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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913997
Clone id YMU001_000038_F12
Library
Length 466
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000038_F12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GAACCCGATGTACTGAACCTTCTTGTTCTTGTCAAGCACGGCAAACACGGAGGCTGCAGT
ATTTGGCTCAACTGGAGGTTTGATTCTACCGTGTGAATTGATAAACCCATTAATGGGGAG
CTCGTTTAGTGAAGGGATAGTGACAGTAGAGGTGGTTGGAGGAGCGGCCGTAGACGCAAC
CAAAGCAAGGAGGAATGTTTTCTGTGTGCTGTTGTTAAGTGTGGCTGTGGATTCCTTTCT
ACAAACCCATAACCCAGATTTCCTCAGCCCATTAAAGGAGGACGGTATTTTGGCTGATGC
CGAGCTCTTCTGCGTGTAGCTATGGCGAGAACCCACAGCCCCCGCTGCAGCAGCAATCTG
CTGGCGGGATGAAAGAGACGATACCATTTTGAGGTTCTGCAGGCTAATGTAAGTAATGTA
GATGCTGCGGATGTAGAGCTCTGCTACCTTCCTTCGCTGCTTCAGA
■■Homology search results ■■ -
sp_hit_id P17594
Definition sp|P17594|POLG_EMCVD Genome polyprotein OS=Encephalomyocarditis virus (strain emc-d diabetogenic)
Align length 77
Score (bit) 30.0
E-value 5.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913997|Adiantum capillus-veneris mRNA, clone:
YMU001_000038_F12.
         (466 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P17594|POLG_EMCVD Genome polyprotein OS=Encephalomyocarditis ...    30   5.2  
sp|P17593|POLG_EMCVB Genome polyprotein OS=Encephalomyocarditis ...    30   5.2  
sp|Q822F8|AROC_CHLCV Chorismate synthase OS=Chlamydophila caviae...    30   5.2  
sp|Q8C0X0|LCA5L_MOUSE Lebercilin-like protein OS=Mus musculus GN...    29   8.9  
sp|Q6NWF6|K2C8_DANRE Keratin, type II cytoskeletal 8 OS=Danio re...    29   8.9  
sp|Q9FIA0|CNGT2_ARATH Cytokinin-N-glucosyltransferase 2 OS=Arabi...    29   8.9  

>sp|P17594|POLG_EMCVD Genome polyprotein OS=Encephalomyocarditis virus
            (strain emc-d diabetogenic) PE=1 SV=2
          Length = 2292

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
 Frame = +2

Query: 47   TEAAVFGSTGGLILPCELINPLMGSSFSEGIVTVEVVGGAAVDATKARRNVFCVLLLSVA 226
            T+ A   S    +LP +L + +MGS+F+        +  A  DA KA R +  +  LS A
Sbjct: 1057 TQGAAVSSMAQTLLPNDLASKVMGSAFT-------ALLDANEDAQKAMRIIKTLSSLSDA 1109

Query: 227  VDSFLQT-HNPDFLSPL 274
             ++  +T +NP+F   L
Sbjct: 1110 WENVKETLNNPEFWKQL 1126


>sp|P17593|POLG_EMCVB Genome polyprotein OS=Encephalomyocarditis virus
            (strain emc-b nondiabetogenic) PE=3 SV=1
          Length = 2292

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
 Frame = +2

Query: 47   TEAAVFGSTGGLILPCELINPLMGSSFSEGIVTVEVVGGAAVDATKARRNVFCVLLLSVA 226
            T+ A   S    +LP +L + +MGS+F+        +  A  DA KA R +  +  LS A
Sbjct: 1057 TQGAAVSSMAQTLLPNDLASKVMGSAFT-------ALLDANEDAQKAMRIIKTLSSLSDA 1109

Query: 227  VDSFLQT-HNPDFLSPL 274
             ++  +T +NP+F   L
Sbjct: 1110 WENVKETLNNPEFWKQL 1126


>sp|Q822F8|AROC_CHLCV Chorismate synthase OS=Chlamydophila caviae
           GN=aroC PE=3 SV=1
          Length = 359

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 12/77 (15%)
 Frame = +2

Query: 98  LINPLMGSSFSEGIVTVEVVGGAAVDATKARRNVFCVLLLSVAVDSFLQT---------- 247
           L++PL G   S       V  G       A  +++C+  LS      ++T          
Sbjct: 115 LVDPLGGGRSSARETACRVAAGVIAAKILAHYDIYCLAFLSKLGKESIETYPKLSKEFAQ 174

Query: 248 --HNPDFLSPLKEDGIL 292
             +N  FLSPL  D IL
Sbjct: 175 NIYNSPFLSPLDNDSIL 191


>sp|Q8C0X0|LCA5L_MOUSE Lebercilin-like protein OS=Mus musculus
           GN=Lca5l PE=2 SV=1
          Length = 741

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 30/87 (34%), Positives = 39/87 (44%), Gaps = 6/87 (6%)
 Frame = -2

Query: 462 KQRRKVAELYIRSIYITYISLQNLK------MVSSLSSRQQIAAAAGAVGSRHSYTQKSS 301
           K + K  EL I++IY   I L+NL        VSS  S Q    +  +V  RH  TQKS 
Sbjct: 328 KLKEKDRELEIKNIYTNRI-LKNLNDKEDYPKVSSTKSVQADRKSLPSVNMRHQETQKSD 386

Query: 300 ASAKIPSSFNGLRKSGLWVCRKESTAT 220
               I     G R  G    +++ST T
Sbjct: 387 VPFWIT---KGKRGKGNIAHKEKSTET 410


>sp|Q6NWF6|K2C8_DANRE Keratin, type II cytoskeletal 8 OS=Danio rerio
           GN=krt8 PE=1 SV=1
          Length = 520

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -2

Query: 321 SYTQKSSASAKIPSSFNGLRKSGLWVCRKESTA 223
           SYT KSS+S  IP +F+ L  SG  + R+  +A
Sbjct: 9   SYTVKSSSSGSIPRNFSSLSYSGPSMSRQSYSA 41


>sp|Q9FIA0|CNGT2_ARATH Cytokinin-N-glucosyltransferase 2
           OS=Arabidopsis thaliana GN=UGT76C2 PE=1 SV=1
          Length = 450

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = -2

Query: 447 VAELYIRSIYITYISLQNLKMVSSLSSRQQIAAAAGAVGSRHSYTQKSSAS 295
           V E  IRS  + Y+S + L+  S   S +       A+G  HSY   SS+S
Sbjct: 195 VVETTIRSSGLIYMSCEELEKDSLTLSNEIFKVPVFAIGPFHSYFSASSSS 245
tr_hit_id A8IKC2
Definition tr|A8IKC2|A8IKC2_AZOC5 Putative ABC transporter permease protein OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571)
Align length 53
Score (bit) 34.7
E-value 2.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913997|Adiantum capillus-veneris mRNA, clone:
YMU001_000038_F12.
         (466 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8IKC2|A8IKC2_AZOC5 Putative ABC transporter permease protein...    35   2.5  
tr|A5EJZ3|A5EJZ3_BRASB Putative Branched-chain amino acid ABC tr...    34   4.2  
tr|A4YVA1|A4YVA1_BRASO Putative Branched-chain amino acid ABC tr...    34   4.2  
tr|Q8DIK3|Q8DIK3_THEEB Tll1582 protein OS=Thermosynechococcus el...    33   7.2  
tr|B8GUN1|B8GUN1_9GAMM Putative uncharacterized protein OS=Thioa...    33   9.1  
tr|A1HS95|A1HS95_9FIRM Anaerobic ribonucleoside-triphosphate red...    33   9.4  

>tr|A8IKC2|A8IKC2_AZOC5 Putative ABC transporter permease protein
           OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM
           5975 / ORS 571) GN=AZC_3888 PE=4 SV=1
          Length = 290

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 25/53 (47%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +2

Query: 17  TFLFLSSTANTEAAVFGSTGGLILPCELINPLMGSSF-SEGIVTVEVVGGAAV 172
           T L  S T    AA+ G  GGL  P   + P MG++F  E  VTV VVGGA V
Sbjct: 184 TRLIYSLTFGLGAALAGLAGGLYAPTMTLVPTMGATFIMEAFVTV-VVGGADV 235


>tr|A5EJZ3|A5EJZ3_BRASB Putative Branched-chain amino acid ABC
           transporter (Permease protein) OS=Bradyrhizobium sp.
           (strain BTAi1 / ATCC BAA-1182) GN=BBta_4451 PE=4 SV=1
          Length = 288

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 19/46 (41%), Positives = 24/46 (52%)
 Frame = +2

Query: 35  STANTEAAVFGSTGGLILPCELINPLMGSSFSEGIVTVEVVGGAAV 172
           ST    AAV G  GGL+ P   I P+MG ++        V GGAA+
Sbjct: 188 STFALGAAVTGLAGGLLAPVSGITPVMGGAYVAKAFMTVVGGGAAI 233


>tr|A4YVA1|A4YVA1_BRASO Putative Branched-chain amino acid ABC
           transporter (Permease protein) OS=Bradyrhizobium sp.
           (strain ORS278) GN=BRADO4075 PE=4 SV=1
          Length = 288

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 19/46 (41%), Positives = 24/46 (52%)
 Frame = +2

Query: 35  STANTEAAVFGSTGGLILPCELINPLMGSSFSEGIVTVEVVGGAAV 172
           ST    AAV G  GGL+ P   I P+MG ++        V GGAA+
Sbjct: 188 STFALGAAVTGLAGGLLAPVSGITPVMGGAYVAKAFMTVVGGGAAI 233


>tr|Q8DIK3|Q8DIK3_THEEB Tll1582 protein OS=Thermosynechococcus
           elongatus (strain BP-1) GN=tll1582 PE=4 SV=1
          Length = 177

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 15/41 (36%), Positives = 26/41 (63%)
 Frame = -2

Query: 123 ELPINGFINSHGRIKPPVEPNTAASVFAVLDKNKKVQYIGF 1
           ELP++ +I+  GR+ P ++   A  ++A+ D    VQYIG+
Sbjct: 10  ELPLHPYIDGSGRVAPDLK--GAIGLYAIFDAAGSVQYIGY 48


>tr|B8GUN1|B8GUN1_9GAMM Putative uncharacterized protein
           OS=Thioalkalivibrio sp. HL-EbGR7 GN=Tgr7_0293 PE=4 SV=1
          Length = 72

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 13/18 (72%), Positives = 14/18 (77%)
 Frame = +3

Query: 315 CSYGENPQPPLQQQSAGG 368
           CSYG+ P PP QQQS GG
Sbjct: 52  CSYGDVPCPPTQQQSGGG 69


>tr|A1HS95|A1HS95_9FIRM Anaerobic ribonucleoside-triphosphate
           reductase OS=Thermosinus carboxydivorans Nor1
           GN=TcarDRAFT_0565 PE=4 SV=1
          Length = 671

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = -2

Query: 111 NGFINSHGRIKPPVEPNTAASVFAVL 34
           NGF N HG I+PP  P++A ++ A++
Sbjct: 182 NGFNNGHGYIRPPKRPSSATALAAII 207