BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913995|Adiantum capillus-veneris mRNA, clone:
YMU001_000038_F10.
         (379 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A1WH84|MNMC_VEREI tRNA 5-methylaminomethyl-2-thiouridine bios...    33   0.57 
sp|Q04205|TENS_CHICK Tensin OS=Gallus gallus GN=TNS PE=1 SV=2          32   0.75 
sp|Q27450|CYP1_BRUMA Peptidyl-prolyl cis-trans isomerase 1 OS=Br...    30   3.7  
sp|O49488|FBK93_ARATH Putative F-box/Kelch-repeat protein At4g34...    30   4.8  
sp|Q9NX05|F120C_HUMAN Constitutive coactivator of PPAR-gamma-lik...    30   4.8  
sp|Q6ZNB6|NFXL1_HUMAN NF-X1-type zinc finger protein NFXL1 OS=Ho...    29   6.3  
sp|Q63625|PHRF1_RAT PHD and RING finger domain-containing protei...    29   8.2  
sp|Q9LEM8|NAC2_CHLRE PsbD mRNA maturation factor Nac2, chloropla...    29   8.2  
sp|Q80W04|TMCC2_MOUSE Transmembrane and coiled-coil domains prot...    29   8.3  
sp|O75069|TMCC2_HUMAN Transmembrane and coiled-coil domains prot...    29   8.3  

>sp|A1WH84|MNMC_VEREI tRNA 5-methylaminomethyl-2-thiouridine
           biosynthesis bifunctional protein mnmC
           OS=Verminephrobacter eiseniae (strain EF01-2) GN=mnmC
           PE=3 SV=1
          Length = 623

 Score = 32.7 bits (73), Expect = 0.57
 Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 2/72 (2%)
 Frame = +2

Query: 98  QRRRWR*-PSCKWQSCRRQAHRQDCSPSATSRWNQNQATNSRPACKGSSDHALC-SGYIG 271
           ++ RWR      W  C    HR D SP   +RW+     + R +   ++  AL  SG   
Sbjct: 297 EQARWRLREGLDWSHCGVLEHRADASPGLPARWSDGPGADGRQSAAHAALGALAQSGLPA 356

Query: 272 RQLL*TSPQRAW 307
              +   PQ  W
Sbjct: 357 NASVCWHPQAGW 368


>sp|Q04205|TENS_CHICK Tensin OS=Gallus gallus GN=TNS PE=1 SV=2
          Length = 1744

 Score = 32.3 bits (72), Expect = 0.75
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
 Frame = -3

Query: 233 PCKPAVNWWLGSDSTCLLRLVSSPD------GGPDACSSATCSSVIANAASGQHPDTVW 75
           PC PAVN+ L S    + + V +PD      GG   C ++   SV A   S    D V+
Sbjct: 13  PCSPAVNYELPSPGQSITKQVDTPDATRSPRGGQAHCKASRSMSVTAAMESSCELDLVY 71


>sp|Q27450|CYP1_BRUMA Peptidyl-prolyl cis-trans isomerase 1
           OS=Brugia malayi GN=CYP-1 PE=1 SV=1
          Length = 843

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
 Frame = +2

Query: 8   GQSRGR-PARSECKKHESRRMLLPKQCLDA-GQRRRWR*PSCKWQSCRRQAHRQDCSPSA 181
           G SR R P R E      RR    ++  D    RRR R  S +  S R     +  SPS+
Sbjct: 744 GWSRSRRPTRRELYDERMRRERERRRSFDRYSDRRRTRSRSARRDSDRHSRRSRKRSPSS 803

Query: 182 TSRWNQNQATNSRPACKGSS 241
           +S  +++ +++SR     S+
Sbjct: 804 SSSSSESSSSDSRSTASSSA 823


>sp|O49488|FBK93_ARATH Putative F-box/Kelch-repeat protein At4g34170
           OS=Arabidopsis thaliana GN=At4g34170 PE=2 SV=1
          Length = 293

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 99  WPASRHCLGSNILLLSCFLHSLRAGRPR 16
           WP S +C+  N+ L SCF+H +R   P+
Sbjct: 222 WPGSSYCVIENV-LYSCFVHKIRWYDPK 248


>sp|Q9NX05|F120C_HUMAN Constitutive coactivator of PPAR-gamma-like
           protein 2 OS=Homo sapiens GN=FAM120C PE=2 SV=2
          Length = 1096

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
 Frame = -3

Query: 245 DPTIPCKPAVNWWLGSDSTC-----LLRLVSSPDGGPDACSSATCSSVIANAASGQH 90
           DP +   P  NW +  DS+       L   +SP  GPD+  S++      N AS  H
Sbjct: 484 DPMLQNSPFANWAVSYDSSASQFPNYLPSKASPPLGPDSSHSSSSDGDEPNGASSDH 540


>sp|Q6ZNB6|NFXL1_HUMAN NF-X1-type zinc finger protein NFXL1 OS=Homo
           sapiens GN=NFXL1 PE=1 SV=2
          Length = 911

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 15/46 (32%), Positives = 19/46 (41%)
 Frame = +2

Query: 38  ECKKHESRRMLLPKQCLDAGQRRRWR*PSCKWQSCRRQAHRQDCSP 175
           +C+KH+ RR   P  C    Q    R   C+   C    HR  C P
Sbjct: 475 DCQKHQCRRKCCPGNCPPCDQ-NCGRTLGCRNHKCPSVCHRGSCYP 519


>sp|Q63625|PHRF1_RAT PHD and RING finger domain-containing protein 1
            OS=Rattus norvegicus GN=Phrf1 PE=1 SV=2
          Length = 1685

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +2

Query: 20   GRPARSECKKHESRRMLLPKQCLDAGQRRRWR--*PSCKWQSCRRQAHRQ 163
            G P  S C++HESRR    ++   +G R R R   P    +  RR  HR+
Sbjct: 1105 GSPGSSSCERHESRR----RKRRHSGSRSRGRDGSPHSSLERDRRHKHRE 1150


>sp|Q9LEM8|NAC2_CHLRE PsbD mRNA maturation factor Nac2,
           chloroplastic OS=Chlamydomonas reinhardtii GN=NAC2 PE=1
           SV=1
          Length = 1385

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 20/58 (34%), Positives = 31/58 (53%)
 Frame = -1

Query: 367 ASTSGMPSAQLVDGHPPACRPSSLRRCLQQLPPNIARAQRMIRRSLASRP*IGGLVLI 194
           +S+SG+P     +    A   +SL    ++ PP   RA+ ++RR LA+RP    L LI
Sbjct: 740 SSSSGLPQVSEEEVAAAAADMASLSNMSRRDPP---RAEALLRRLLAARPGDAALWLI 794


>sp|Q80W04|TMCC2_MOUSE Transmembrane and coiled-coil domains protein
           2 OS=Mus musculus GN=Tmcc2 PE=1 SV=1
          Length = 706

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 17/31 (54%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -3

Query: 176 LVSSPD-GGPDACSSATCSSVIANAASGQHP 87
           LVSSP  G  D CSSA+ SS  A + SG  P
Sbjct: 464 LVSSPKYGSDDECSSASASSAGAGSNSGAGP 494


>sp|O75069|TMCC2_HUMAN Transmembrane and coiled-coil domains protein
           2 OS=Homo sapiens GN=TMCC2 PE=2 SV=3
          Length = 709

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 17/31 (54%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -3

Query: 176 LVSSPD-GGPDACSSATCSSVIANAASGQHP 87
           LVSSP  G  D CSSA+ SS  A + SG  P
Sbjct: 467 LVSSPKYGSDDECSSASASSAGAGSNSGAGP 497

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913995|Adiantum capillus-veneris mRNA, clone:
YMU001_000038_F10.
         (379 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SNX6|A9SNX6_PHYPA Predicted protein OS=Physcomitrella paten...    87   4e-16
tr|A9RRM0|A9RRM0_PHYPA Predicted protein OS=Physcomitrella paten...    84   3e-15
tr|Q5B225|Q5B225_EMENI Putative uncharacterized protein OS=Emeri...    35   1.8  
tr|B6KM19|B6KM19_TOXGO U2 snRNP auxiliary factor or splicing fac...    33   5.3  
tr|B0TST8|B0TST8_SHEHH Carbamate kinase OS=Shewanella halifaxens...    33   7.0  
tr|Q580P9|Q580P9_9TRYP Putative uncharacterized protein OS=Trypa...    33   7.0  
tr|Q57YQ1|Q57YQ1_9TRYP Putative uncharacterized protein OS=Trypa...    33   7.0  
tr|Q2UQX1|Q2UQX1_ASPOR Predicted protein OS=Aspergillus oryzae G...    33   9.2  

>tr|A9SNX6|A9SNX6_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_233744 PE=4 SV=1
          Length = 637

 Score = 87.0 bits (214), Expect = 4e-16
 Identities = 46/125 (36%), Positives = 61/125 (48%)
 Frame = -3

Query: 377 WALSFHFRHAFCTACGRPPTSMPPKLFAEMFXXXXXXXXXXXTHDPTIPCKPAVNWWLGS 198
           WALSFH RH FCT CGR P S  P+  AEM+             +          W +G 
Sbjct: 380 WALSFHHRHTFCTGCGRCPVSFSPRHLAEMYMAAAMYYSNENFSNKQ-------RWSVGC 432

Query: 197 DSTCLLRLVSSPDGGPDACSSATCSSVIANAASGQHPDTVWAATFFYSHAFCTRCGQAAH 18
           DSTC L+L+++       C++A         ++       WA + +YSHAFCTRCGQAA 
Sbjct: 433 DSTCSLKLLNAKPHCVCPCAAADGFFDYEGPSNSPQKLPAWAVSTYYSHAFCTRCGQAAD 492

Query: 17  GSALL 3
              L+
Sbjct: 493 ERTLI 497


>tr|A9RRM0|A9RRM0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_160619 PE=4 SV=1
          Length = 576

 Score = 84.0 bits (206), Expect = 3e-15
 Identities = 48/131 (36%), Positives = 62/131 (47%), Gaps = 6/131 (4%)
 Frame = -3

Query: 377 WALSFHFRHAFCTACGRPPTSMPPKLFAEMFXXXXXXXXXXXTHDPTIPCKPAVNWWLGS 198
           WALSFH RH FCT CGR P S  P+  AEM+             +          W +G 
Sbjct: 404 WALSFHHRHTFCTGCGRCPVSFSPRHLAEMYMAAAMYYSNENFSNKQ-------RWSVGC 456

Query: 197 DSTCLLRLVSS------PDGGPDACSSATCSSVIANAASGQHPDTVWAATFFYSHAFCTR 36
           DSTC L+L+++      P    D C     S++  +          WA + +YSHAFCTR
Sbjct: 457 DSTCSLKLLNAKLHCVCPCARTDNCLDNENSNISLSKL------PAWAVSTYYSHAFCTR 510

Query: 35  CGQAAHGSALL 3
           CGQAA    L+
Sbjct: 511 CGQAADERTLI 521


>tr|Q5B225|Q5B225_EMENI Putative uncharacterized protein
           OS=Emericella nidulans GN=AN5405.2 PE=4 SV=1
          Length = 614

 Score = 35.0 bits (79), Expect = 1.8
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
 Frame = +2

Query: 14  SRGRPARSECKKH-----ESRRMLLPKQCLDAGQRRRWR*PSCKWQSCRRQAHRQ--DCS 172
           SR RP R + + H     E      PK+   AG R R      +W   RR  H++  D  
Sbjct: 474 SRNRPYRDDDEPHRDTDEEMVDYRAPKRIATAGARDR------RWGRGRRVIHQEHSDIE 527

Query: 173 PSATSRWNQNQATNSRPACKGSSDHALCS 259
            S  +R +  +++N+R  C+ ++ HAL S
Sbjct: 528 TSRRARKHAQRSSNARLVCEMTAAHALIS 556


>tr|B6KM19|B6KM19_TOXGO U2 snRNP auxiliary factor or splicing
           factor, putative OS=Toxoplasma gondii ME49
           GN=TGME49_034520 PE=4 SV=1
          Length = 553

 Score = 33.5 bits (75), Expect = 5.3
 Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = +2

Query: 8   GQSRGRPARSECKKH-ESRRMLLPKQCLDAGQRRRWR*PSCKWQSCRRQAHRQDCSPSAT 184
           GQS GR +  E KK  +SRR   P    D+G+ RR R  S + Q  RR       SPSA+
Sbjct: 20  GQSNGRSSSKEGKKDSKSRRSRSP----DSGRHRRSRSGSTERQKTRRSKWDSKVSPSAS 75

Query: 185 S 187
           +
Sbjct: 76  A 76


>tr|B0TST8|B0TST8_SHEHH Carbamate kinase OS=Shewanella halifaxensis
           (strain HAW-EB4) GN=Shal_0688 PE=4 SV=1
          Length = 313

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 28/84 (33%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
 Frame = +1

Query: 1   LRRAEPWAACPQRVQKA*E*KNVAAQTVSGCWPEAALAMTELQVAELQASGPPSGLLTKR 180
           LRR EP  A  QR+  A   K +AA T             +  V  +  +GP  GLL  +
Sbjct: 16  LRRGEPLEADVQRINIASAVKAIAALT------------ADWNVVLVHGNGPQVGLLALQ 63

Query: 181 N---KQVESEPSHQFTAGLQGIVG 243
           N   KQV+  P     A  QG++G
Sbjct: 64  NSDYKQVKPYPLDILVAETQGMIG 87


>tr|Q580P9|Q580P9_9TRYP Putative uncharacterized protein
           OS=Trypanosoma brucei GN=Tb927.4.5380 PE=4 SV=1
          Length = 1460

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = +3

Query: 228 ARDRRIMRCALAILGGSCCKHLRKELGRH 314
           AR  R+++CA   LGG  CKHL   L RH
Sbjct: 125 ARGNRLVKCASTELGGVFCKHLTFPLHRH 153


>tr|Q57YQ1|Q57YQ1_9TRYP Putative uncharacterized protein
           OS=Trypanosoma brucei GN=Tb927.8.6940 PE=4 SV=1
          Length = 1460

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = +3

Query: 228 ARDRRIMRCALAILGGSCCKHLRKELGRH 314
           AR  R+++CA   LGG  CKHL   L RH
Sbjct: 125 ARGNRLVKCASTELGGVFCKHLTFPLHRH 153


>tr|Q2UQX1|Q2UQX1_ASPOR Predicted protein OS=Aspergillus oryzae
           GN=AO090005001067 PE=4 SV=1
          Length = 700

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 14/55 (25%), Positives = 28/55 (50%)
 Frame = +3

Query: 207 PPIHGRLARDRRIMRCALAILGGSCCKHLRKELGRHAGGWPSTSCAEGMPEVEAK 371
           P  H  L   +++ +  +A++G S    + ++L  H   W  T C   +P+V+A+
Sbjct: 260 PADHFNLVYTQQVFKTNVAVVGASGYNWICEDLEHHQYEWQLTPCITSLPQVQAR 314