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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914014
Clone id YMU001_000038_H06
Library
Length 438
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000038_H06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AATTGGAAGAATTCGCGGCCGCGAATGGAAGAATTCGCGTTTTTCTGATTGACATATTGG
GAGGTTATTTTTGGGCGTCTTGAAGGACACATTCTAGGATGCCCCTTCACCTCTTCTCTC
ATTGTGGACTGGAAGGTTGTCATCTCGCATATGCAATGGCATGGTCGCCAACACCTTCTT
GGCAATTCCCTTCGATCGGAGATCTTGCATTGGAGCAAGGATTTCTCCTCAACTTTAGCT
CAATGCTCTCCTCATCAGGCCTATTTTCTGTCACAAAAAGGAATATACCAGGTGCATCAG
GTGGTAGATGATACTGGACATGTTCTTTCATTTCCTGATGCGGCATCTCGCTTTAGCTTG
GGGCACCATTACTCTTCTCTATGGCGGGAGATTCAGAGAATGCTTGCTGATTTTTCTCCC
GTTGCTCCTTTGAATGTG
■■Homology search results ■■ -
sp_hit_id Q6F6B3
Definition sp|Q6F6B3|TANC1_RAT Protein TANC1 OS=Rattus norvegicus
Align length 102
Score (bit) 33.5
E-value 0.34
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914014|Adiantum capillus-veneris mRNA, clone:
YMU001_000038_H06.
         (412 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6F6B3|TANC1_RAT Protein TANC1 OS=Rattus norvegicus GN=Tanc1 ...    33   0.34 
sp|Q0P670|CQ074_HUMAN Uncharacterized protein C17orf74 OS=Homo s...    32   0.76 
sp|O14255|GCS1_SCHPO Probable mannosyl-oligosaccharide glucosida...    30   2.9  
sp|Q8D4Y9|COLA_VIBVU Microbial collagenase OS=Vibrio vulnificus ...    30   2.9  
sp|Q0VGY8|TANC1_MOUSE Protein TANC1 OS=Mus musculus GN=Tanc1 PE=...    30   2.9  
sp|P09546|PUTA_ECOLI Bifunctional protein putA OS=Escherichia co...    30   2.9  
sp|Q3A1W7|Y2401_PELCD UPF0272 protein Pcar_2401 OS=Pelobacter ca...    30   3.8  
sp|Q99LH1|NOG2_MOUSE Nucleolar GTP-binding protein 2 OS=Mus musc...    30   3.8  
sp|Q8KGG6|DNAA_CHLTE Chromosomal replication initiator protein d...    30   3.8  
sp|Q56696|COLA_VIBPA Microbial collagenase OS=Vibrio parahaemoly...    29   6.5  
sp|Q9A6X2|NUOC_CAUCR NADH-quinone oxidoreductase subunit C OS=Ca...    29   8.4  
sp|Q9C0D5|TANC1_HUMAN Protein TANC1 OS=Homo sapiens GN=TANC1 PE=...    29   8.5  

>sp|Q6F6B3|TANC1_RAT Protein TANC1 OS=Rattus norvegicus GN=Tanc1 PE=1
            SV=1
          Length = 1849

 Score = 33.5 bits (75), Expect = 0.34
 Identities = 26/102 (25%), Positives = 43/102 (42%)
 Frame = -3

Query: 401  EQREKNQQAFSESPAIEKSNGAPS*SEMPHQEMKEHVQYHLPPDAPGIFLFVTENRPDEE 222
            +Q ++NQQ   ++P     N + +  E P   +K+H       +         +    EE
Sbjct: 1408 KQLQRNQQQKQQAPLPAPPNDSDNDEEAPASSLKDHFPIEEAEE--------EDTSSQEE 1459

Query: 221  SIELKLRRNPCSNARSPIEGNCQEGVGDHAIAYAR*QPSSPQ 96
            SI    R  P  +  SP   N QEG+       ++ +P+SPQ
Sbjct: 1460 SISPTPRSQPPPSVPSPYIRNLQEGL------QSKGRPASPQ 1495


>sp|Q0P670|CQ074_HUMAN Uncharacterized protein C17orf74 OS=Homo
           sapiens GN=C17orf74 PE=2 SV=1
          Length = 408

 Score = 32.3 bits (72), Expect = 0.76
 Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
 Frame = +2

Query: 92  LIVDWKVVISHMQWHGRQHLLGNSLRSEILHWSKDFSSTLAQCSPHQAYFLSQKGIYQVH 271
           ++V+  + ++ M WHG Q+ L      +++ W+   +   A  SP        + ++ +H
Sbjct: 35  VLVNIGINVATMMWHGLQNAL-----DKMIDWATQKNEIQASESPPSGPPDKAQDVH-IH 88

Query: 272 QVVDDTGHVLSFPDAASRFSL----GHHYSSLWREIQR 373
            ++D     +S P   S FS      HH SSL R ++R
Sbjct: 89  CILDPVQVKMSRPTQYSSFSCHHFSNHHSSSLLRCVRR 126


>sp|O14255|GCS1_SCHPO Probable mannosyl-oligosaccharide glucosidase
           OS=Schizosaccharomyces pombe GN=SPAC6G10.09 PE=2 SV=1
          Length = 808

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = +2

Query: 29  YWEVIFGRLEGHILGCPFTSSLIVDWKVVISHMQWHGRQHLLGNSLRSEI 178
           YW+  F  L   +    F+  ++  W  +++   W GR+ +LG   RS++
Sbjct: 410 YWDEGFHLLPVGLWDNDFSLEILKSWFSLVNEDGWVGREQILGEEARSKV 459


>sp|Q8D4Y9|COLA_VIBVU Microbial collagenase OS=Vibrio vulnificus
           GN=VV2_1146 PE=3 SV=1
          Length = 807

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 28/107 (26%), Positives = 42/107 (39%), Gaps = 24/107 (22%)
 Frame = +2

Query: 152 LGNSLRSEILHWSKD-FSSTLAQCSPH----------QAYFLSQKGIYQVHQVVDDTGHV 298
           L N  RS   H + D F   LA  + H           A+ L     + V   + +TG +
Sbjct: 194 LNNLFRSMAGHIANDAFYRYLASNTQHIDMLEKFANDNAWALDTDADFLVFNALRETGRL 253

Query: 299 LSFPDAAS-------------RFSLGHHYSSLWREIQRMLADFSPVA 400
           ++ PD A+             R+ LG  +  LW     ML+ F+P A
Sbjct: 254 IASPDKATKQKAVQVMQRVMARYPLGSEHDKLWLAAVEMLSYFAPEA 300


>sp|Q0VGY8|TANC1_MOUSE Protein TANC1 OS=Mus musculus GN=Tanc1 PE=2
            SV=2
          Length = 1856

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 21/86 (24%), Positives = 35/86 (40%)
 Frame = -3

Query: 401  EQREKNQQAFSESPAIEKSNGAPS*SEMPHQEMKEHVQYHLPPDAPGIFLFVTENRPDEE 222
            +Q ++NQQ   + P    +N + +  + P   +K+H       +         +    EE
Sbjct: 1415 KQLQRNQQQKQQGPPPAPANDSDNEEDAPASSLKDHFPIEEAEE--------EDTSSQEE 1466

Query: 221  SIELKLRRNPCSNARSPIEGNCQEGV 144
            SI    R  P  +  SP   N QEG+
Sbjct: 1467 SISPTPRSQPPPSVPSPYIRNLQEGL 1492


>sp|P09546|PUTA_ECOLI Bifunctional protein putA OS=Escherichia coli
           (strain K12) GN=putA PE=1 SV=3
          Length = 1320

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
 Frame = -3

Query: 389 KNQQAFSESPAI-----EKSNGAPS*SEMPHQEMKEHVQYHLPPDAPGIFLFVTENRPDE 225
           +N     E PA+      +S+ AP+ +E PHQ   +  +  LP       +     RP+ 
Sbjct: 45  ENSDTLPELPALLSGAANESDEAPTPAEEPHQPFLDFAEQILPQSVSRAAITAAYRRPET 104

Query: 224 ESIELKLRR 198
           E++ + L +
Sbjct: 105 EAVSMLLEQ 113


>sp|Q3A1W7|Y2401_PELCD UPF0272 protein Pcar_2401 OS=Pelobacter
           carbinolicus (strain DSM 2380 / Gra Bd 1) GN=Pcar_2401
           PE=3 SV=1
          Length = 394

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = +2

Query: 260 YQVHQVVDDTGHVLSFPDAASRFSLGH---HYSSLWREIQRMLADFS 391
           YQ+HQ   +  HV     AA +  + H   H+   WR+I RMLA+ S
Sbjct: 43  YQLHQQRTERQHV-----AACKIIVEHEEQHHHRTWRDIDRMLAESS 84


>sp|Q99LH1|NOG2_MOUSE Nucleolar GTP-binding protein 2 OS=Mus
           musculus GN=Gnl2 PE=2 SV=1
          Length = 728

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -3

Query: 281 LPPDAP-GIFLFVTENRPDEESIELKLRRNPCSNARSPIEGNCQE 150
           LPP +P  +    T+N P+EE+ E ++ R+     + P EG+C +
Sbjct: 473 LPPSSPLEVPTETTQNNPEEETTETEVERSDSITEKEP-EGDCSQ 516


>sp|Q8KGG6|DNAA_CHLTE Chromosomal replication initiator protein dnaA
           OS=Chlorobium tepidum GN=dnaA PE=3 SV=1
          Length = 493

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 19/70 (27%), Positives = 29/70 (41%)
 Frame = -3

Query: 365 SPAIEKSNGAPS*SEMPHQEMKEHVQYHLPPDAPGIFLFVTENRPDEESIELKLRRNPCS 186
           S  I+KS G P   E+PHQ      +  + P+APG        R +      +   NP  
Sbjct: 99  SIVIDKSQGQPVTIELPHQIDAAPAERSVRPEAPGQKASAERERLEIARPRFESNLNPKY 158

Query: 185 NARSPIEGNC 156
              + + G+C
Sbjct: 159 TFSTLVRGDC 168


>sp|Q56696|COLA_VIBPA Microbial collagenase OS=Vibrio
           parahaemolyticus GN=prt PE=1 SV=2
          Length = 816

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 13/76 (17%)
 Frame = +2

Query: 206 TLAQCSPHQAYFLSQKGIYQVHQVVDDTGHVLSFPD-------------AASRFSLGHHY 346
           TLA+ +   A+ L     + V   + +TG +L+ PD                R+ LG  +
Sbjct: 224 TLARFASDNAWALDTDANFIVFNALRETGRLLASPDQETKRKALAVMQQVMQRYPLGSEH 283

Query: 347 SSLWREIQRMLADFSP 394
             LW     M++ ++P
Sbjct: 284 DKLWLAAVEMMSYYAP 299
tr_hit_id Q9NAR2
Definition tr|Q9NAR2|Q9NAR2_CAEEL Protein C28D4.7, confirmed by transcript evidence OS=Caenorhabditis elegans
Align length 86
Score (bit) 37.0
E-value 0.49
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914014|Adiantum capillus-veneris mRNA, clone:
YMU001_000038_H06.
         (412 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9NAR2|Q9NAR2_CAEEL Protein C28D4.7, confirmed by transcript ...    37   0.49 
tr|B1K9G7|B1K9G7_BURCC FAD dependent oxidoreductase OS=Burkholde...    33   7.1  
tr|B8ADU4|B8ADU4_ORYSI Putative uncharacterized protein OS=Oryza...    33   7.1  
tr|O02226|O02226_CAEEL Protein C28D4.4, confirmed by transcript ...    33   9.3  
tr|Q6RUK3|Q6RUK3_TRIMO Putative uncharacterized protein OS=Triti...    28   9.4  

>tr|Q9NAR2|Q9NAR2_CAEEL Protein C28D4.7, confirmed by transcript
           evidence OS=Caenorhabditis elegans GN=C28D4.7 PE=2 SV=1
          Length = 339

 Score = 37.0 bits (84), Expect = 0.49
 Identities = 25/86 (29%), Positives = 39/86 (45%)
 Frame = +2

Query: 101 DWKVVISHMQWHGRQHLLGNSLRSEILHWSKDFSSTLAQCSPHQAYFLSQKGIYQVHQVV 280
           D K++  +M+ +G Q L  N  R++I  W K F    A       +F   KG  ++ Q  
Sbjct: 49  DEKMIDEYMKVYGNQRL--NFKRNDISMWMKSFEGRYA------LWFTCPKGTNKIIQ-- 98

Query: 281 DDTGHVLSFPDAASRFSLGHHYSSLW 358
             T HV++FP   S     H Y  ++
Sbjct: 99  --TSHVITFPPIPSNNDTNHQYRGMF 122


>tr|B1K9G7|B1K9G7_BURCC FAD dependent oxidoreductase OS=Burkholderia
           cenocepacia (strain MC0-3) GN=Bcenmc03_3378 PE=4 SV=1
          Length = 375

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 9/60 (15%)
 Frame = +2

Query: 233 AYFLSQKGIYQVHQVVDDT---------GHVLSFPDAASRFSLGHHYSSLWREIQRMLAD 385
           A+ L+Q+G+  +  VVDD          GH+++  D A+  +L H+   LWR + R + D
Sbjct: 21  AHELAQRGLRVL--VVDDASGGATGAGMGHLVAMDDNAAELALSHYSIELWRALSREMPD 78


>tr|B8ADU4|B8ADU4_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_06289 PE=4 SV=1
          Length = 721

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +2

Query: 191 KDFSSTLAQCSPHQAYFLSQKGIYQVHQVVDDTGHVLSFPD 313
           K  SST + C     +++SQ+GI+ V +V  D  H L  PD
Sbjct: 137 KKRSSTRSDCKARLQFYISQEGIWTVQKVELDHNHYLVSPD 177


>tr|O02226|O02226_CAEEL Protein C28D4.4, confirmed by transcript
           evidence OS=Caenorhabditis elegans GN=C28D4.4 PE=2 SV=2
          Length = 353

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 24/82 (29%), Positives = 39/82 (47%)
 Frame = +2

Query: 101 DWKVVISHMQWHGRQHLLGNSLRSEILHWSKDFSSTLAQCSPHQAYFLSQKGIYQVHQVV 280
           D K+V  +M+ +G Q L  N  R++I  W K F  +      +  + +  KG  ++ Q+ 
Sbjct: 50  DEKMVDEYMKVYGNQRL--NFKRNDIDIWRKSFKDS------YSLWLVCLKGTNKIVQM- 100

Query: 281 DDTGHVLSFPDAASRFSLGHHY 346
               HVL+FP   S   + H Y
Sbjct: 101 ---SHVLNFPPLPSHNDILHQY 119


>tr|Q6RUK3|Q6RUK3_TRIMO Putative uncharacterized protein OS=Triticum
           monococcum GN=109N23.4 PE=4 SV=1
          Length = 553

 Score = 28.5 bits (62), Expect(2) = 9.4
 Identities = 16/55 (29%), Positives = 21/55 (38%)
 Frame = -2

Query: 207 VEEKSLLQCKISDRRELPRRCWRPCHCICEMTTFQSTMREEVKGHPRMCPSRRPK 43
           +E+  LL      RR  P  CW  C C C+   F    R   K    +   R P+
Sbjct: 330 LEQSPLLPPPPPPRRRSPCHCWARCSCNCK--AFSEAARAAAKKAASLIRRRAPE 382



 Score = 23.5 bits (49), Expect(2) = 9.4
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 283 IYHLMHLVYSFL*Q 242
           +YHL+HLVY  L Q
Sbjct: 319 VYHLLHLVYLHLEQ 332