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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914004
Clone id YMU001_000038_G07
Library
Length 450
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000038_G07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ACCTGGCGGGGATCAATCAATCATTACTAATCCAGATTCCCATTCTTTGCTTCAGCTTGC
TTTGTCTGCAGTTTTGTACTTGAACAGGGCAGCACGGCTGCACAACGGGGCACTCGACCA
TACTCATAGATGTTATCTGTGTGTGGTAATTATGAAACCCACAATTTGAACATTGCATAT
ATTGTTGCCAGAAGTTACCTTTTCAGGAATGACTTGTGAATAATGAAAGTATCAAAACTA
TCATTTCAGGGAGTGACAACACTATCTGATCAAAAGCTGCTGCTGCTGCAAGCCATTCCA
TGAGCATCTTCCACCTTTGAAACAGTAATGAAAGTTCGCGTCCATAATGATCTTCTGTCT
TCCTATCTTCAATATAAATGATGTCGCAGCATGTGTGCGTACATCTTCCTGATGGTATAC
TGCCTCCTTGAGGTGTATTGACACCTTCTC
■■Homology search results ■■ -
sp_hit_id Q9SS60
Definition sp|Q9SS60|PP210_ARATH Pentatricopeptide repeat-containing protein At3g03580 OS=Arabidopsis thaliana
Align length 32
Score (bit) 30.0
E-value 4.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914004|Adiantum capillus-veneris mRNA, clone:
YMU001_000038_G07.
         (450 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9SS60|PP210_ARATH Pentatricopeptide repeat-containing protei...    30   4.8  
sp|O23169|PP353_ARATH Pentatricopeptide repeat-containing protei...    30   6.3  
sp|P84397|PA22_BOTIN Phospholipase A2 2 (Fragments) OS=Bothrops ...    29   8.2  

>sp|Q9SS60|PP210_ARATH Pentatricopeptide repeat-containing protein
           At3g03580 OS=Arabidopsis thaliana GN=PCMP-H23 PE=2 SV=1
          Length = 882

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -1

Query: 393 HAATSFILKI-GRQKIIMDANFHYCFKGGRCS 301
           H  T  I KI GR+ ++ DAN  + FK G CS
Sbjct: 846 HEVTKLISKIVGREILVRDANRFHLFKDGTCS 877


>sp|O23169|PP353_ARATH Pentatricopeptide repeat-containing protein
           At4g37170 OS=Arabidopsis thaliana GN=PCMP-H5 PE=2 SV=1
          Length = 691

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -1

Query: 402 VRTHAATSFILKIGRQKI-IMDANFHYCFKGGRCS 301
           V  H A  FI  I ++KI + D+   +CF+ G+CS
Sbjct: 652 VDCHGAIKFISNITKRKITVRDSTRFHCFENGQCS 686


>sp|P84397|PA22_BOTIN Phospholipase A2 2 (Fragments) OS=Bothrops
           insularis PE=1 SV=2
          Length = 107

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 15/57 (26%), Positives = 23/57 (40%)
 Frame = -1

Query: 333 FHYCFKGGRCSWNGXXXXXXLIR*CCHSLK**F*YFHYSQVIPEKVTSGNNICNVQI 163
           FHY   G  C W G       +  CC+        + YS+   + V  G++ C  Q+
Sbjct: 19  FHYLSYGCYCGWGGIEPKCCYVHDCCYGK---LDLYTYSKETGDLVCGGDDPCQKQL 72
tr_hit_id A2QPB5
Definition tr|A2QPB5|A2QPB5_ASPNC Remark: ntf1 plays an important role in regulating nmt1 expression OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
Align length 58
Score (bit) 38.9
E-value 0.13
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914004|Adiantum capillus-veneris mRNA, clone:
YMU001_000038_G07.
         (450 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A2QPB5|A2QPB5_ASPNC Remark: ntf1 plays an important role in r...    39   0.13 
tr|A7PYM3|A7PYM3_VITVI Chromosome chr12 scaffold_38, whole genom...    35   1.4  

>tr|A2QPB5|A2QPB5_ASPNC Remark: ntf1 plays an important role in
           regulating nmt1 expression OS=Aspergillus niger (strain
           CBS 513.88 / FGSC A1513) GN=An07g08870 PE=4 SV=1
          Length = 890

 Score = 38.9 bits (89), Expect = 0.13
 Identities = 18/58 (31%), Positives = 32/58 (55%)
 Frame = -3

Query: 433 PQGGSIPSGRCTHTCCDIIYIEDRKTEDHYGRELSLLFQRWKMLMEWLAAAAAFDQIV 260
           P+ GS PS +C+HT   +  ++ R+ + +YGR  SL     +  +EW+      D+I+
Sbjct: 121 PEDGSSPSKKCSHTHAPVFKLDSREDDRYYGRSSSLSILS-REALEWIKHKTGEDKIL 177


>tr|A7PYM3|A7PYM3_VITVI Chromosome chr12 scaffold_38, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00026498001
           PE=4 SV=1
          Length = 643

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 18/32 (56%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = -1

Query: 393 HAATSFILKIGRQKIIM-DANFHYCFKGGRCS 301
           HAAT FI KI  ++II+ D N  +CFK G CS
Sbjct: 607 HAATKFISKIYEREIIVRDLNRFHCFKDGSCS 638