BP914031
Clone id YMU001_000039_B01
Library
Length 543
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000039_B01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
CCAAAAGGGAGGTGTCTTTGATATACTTCAGTATGTTGTTGCTGCTCTATTAGTCAGATG
TGGACATCTATTCTAATAATGTCCCAACTCTCCACATTCAGAGCATCAAACATCAAGCGT
TATGCTTCACCAACGACCATAGAGCAGAAGATAGCCCGTTTATGTCAAGGTTTAAGAGAA
CCAATCAGCTCCCGATTAGAAGCCATGAAACCTACTACTGTGCAAGATGCTTTACTACGA
GCTAAGCCCTTAACGAAGGAGTAAGGGATTAGAAGGAGAGTTGAATAAAATCAAAGTTTT
AACGATGCCAGACGACCGATAAGGCTTCCCAATAATAAAGGACAACCATAGAGAGCTTAT
GTTGCTAATGCTCAAAATCCTTCACGCTACAAACTTTGAGTAGTACTCTTCCAAGGATAA
TCTGTATTGTTTTAAGCTAAAGAACTCATTCATCTTCAACACTTCATGGGCAGGAGGTAA
GTATCTTTCTTTTACTGCTTGTTTAATCTCCCTCAACTCTGGGAGTTCTCCAATACTCCT
ATG
■■Homology search results ■■ -
sp_hit_id Q12476
Definition sp|Q12476|AIR2_YEAST Protein AIR2 OS=Saccharomyces cerevisiae
Align length 24
Score (bit) 32.3
E-value 1.5
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP914031|Adiantum capillus-veneris mRNA, clone:
YMU001_000039_B01.
(543 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q12476|AIR2_YEAST Protein AIR2 OS=Saccharomyces cerevisiae GN... 32 1.5
sp|Q4P384|YTH1_USTMA mRNA 3'-end-processing protein YTH1 OS=Usti... 31 4.4
sp|Q8DXC2|LACC_STRA5 Tagatose-6-phosphate kinase OS=Streptococcu... 30 5.8
sp|Q3JZ20|LACC_STRA1 Tagatose-6-phosphate kinase OS=Streptococcu... 30 5.8
sp|Q8E346|LACC2_STRA3 Tagatose-6-phosphate kinase 2 OS=Streptoco... 30 5.8
sp|Q9X809|COX3_STRCO Probable cytochrome c oxidase subunit 3 OS=... 30 7.6
sp|Q82AK5|COX3_STRAW Probable cytochrome c oxidase subunit 3 OS=... 30 7.6
sp|Q6LYE6|VATB_METMP V-type ATP synthase beta chain OS=Methanoco... 30 9.9
sp|A6VFZ3|VATB_METM7 V-type ATP synthase beta chain OS=Methanoco... 30 9.9
sp|A4FXD3|VATB_METM5 V-type ATP synthase beta chain OS=Methanoco... 30 9.9

>sp|Q12476|AIR2_YEAST Protein AIR2 OS=Saccharomyces cerevisiae
GN=AIR2 PE=1 SV=1
Length = 344

Score = 32.3 bits (72), Expect = 1.5
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -1

Query: 105 CSECGELGHY*NRCPHLTNRAATT 34
CS+C E+GHY ++CPH + T
Sbjct: 101 CSKCDEVGHYRSQCPHKWKKVQCT 124


>sp|Q4P384|YTH1_USTMA mRNA 3'-end-processing protein YTH1
OS=Ustilago maydis GN=YTH1 PE=3 SV=1
Length = 366

Score = 30.8 bits (68), Expect = 4.4
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1

Query: 132 W*SITLDV*CSECGELGHY*NRCPH 58
W +V C +CGE+GH+ N CP+
Sbjct: 314 WRKDLSEVLCFKCGEMGHFANMCPN 338


>sp|Q8DXC2|LACC_STRA5 Tagatose-6-phosphate kinase OS=Streptococcus
agalactiae serotype V GN=lacC PE=3 SV=1
Length = 310

Score = 30.4 bits (67), Expect = 5.8
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +1

Query: 106 SNIKRYASPTTIEQKIARLCQGLREPISSRLEAMKPTTVQD 228
S +K A PT I+ + L Q + +PIS L+ +K T QD
Sbjct: 171 SVLKSSAKPTVIKPNLEELTQLIGKPISYSLDELKSTLQQD 211


>sp|Q3JZ20|LACC_STRA1 Tagatose-6-phosphate kinase OS=Streptococcus
agalactiae serotype Ia GN=lacC PE=3 SV=1
Length = 310

Score = 30.4 bits (67), Expect = 5.8
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +1

Query: 106 SNIKRYASPTTIEQKIARLCQGLREPISSRLEAMKPTTVQD 228
S +K A PT I+ + L Q + +PIS L+ +K T QD
Sbjct: 171 SVLKSSAKPTVIKPNLEELTQLIGKPISYSLDELKSTLQQD 211


>sp|Q8E346|LACC2_STRA3 Tagatose-6-phosphate kinase 2
OS=Streptococcus agalactiae serotype III GN=lacC2 PE=3
SV=1
Length = 310

Score = 30.4 bits (67), Expect = 5.8
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +1

Query: 106 SNIKRYASPTTIEQKIARLCQGLREPISSRLEAMKPTTVQD 228
S +K A PT I+ + L Q + +PIS L+ +K T QD
Sbjct: 171 SVLKSSAKPTVIKPNLEELTQLIGKPISYSLDELKSTLQQD 211


>sp|Q9X809|COX3_STRCO Probable cytochrome c oxidase subunit 3
OS=Streptomyces coelicolor GN=ctaE PE=3 SV=1
Length = 206

Score = 30.0 bits (66), Expect = 7.6
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -3

Query: 406 VLLKVCSVKDFEH*QHKLSMVVLYYWEALSVVW 308
VL + + + F H Q ++VV YYW + VVW
Sbjct: 163 VLGRTYAARRFTHEQATAAIVVSYYWHFVDVVW 195


>sp|Q82AK5|COX3_STRAW Probable cytochrome c oxidase subunit 3
OS=Streptomyces avermitilis GN=ctaE PE=3 SV=1
Length = 206

Score = 30.0 bits (66), Expect = 7.6
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -3

Query: 406 VLLKVCSVKDFEH*QHKLSMVVLYYWEALSVVW 308
VL + + + F H Q ++VV YYW + VVW
Sbjct: 163 VLGRTYAARRFTHEQATAAIVVSYYWHFVDVVW 195


>sp|Q6LYE6|VATB_METMP V-type ATP synthase beta chain
OS=Methanococcus maripaludis GN=atpB PE=3 SV=1
Length = 462

Score = 29.6 bits (65), Expect = 9.9
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +2

Query: 257 RSKGLEGELNKIKVLTMPDDR*GFPI 334
R KG EG + +I +LTMPDD PI
Sbjct: 295 RVKGKEGTVTQIPILTMPDDDITHPI 320


>sp|A6VFZ3|VATB_METM7 V-type ATP synthase beta chain
OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331)
GN=atpB PE=3 SV=1
Length = 462

Score = 29.6 bits (65), Expect = 9.9
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +2

Query: 257 RSKGLEGELNKIKVLTMPDDR*GFPI 334
R KG EG + +I +LTMPDD PI
Sbjct: 295 RVKGREGTVTQIPILTMPDDDITHPI 320


>sp|A4FXD3|VATB_METM5 V-type ATP synthase beta chain
OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333)
GN=atpB PE=3 SV=1
Length = 462

Score = 29.6 bits (65), Expect = 9.9
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +2

Query: 257 RSKGLEGELNKIKVLTMPDDR*GFPI 334
R KG EG + +I +LTMPDD PI
Sbjct: 295 RVKGKEGTVTQIPILTMPDDDITHPI 320


tr_hit_id A5C358
Definition tr|A5C358|A5C358_VITVI Putative uncharacterized protein OS=Vitis vinifera
Align length 40
Score (bit) 36.6
E-value 0.89
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP914031|Adiantum capillus-veneris mRNA, clone:
YMU001_000039_B01.
(543 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A5C358|A5C358_VITVI Putative uncharacterized protein OS=Vitis... 37 0.89
tr|A5BWT5|A5BWT5_VITVI Putative uncharacterized protein OS=Vitis... 37 0.89
tr|A5BU14|A5BU14_VITVI Putative uncharacterized protein OS=Vitis... 37 0.89
tr|A5AVS3|A5AVS3_VITVI Putative uncharacterized protein OS=Vitis... 37 0.89
tr|A5ACJ6|A5ACJ6_VITVI Putative uncharacterized protein OS=Vitis... 37 0.89
tr|Q65352|Q65352_NPVAC ORF A span 522-1895 OS=Autographa califor... 35 2.6
tr|Q0ZLH4|Q0ZLH4_9ORYZ Polyprotein OS=Oryza australiensis PE=4 SV=1 35 2.6
tr|A5B9I7|A5B9I7_VITVI Putative uncharacterized protein OS=Vitis... 35 3.4
tr|Q7XKY8|Q7XKY8_ORYSJ OSJNBa0022F16.16 protein OS=Oryza sativa ... 34 5.8
tr|Q75H43|Q75H43_ORYSJ Putative uncharacterized protein OSJNBa00... 34 5.8
tr|Q2R1L3|Q2R1L3_ORYSJ Retrotransposon protein, putative, Ty3-gy... 34 5.8
tr|Q2R193|Q2R193_ORYSJ Retrotransposon protein, putative, Ty3-gy... 34 5.8
tr|Q2QR60|Q2QR60_ORYSJ Retrotransposon protein, putative, Ty3-gy... 34 5.8
tr|Q7XUA3|Q7XUA3_ORYSJ OSJNBa0019D11.8 protein OS=Oryza sativa s... 33 7.6
tr|Q2RB45|Q2RB45_ORYSJ Retrotransposon protein, putative, Ty3-gy... 33 7.6
tr|Q01I31|Q01I31_ORYSA OSIGBa0145G11.8 protein OS=Oryza sativa G... 33 7.6
tr|Q7XUI0|Q7XUI0_ORYSJ OSJNBa0020J04.2 protein OS=Oryza sativa s... 33 9.9
tr|Q7G774|Q7G774_ORYSJ Putative polyprotein (Retrotransposon pro... 33 9.9
tr|Q53QL2|Q53QL2_ORYSJ Retrotransposon protein, putative, Ty3-gy... 33 9.9
tr|Q53MS0|Q53MS0_ORYSJ Retrotransposon protein, putative, Ty3-gy... 33 9.9
tr|Q2QPU5|Q2QPU5_ORYSJ Retrotransposon protein, putative, Ty3-gy... 33 9.9
tr|Q10G32|Q10G32_ORYSJ Retrotransposon protein, putative, Ty3-gy... 33 9.9

>tr|A5C358|A5C358_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_001629 PE=4 SV=1
Length = 235

Score = 36.6 bits (83), Expect = 0.89
Identities = 18/40 (45%), Positives = 25/40 (62%)
Frame = -1

Query: 510 EIKQAVKERYLPPAHEVLKMNEFFSLKQYRLSLEEYYSKF 391
E+K +KE +LP +E L + FSLKQ S+EEY +F
Sbjct: 171 EMKLKMKEHFLPTDYEQLMYTKLFSLKQGTKSVEEYTEEF 210


>tr|A5BWT5|A5BWT5_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_004909 PE=4 SV=1
Length = 895

Score = 36.6 bits (83), Expect = 0.89
Identities = 18/40 (45%), Positives = 25/40 (62%)
Frame = -1

Query: 510 EIKQAVKERYLPPAHEVLKMNEFFSLKQYRLSLEEYYSKF 391
E+K +KE +LP +E L + FSLKQ S+EEY +F
Sbjct: 42 EMKLKMKEHFLPTDYEQLMYTKLFSLKQGTKSVEEYTEEF 81


>tr|A5BU14|A5BU14_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_018984 PE=4 SV=1
Length = 1521

Score = 36.6 bits (83), Expect = 0.89
Identities = 18/40 (45%), Positives = 25/40 (62%)
Frame = -1

Query: 510 EIKQAVKERYLPPAHEVLKMNEFFSLKQYRLSLEEYYSKF 391
E+K +KE +LP +E L + FSLKQ S+EEY +F
Sbjct: 161 EMKLKMKEHFLPTDYEQLMYTKLFSLKQGTKSVEEYTEEF 200


>tr|A5AVS3|A5AVS3_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_043198 PE=4 SV=1
Length = 1499

Score = 36.6 bits (83), Expect = 0.89
Identities = 18/40 (45%), Positives = 25/40 (62%)
Frame = -1

Query: 510 EIKQAVKERYLPPAHEVLKMNEFFSLKQYRLSLEEYYSKF 391
E+K +KE +LP +E L + FSLKQ S+EEY +F
Sbjct: 171 EMKLKMKEHFLPTDYEQLMYTKLFSLKQGTKSVEEYTEEF 210


>tr|A5ACJ6|A5ACJ6_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_029384 PE=4 SV=1
Length = 1392

Score = 36.6 bits (83), Expect = 0.89
Identities = 18/40 (45%), Positives = 25/40 (62%)
Frame = -1

Query: 510 EIKQAVKERYLPPAHEVLKMNEFFSLKQYRLSLEEYYSKF 391
E+K +KE +LP +E L + FSLKQ S+EEY +F
Sbjct: 171 EMKLKMKEHFLPTDYEQLMYTKLFSLKQGTKSVEEYTEEF 210


>tr|Q65352|Q65352_NPVAC ORF A span 522-1895 OS=Autographa
californica nuclear polyhedrosis virus PE=4 SV=1
Length = 410

Score = 35.0 bits (79), Expect = 2.6
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 8/43 (18%)
Frame = +1

Query: 130 PTTIEQK--------IARLCQGLREPISSRLEAMKPTTVQDAL 234
PTTIE K + +GL+EP+ SR+ M+P T++ AL
Sbjct: 137 PTTIEAKRALYKKVTVQAFVRGLKEPLGSRIRCMRPETIEKAL 179


>tr|Q0ZLH4|Q0ZLH4_9ORYZ Polyprotein OS=Oryza australiensis PE=4 SV=1
Length = 1469

Score = 35.0 bits (79), Expect = 2.6
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = -1

Query: 522 PELREIKQAVKERYLPPAHEVLKMNEFFSLKQYRLSLEEYYSKF 391
P E A +E ++P A +K NEF L+Q S++EY +KF
Sbjct: 119 PTWEEFTAAFRENFVPAAVMRMKKNEFRRLRQGNTSVQEYLNKF 162


>tr|A5B9I7|A5B9I7_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_012932 PE=4 SV=1
Length = 1027

Score = 34.7 bits (78), Expect = 3.4
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = -1

Query: 507 IKQAVKERYLPPAHEVLKMNEFFSLKQYRLSLEEYYSKF 391
+K +KE +LP +E L + FSLKQ S+EEY +F
Sbjct: 1 MKLKMKEHFLPSHYEQLMYTKLFSLKQGTKSVEEYTEEF 39


>tr|Q7XKY8|Q7XKY8_ORYSJ OSJNBa0022F16.16 protein OS=Oryza sativa
subsp. japonica GN=OSJNBa0022F16.16 PE=4 SV=1
Length = 1402

Score = 33.9 bits (76), Expect = 5.8
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -1

Query: 105 CSECGELGHY*NRCPHLTNRAATT 34
C CGE GH+ N+CPHL T
Sbjct: 226 CFNCGEYGHFANKCPHLNKTPIRT 249


>tr|Q75H43|Q75H43_ORYSJ Putative uncharacterized protein
OSJNBa0006O14.10 (Putative uncharacterized protein
OSJNBa0010H19.3) OS=Oryza sativa subsp. japonica
GN=OSJNBa0006O14.10 PE=4 SV=1
Length = 214

Score = 33.9 bits (76), Expect = 5.8
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = -1

Query: 114 DV*CSECGELGHY*NRCPHLTNRAATTY*SISKTP 10
D+ C C E+GH+ ++CP N AA+T S+ TP
Sbjct: 47 DICCFSCQEMGHFADKCPKPRNMAAST--SVHATP 79