum capillus-veneris mRNA, clone:
YMU001_000038_F08.
         (486 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q2SUT0|Q2SUT0_BURTA 3-hydroxyacyl-CoA dehydrogenase family pr...    35   1.4  
tr|A7IH09|A7IH09_XANP2 Gamma-glutamyl phosphate reductase OS=Xan...    35   2.4  
tr|B4V5B6|B4V5B6_9ACTO Ribonuclease 3 OS=Streptomyces sp. Mg1 GN...    35   2.4  
tr|B1QXQ3|B1QXQ3_CLOBU Putative uncharacterized protein OS=Clost...    33   7.0  
tr|Q63L65|Q63L65_BURPS Putative formate hydrogenlyase/hydrogenas...    33   9.1  
tr|Q3JMD7|Q3JMD7_BURP1 Hydrogenase subunit OS=Burkholderia pseud...    33   9.1  
tr|A5CQ44|A5CQ44_CLAM3 Homoserine dehydrogenase OS=Clavibacter m...    33   9.1  
tr|A3P5F2|A3P5F2_BURP0 Putative hydrogenase subunit OS=Burkholde...    33   9.1  
tr|A3NJT8|A3NJT8_BURP6 Putative hydrogenase subunit OS=Burkholde...    33   9.1  
tr|B7CEL8|B7CEL8_BURPS Putative hydrogenase subunit OS=Burkholde...    33   9.1  
tr|B5S8F9|B5S8F9_RALSO Putative uncharacterized protein OS=Ralst...    33   9.1  
tr|B1H6D9|B1H6D9_BURPS Putative hydrogenase subunit OS=Burkholde...    33   9.1  
tr|A8KSE6|A8KSE6_BURPS Putative hydrogenase subunit OS=Burkholde...    33   9.1  
tr|A8ELU3|A8ELU3_BURPS Putative hydrogenase subunit OS=Burkholde...    33   9.1  

>tr|Q2SUT0|Q2SUT0_BURTA 3-hydroxyacyl-CoA dehydrogenase family
           protein OS=Burkholderia thailandensis (strain E264 /
           ATCC 700388 / DSM 13276 / CIP 106301) GN=BTH_I2807 PE=4
           SV=1
          Length = 388

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +1

Query: 28  RNCRTKEYKKGRAERNSSILQRASCCVVTSDGCSKGRSRLLRTPQE 165
           R+ R    + GRA RNS +  R SC      GC++  SR+ R P +
Sbjct: 13  RSRRRSPARSGRANRNSRMTLRHSCGFFAPGGCARAASRIRRRPTD 58


>tr|A7IH09|A7IH09_XANP2 Gamma-glutamyl phosphate reductase
           OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 /
           Py2) GN=Xaut_2058 PE=4 SV=1
          Length = 457

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
 Frame = +3

Query: 261 EPAMPITSSTTDLDCFIGADVVIDIVGLVKYIESHCSQAKTSTDLVTNSVNYAEMPL--I 434
           +PA P+   T  LD  I A VV  + G V +IE+H S    S  +VT  V  AE  L  +
Sbjct: 342 KPATPLDWDTEYLDAIIAAKVVDGLAGAVAHIEAHGSHHTDS--IVTEDVATAERFLAEV 399

Query: 435 AGQVVISNFS 464
              +V+ N S
Sbjct: 400 DSAIVLHNAS 409


>tr|B4V5B6|B4V5B6_9ACTO Ribonuclease 3 OS=Streptomyces sp. Mg1
           GN=SSAG_02944 PE=4 SV=1
          Length = 277

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 18/45 (40%), Positives = 26/45 (57%)
 Frame = +2

Query: 29  GIAVQRSTRKAEQRETQAFCRGLLAALSHQTAAAKGAAGSSVPPK 163
           G    RS ++AEQ+  ++  RG+ AA   + AAA  AA + VP K
Sbjct: 217 GTGTGRSKKEAEQQAAESAWRGIRAAADERIAAAAAAASAVVPAK 261


>tr|B1QXQ3|B1QXQ3_CLOBU Putative uncharacterized protein
           OS=Clostridium butyricum 5521 GN=CBY_3277 PE=4 SV=1
          Length = 356

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
 Frame = +3

Query: 309 IGADVVIDIVGLVKYIESHCSQAKTSTDLVTNSVNYAE--MPLIAGQVVISNFSAVIMTI 482
           +G    I   GLV  I +  ++ K + +LV  + +Y +   PL+AG++V+ +   V MTI
Sbjct: 208 VGNATCIPSAGLVTVIITDSNKRKANDELVQKTYDYIDEVRPLLAGELVVKSVKEVEMTI 267


>tr|Q63L65|Q63L65_BURPS Putative formate
           hydrogenlyase/hydrogenase/NADH dehydrogenase subunit
           OS=Burkholderia pseudomallei GN=BPSS1143 PE=4 SV=1
          Length = 551

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 20/49 (40%), Positives = 27/49 (55%)
 Frame = +2

Query: 23  RGGIAVQRSTRKAEQRETQAFCRGLLAALSHQTAAAKGAAGSSVPPKRA 169
           RG +A + + R AE  E+    R LLA L     AA+ A G++VP  RA
Sbjct: 411 RGDVAARVAVRFAETYESMRAIRALLADLPDDGLAAEIAPGATVPGARA 459


>tr|Q3JMD7|Q3JMD7_BURP1 Hydrogenase subunit OS=Burkholderia
           pseudomallei (strain 1710b) GN=hyfG PE=4 SV=1
          Length = 567

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 20/49 (40%), Positives = 27/49 (55%)
 Frame = +2

Query: 23  RGGIAVQRSTRKAEQRETQAFCRGLLAALSHQTAAAKGAAGSSVPPKRA 169
           RG +A + + R AE  E+    R LLA L     AA+ A G++VP  RA
Sbjct: 427 RGDVAARVAVRFAETYESMRAIRALLADLPDDGLAAEIAPGATVPGARA 475


>tr|A5CQ44|A5CQ44_CLAM3 Homoserine dehydrogenase OS=Clavibacter
           michiganensis subsp. michiganensis (strain NCPPB 382)
           GN=thrA PE=3 SV=1
          Length = 443

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
 Frame = +3

Query: 246 RESNNEPAMPITSSTTDLDCFI-GADVVIDIVGLVKYIESHCSQAKTS-TDLVT 401
           +++  +P+MP    TTD +  I GAD+VI+++G ++   +H   A +S  D+VT
Sbjct: 50  QDAPRDPSMPRELLTTDAESLILGADIVIELMGGIEPARAHILAAISSGADVVT 103


>tr|A3P5F2|A3P5F2_BURP0 Putative hydrogenase subunit OS=Burkholderia
           pseudomallei (strain 1106a) GN=BURPS1106A_A1528 PE=4
           SV=1
          Length = 574

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 20/49 (40%), Positives = 27/49 (55%)
 Frame = +2

Query: 23  RGGIAVQRSTRKAEQRETQAFCRGLLAALSHQTAAAKGAAGSSVPPKRA 169
           RG +A + + R AE  E+    R LLA L     AA+ A G++VP  RA
Sbjct: 434 RGDVAARVAVRFAETYESMRAIRALLADLPDDGLAAEIAPGATVPGARA 482


>tr|A3NJT8|A3NJT8_BURP6 Putative hydrogenase subunit OS=Burkholderia
           pseudomallei (strain 668) GN=BURPS668_A1613 PE=4 SV=1
          Length = 574

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 20/49 (40%), Positives = 27/49 (55%)
 Frame = +2

Query: 23  RGGIAVQRSTRKAEQRETQAFCRGLLAALSHQTAAAKGAAGSSVPPKRA 169
           RG +A + + R AE  E+    R LLA L     AA+ A G++VP  RA
Sbjct: 434 RGDVAARVAVRFAETYESMRAIRALLADLPDDGLAAEIAPGANVPGARA 482


>tr|B7CEL8|B7CEL8_BURPS Putative hydrogenase subunit OS=Burkholderia
           pseudomallei 576 GN=BUC_5769 PE=4 SV=1
          Length = 580

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 20/49 (40%), Positives = 27/49 (55%)
 Frame = +2

Query: 23  RGGIAVQRSTRKAEQRETQAFCRGLLAALSHQTAAAKGAAGSSVPPKRA 169
           RG +A + + R AE  E+    R LLA L     AA+ A G++VP  RA
Sbjct: 440 RGDVAARVAVRFAETYESMRAIRALLADLPDDGLAAEIAPGATVPGARA 488