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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913994
Clone id YMU001_000038_F09
Library
Length 463
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000038_F09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AACAGGTTCTGGGAACAGGTTCTGGGAACAAGTCTTCGGGAGCGGAAAACTATGTTCAGA
ATGGGTTTCGGCTCCGATAAATTGCTTTGGTAAATCGTGTGTAGGGGAATTCTCCGGCAA
GAACTGGAACAGGTATTGCCTCTGGATTTGGAACGCCCTTGGTAAACTAAAGCGCCCTTT
GGAACTGGTTCTAGCTCCGGTGAATCGGGGAAAATGATAATTTCAGGTTCGGGAGTGTCC
GGAATCACCTTGCGTGGAGGAGGATTTTCGGGTAAGAGTTCCTCCGGAGTTACGTCTATG
TACGAGATGAAGGGAATAGGCACATCTAAGTCGTTTCGGGCTCTGTTGCGCTCAAAGGAA
GACGCCCAGAAGGAACTACACGCGAGGAAAGAGGCAGTGCATAGAGGCGGGCTGGCAGAT
AGTGTAGCAATTGTAGATCGCTGGAGAAAGCCATTCGCTGGAG
■■Homology search results ■■ -
sp_hit_id Q13761
Definition sp|Q13761|RUNX3_HUMAN Runt-related transcription factor 3 OS=Homo sapiens
Align length 68
Score (bit) 30.4
E-value 3.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913994|Adiantum capillus-veneris mRNA, clone:
YMU001_000038_F09.
         (463 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q13761|RUNX3_HUMAN Runt-related transcription factor 3 OS=Hom...    30   3.9  
sp|O57328|FZD1_CHICK Frizzled-1 OS=Gallus gallus GN=FZD1 PE=2 SV=1     30   3.9  
sp|Q5RJN9|CN079_RAT Uncharacterized protein C14orf79 homolog OS=...    30   3.9  
sp|Q96BN6|F149B_HUMAN Protein FAM149B1 OS=Homo sapiens GN=FAM149...    30   6.7  
sp|Q6CF60|BST1C_YARLI Putative GPI inositol-deacylase C OS=Yarro...    30   6.7  
sp|Q9LGU7|SPL1_ORYSJ Squamosa promoter-binding-like protein 1 OS...    29   8.5  

>sp|Q13761|RUNX3_HUMAN Runt-related transcription factor 3 OS=Homo
           sapiens GN=RUNX3 PE=1 SV=2
          Length = 415

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 22/68 (32%), Positives = 31/68 (45%)
 Frame = -2

Query: 207 RFTGARTSSKGRFSLPRAFQIQRQYLFQFLPENSPTHDLPKQFIGAETHSEHSFPLPKTC 28
           R T +  S +G  S    F  Q Q   Q   E +P  D P+QF       + SFP   T 
Sbjct: 207 RVTPSTPSPRGSLSTTSHFSSQPQTPIQGTSELNPFSD-PRQF-------DRSFPTLPTL 258

Query: 27  SQNLFPEP 4
           +++ FP+P
Sbjct: 259 TESRFPDP 266


>sp|O57328|FZD1_CHICK Frizzled-1 OS=Gallus gallus GN=FZD1 PE=2 SV=1
          Length = 592

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 34/118 (28%), Positives = 50/118 (42%), Gaps = 5/118 (4%)
 Frame = -2

Query: 450 LSPAIYNCYTICQPASMHCLFPRV*FLLGVFL*AQQSPKRLRCA-YSLHLVHRRNSGGTL 274
           L  A+  C ++C+ A   C       L+  F    Q P  LRC  + +H       G   
Sbjct: 134 LEQALPPCRSLCERARQGCEA-----LMNKF--GFQWPDTLRCEKFPVHGAGELCVGQNA 186

Query: 273 TRKSSSTQGDSGHSRT*NYHFPRFTGARTS----SKGRFSLPRAFQIQRQYLFQFLPE 112
           + + + T      S T N H  R  GA  S    ++GRFS PRA ++     ++FL E
Sbjct: 187 SERGTPTPALRPESWTSNPH--RGGGAGGSGPGEARGRFSCPRALKVPSYLNYRFLGE 242


>sp|Q5RJN9|CN079_RAT Uncharacterized protein C14orf79 homolog
           OS=Rattus norvegicus PE=2 SV=1
          Length = 321

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 19/61 (31%), Positives = 30/61 (49%)
 Frame = -2

Query: 201 TGARTSSKGRFSLPRAFQIQRQYLFQFLPENSPTHDLPKQFIGAETHSEHSFPLPKTCSQ 22
           T A  SS+   S  + F++     FQ +P    T D+       ET SE + P+P+ CS+
Sbjct: 133 TAAGPSSESILSYEKVFRLA----FQEVPVEQATEDVCSLDRFLETGSEETAPVPRLCSE 188

Query: 21  N 19
           +
Sbjct: 189 S 189


>sp|Q96BN6|F149B_HUMAN Protein FAM149B1 OS=Homo sapiens GN=FAM149B1
           PE=2 SV=2
          Length = 582

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 16/38 (42%), Positives = 24/38 (63%)
 Frame = -2

Query: 288 SGGTLTRKSSSTQGDSGHSRT*NYHFPRFTGARTSSKG 175
           S   +TR+SS T  D+G+S +    FP +TGA  S++G
Sbjct: 51  SKSDITRESSFTSADTGNSLS---AFPSYTGAGISTEG 85


>sp|Q6CF60|BST1C_YARLI Putative GPI inositol-deacylase C OS=Yarrowia
           lipolytica GN=BST1C PE=3 SV=1
          Length = 833

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 19/47 (40%), Positives = 23/47 (48%)
 Frame = -1

Query: 454 MAFSSDLQLLHYLPARLYALPLSSRVVPSGRLPLSATEPETT*MCLF 314
           M FSS   L+  LP  L+   LS R +PSG    S     T+  CLF
Sbjct: 752 MTFSSHHNLVSILPTLLFVENLSFRRIPSGSSITSLLLAYTSLHCLF 798


>sp|Q9LGU7|SPL1_ORYSJ Squamosa promoter-binding-like protein 1
           OS=Oryza sativa subsp. japonica GN=SPL1 PE=2 SV=1
          Length = 862

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = -3

Query: 449 FLQRSTIATLSASPPLCTASFLACSSFWASSFERNR 342
           FLQRS I   S +P  CT  F A    W  SF  +R
Sbjct: 565 FLQRSHIRATSETPKDCTEGFPAARFRWLLSFAVDR 600
tr_hit_id Q608N6
Definition tr|Q608N6|Q608N6_METCA ParA family protein OS=Methylococcus capsulatus
Align length 80
Score (bit) 35.4
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913994|Adiantum capillus-veneris mRNA, clone:
YMU001_000038_F09.
         (463 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q608N6|Q608N6_METCA ParA family protein OS=Methylococcus caps...    35   1.4  
tr|Q7PUY2|Q7PUY2_ANOGA AGAP001690-PA (Fragment) OS=Anopheles gam...    35   1.4  
tr|Q6LPX8|Q6LPX8_PHOPR Putative uncharacterized protein RSC2121 ...    34   4.1  
tr|Q1YZS1|Q1YZS1_PHOPR Putative uncharacterized protein OS=Photo...    34   4.1  
tr|B3N3H2|B3N3H2_DROER GG10842 OS=Drosophila erecta GN=GG10842 P...    34   4.1  
tr|Q0VQ08|Q0VQ08_ALCBS ATPase AAA family related to the helicase...    28   5.9  
tr|Q178B2|Q178B2_AEDAE Putative uncharacterized protein OS=Aedes...    33   9.1  
tr|A0D199|A0D199_PARTE Chromosome undetermined scaffold_34, whol...    33   9.2  

>tr|Q608N6|Q608N6_METCA ParA family protein OS=Methylococcus
           capsulatus GN=MCA1454 PE=4 SV=1
          Length = 258

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 27/80 (33%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
 Frame = -3

Query: 248 VIPDTPEPEIIIFPDSPELEPVPKGALVYQGRSKSRGNTCSSSCRRIPLHTI--YQSNLS 75
           VI +TP P + I P  PELEP+       QGR +SR         R  L T+  +     
Sbjct: 83  VIHETPYPNLYIAPSHPELEPL-------QGRLESRYKIYK---LREALETLSGFDRVFI 132

Query: 74  EPKPILNIVFRSRRLVPRTC 15
           +  P+LN   RS  +  R C
Sbjct: 133 DTPPVLNFYSRSALIAARRC 152


>tr|Q7PUY2|Q7PUY2_ANOGA AGAP001690-PA (Fragment) OS=Anopheles gambiae
            GN=AGAP001690 PE=4 SV=4
          Length = 1931

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 23/63 (36%), Positives = 28/63 (44%)
 Frame = -3

Query: 248  VIPDTPEPEIIIFPDSPELEPVPKGALVYQGRSKSRGNTCSSSCRRIPLHTIYQSNLSEP 69
            V+PD  +  II  P  PE E  P    V         +TCSS    +P+     S LSEP
Sbjct: 843  VLPDVTQATII--PPKPEFELPPPACTVVGPSVVGNASTCSSFVSPLPVSIPIDSVLSEP 900

Query: 68   KPI 60
             PI
Sbjct: 901  IPI 903


>tr|Q6LPX8|Q6LPX8_PHOPR Putative uncharacterized protein RSC2121
           OS=Photobacterium profundum GN=RSC2121 PE=4 SV=1
          Length = 171

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 27/114 (23%), Positives = 45/114 (39%)
 Frame = -2

Query: 459 SEWLSPAIYNCYTICQPASMHCLFPRV*FLLGVFL*AQQSPKRLRCAYSLHLVHRRNSGG 280
           S W++ ++++     Q   +  L  R   +  + L A +  +         L  R    G
Sbjct: 28  SPWVAESVFDAVLTEQDDDIESLHQR---MTAILLAASKDKQLALINAHPDLAGRAAVNG 84

Query: 279 TLTRKSSSTQGDSGHSRT*NYHFPRFTGARTSSKGRFSLPRAFQIQRQYLFQFL 118
            LT  S+S Q  +G  +     F RFT    S K RF+ P    ++    +Q L
Sbjct: 85  ELTEASTSEQAGAGIDKCSAEEFERFTHFNNSYKSRFNFPFIMAVKGANRYQIL 138


>tr|Q1YZS1|Q1YZS1_PHOPR Putative uncharacterized protein
           OS=Photobacterium profundum 3TCK GN=P3TCK_01280 PE=4
           SV=1
          Length = 171

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 27/114 (23%), Positives = 45/114 (39%)
 Frame = -2

Query: 459 SEWLSPAIYNCYTICQPASMHCLFPRV*FLLGVFL*AQQSPKRLRCAYSLHLVHRRNSGG 280
           S W++ ++++     Q   +  L  R   +  + L A +  +         L  R    G
Sbjct: 28  SPWVAESVFDAVLTEQDDDIESLHQR---MSDILLAASKDKQLALINAHPDLAGRAAVNG 84

Query: 279 TLTRKSSSTQGDSGHSRT*NYHFPRFTGARTSSKGRFSLPRAFQIQRQYLFQFL 118
            LT  S+S Q  +G  +     F RFT    S K RF+ P    ++    +Q L
Sbjct: 85  ELTEASTSEQAGAGIDKCSEEEFKRFTHFNNSYKSRFNFPFIMAVKGANRYQIL 138


>tr|B3N3H2|B3N3H2_DROER GG10842 OS=Drosophila erecta GN=GG10842 PE=4
           SV=1
          Length = 1463

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -3

Query: 248 VIPDTPEPEIIIFPDSPELEPVPKGALVYQGRSKSRGNTCSS 123
           V+P  P P+I I+ DS + +P PK      G S     TCS+
Sbjct: 588 VVPAVPVPKIEIYEDSEQSQPTPKPRPFNSGTSYDGDETCST 629


>tr|Q0VQ08|Q0VQ08_ALCBS ATPase AAA family related to the helicase
           subunit of the Holliday junction resolvase
           OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 /
           DSM 11573) GN=ABO_1292 PE=4 SV=1
          Length = 443

 Score = 28.5 bits (62), Expect(2) = 5.9
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 111 NSPTHDLPKQFIGAETHSEHSFPLPKTCSQNLFP 10
           N+PT  +  +  GAE H  H FP      +N FP
Sbjct: 367 NAPTQLMKDEGFGAEYHYAHDFPDAFVPGENYFP 400



 Score = 23.9 bits (50), Expect(2) = 5.9
 Identities = 13/46 (28%), Positives = 19/46 (41%)
 Frame = -3

Query: 236 TPEPEIIIFPDSPELEPVPKGALVYQGRSKSRGNTCSSSCRRIPLH 99
           +PE E+ I      L   PK   VY   +++R          +PLH
Sbjct: 319 SPEGELTIAQAIAYLAVAPKSNAVYNAYNQARALVRQQPTDEVPLH 364


>tr|Q178B2|Q178B2_AEDAE Putative uncharacterized protein OS=Aedes
           aegypti GN=AAEL005960 PE=4 SV=1
          Length = 308

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 25/84 (29%), Positives = 35/84 (41%)
 Frame = -2

Query: 288 SGGTLTRKSSSTQGDSGHSRT*NYHFPRFTGARTSSKGRFSLPRAFQIQRQYLFQFLPEN 109
           S  +++ +S S    S  S + +Y  P F+    SS   FSLP +      Y        
Sbjct: 199 SAPSISSQSHSYSAPSLSSHSQSYSAPSFSSQSHSSHASFSLPSS-----TYGAPSFSSG 253

Query: 108 SPTHDLPKQFIGAETHSEHSFPLP 37
           S  H +P    GA +HS  SF  P
Sbjct: 254 SSHHRVPSTVYGAPSHSISSFRPP 277


>tr|A0D199|A0D199_PARTE Chromosome undetermined scaffold_34, whole
           genome shotgun sequence OS=Paramecium tetraurelia
           GN=GSPATT00012340001 PE=4 SV=1
          Length = 115

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = -3

Query: 209 PDSPELEPVPKGALVYQGRSKSRGNTCSSSCRRIPLHTIYQSNLSEPKPIL 57
           PD+P+L+P+ + A           N  S +   IPL TI +  L+ PK I+
Sbjct: 25  PDTPQLKPIKQSAFFIP--ELDLANDVSQTQLNIPLETILEEELTSPKEII 73