NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914038
Clone id YMU001_000039_B10
Library
Length 583
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000039_B10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GCAGGTTGTAGTTGATCCTTCATCTTTAATGCCTCGTAGATAACCCTTGTTATGATCTCA
CCTCCTCCAATGTACAGTGGTGAGATATTCCTGAGCTTGATAAGAGAAACCAATACATGT
GCAGCATGGTTTATCACTACCAACCCTGGACTCTGCAATGCCCATGTTAAGGTAGTGGCC
ATAGATGCCATGGGGTTGGTATACCTTGGTGGTCTCTTGCTTATGCACAAAACACACTGA
TTATATATTCTGCAAAGAATTTTTGCTGTTTGGTTCTGCATATCTTCAAATACTTGTGTC
GTTTGCTTGTTGCTGAATACCACCAGCTTATGGTGTCTCTCTCTGACACTGGATCCCTCC
CTAGACAAATGGCAGGCGGCATGGATGATGTCGGTTGTGATTTTAATTTGTACTTTATTG
CCATATCGTCCTGTGACCATGCATGTTCCATCATCTTGGATTGATTCTACTAACTCATGG
ACTCTCTGAATGTCTATGCTGATAGGGGGGAAGAGTCAAGAACTTCAACAAACCCGCTGT
CTTCATTGGCCCCTTCAGGCTCTCATTCTTCAGATGGGTCATT
■■Homology search results ■■ -
sp_hit_id Q8YTZ6
Definition sp|Q8YTZ6|PHK2_ANASP Probable phosphoketolase 2 OS=Anabaena sp. (strain PCC 7120)
Align length 66
Score (bit) 34.3
E-value 0.47
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914038|Adiantum capillus-veneris mRNA, clone:
YMU001_000039_B10.
         (583 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8YTZ6|PHK2_ANASP Probable phosphoketolase 2 OS=Anabaena sp. ...    34   0.47 
sp|Q7NLX2|PHK_GLOVI Probable phosphoketolase OS=Gloeobacter viol...    34   0.61 
sp|Q01172|PLYA_ASPNG Pectin lyase A OS=Aspergillus niger GN=pelA...    33   1.3  
sp|Q988V7|PHK_RHILO Probable phosphoketolase OS=Rhizobium loti G...    32   1.8  
sp|Q00374|PLYA_COLGL Pectin lyase OS=Colletotrichum gloeosporioi...    32   3.0  
sp|Q00205|PLYB_ASPNG Pectin lyase B OS=Aspergillus niger GN=pelB...    31   3.9  
sp|P01132|EGF_MOUSE Pro-epidermal growth factor OS=Mus musculus ...    31   3.9  
sp|Q8KCA0|PHK_CHLTE Probable phosphoketolase OS=Chlorobium tepid...    31   3.9  
sp|Q92T74|PHK1_RHIME Probable phosphoketolase 1 OS=Rhizobium mel...    31   3.9  
sp|Q5L025|IOLA1_GEOKA Methylmalonate semialdehyde dehydrogenase ...    31   5.1  
sp|Q6MFC0|PHK_PARUW Probable phosphoketolase OS=Protochlamydia a...    31   5.2  
sp|Q6N976|PHK_RHOPA Probable phosphoketolase OS=Rhodopseudomonas...    30   6.7  
sp|P31833|COX1_BRAJA Cytochrome c oxidase subunit 1 OS=Bradyrhiz...    30   8.7  

>sp|Q8YTZ6|PHK2_ANASP Probable phosphoketolase 2 OS=Anabaena sp.
           (strain PCC 7120) GN=all2567 PE=3 SV=1
          Length = 793

 Score = 34.3 bits (77), Expect = 0.47
 Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
 Frame = -2

Query: 198 QPHGIYGHYLNMGIAESRVGSDKPCCTCIGFSYQAQEYLT-TVHWRR*DHNKGYLRGIKD 22
           QP   + H LN    E+   +DKP    I F++    +L   + +R+ +HN  ++RG K+
Sbjct: 667 QPKTEHPHGLNPKDFETIFTTDKP----IIFAFHGYPWLIHRLTYRQPNHNNLHVRGYKE 722

Query: 21  EGSTTT 4
           EG+TTT
Sbjct: 723 EGTTTT 728


>sp|Q7NLX2|PHK_GLOVI Probable phosphoketolase OS=Gloeobacter
           violaceus GN=glr0997 PE=3 SV=1
          Length = 793

 Score = 33.9 bits (76), Expect = 0.61
 Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
 Frame = -2

Query: 198 QPHGIYGHYLNMGIAESRVGSDKPCCTCIGFSYQAQEYLT-TVHWRR*DHNKGYLRGIKD 22
           QP   + H L+    +S    DKP    + F++    +L   + +RR +HN  ++RG K+
Sbjct: 667 QPESEHPHGLSDKDFDSIFTPDKP----VVFAFHGYPWLIHRLTYRRNNHNNIHVRGYKE 722

Query: 21  EGSTTT 4
           EG+TTT
Sbjct: 723 EGTTTT 728


>sp|Q01172|PLYA_ASPNG Pectin lyase A OS=Aspergillus niger GN=pelA
           PE=1 SV=1
          Length = 379

 Score = 32.7 bits (73), Expect = 1.3
 Identities = 19/80 (23%), Positives = 41/80 (51%)
 Frame = -3

Query: 287 EDMQNQTAKILCRIYNQCVLCISKRPPRYTNPMASMATTLTWALQSPGLVVINHAAHVLV 108
           E+ +     +    YN  VL I+      T+  + +    + A++  GL +++ A ++++
Sbjct: 103 ENYEPDAPSVSVEYYNAGVLGIT-----VTSNKSLIGEGSSGAIKGKGLRIVSGAENIII 157

Query: 107 SLIKLRNISPLYIGGGEIIT 48
             I + +I+P Y+ GG+ IT
Sbjct: 158 QNIAVTDINPKYVWGGDAIT 177


>sp|Q988V7|PHK_RHILO Probable phosphoketolase OS=Rhizobium loti
           GN=mlr6575 PE=3 SV=1
          Length = 807

 Score = 32.3 bits (72), Expect = 1.8
 Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
 Frame = -2

Query: 207 KVYQPHGIYGHYLNMGIAESRVGSDKPCCTCIGFSYQAQEYLTTVH---WRR*DHNKGYL 37
           K Y PHG+          ++    DKP    + F+Y    Y  T+H   +RR +H+  ++
Sbjct: 673 KEYHPHGLSDREF-----DALFTPDKP----VIFAYHG--YPWTIHRLTYRRTNHDNIHV 721

Query: 36  RGIKDEGSTTT 4
           RG  +EG+TTT
Sbjct: 722 RGYNEEGTTTT 732


>sp|Q00374|PLYA_COLGL Pectin lyase OS=Colletotrichum gloeosporioides
           GN=PNLA PE=3 SV=1
          Length = 380

 Score = 31.6 bits (70), Expect = 3.0
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = -3

Query: 158 LQSPGLVVINHAAHVLVSLIKLRNISPLYIGGGEIIT 48
           ++  GL + N A +V++  I + N++P Y+ GG+ I+
Sbjct: 142 IKGKGLRITNSAKNVIIQNIHITNLNPKYVWGGDAIS 178


>sp|Q00205|PLYB_ASPNG Pectin lyase B OS=Aspergillus niger GN=pelB
           PE=1 SV=1
          Length = 378

 Score = 31.2 bits (69), Expect = 3.9
 Identities = 13/37 (35%), Positives = 25/37 (67%)
 Frame = -3

Query: 158 LQSPGLVVINHAAHVLVSLIKLRNISPLYIGGGEIIT 48
           ++  GL V++ A +V++  I + +I+P Y+ GG+ IT
Sbjct: 140 IKGKGLRVVSGAKNVIIQNIAVTDINPKYVWGGDAIT 176


>sp|P01132|EGF_MOUSE Pro-epidermal growth factor OS=Mus musculus
            GN=Egf PE=1 SV=1
          Length = 1217

 Score = 31.2 bits (69), Expect = 3.9
 Identities = 29/122 (23%), Positives = 49/122 (40%), Gaps = 4/122 (3%)
 Frame = +3

Query: 108  NQYMCSMVYHYQPWTLQCPC*GSGHRCHGVGIPWWSL---AYAQNTLIIYSAKNFCCLVL 278
            N  +C  +     +T  C    SG RC    + WW L    Y Q   I+  A    C+V 
Sbjct: 992  NGGVCMHIESLDSYTCNCVIGYSGDRCQTRDLRWWELRHAGYGQKHDIMVVA---VCMVA 1048

Query: 279  HIFKYLCRLLVAEYHQLMVSLSDTGSLP-RQMAGGMDDVGCDFNLYFIAISSCDHACSII 455
             +   L  +    Y++    LS+    P  + +G +   G D +    A++SC     ++
Sbjct: 1049 LVLLLLLGMWGTYYYRTRKQLSNPPKNPCDEPSGSVSSSGPD-SSSGAAVASCPQPWFVV 1107

Query: 456  LD 461
            L+
Sbjct: 1108 LE 1109


>sp|Q8KCA0|PHK_CHLTE Probable phosphoketolase OS=Chlorobium tepidum
           GN=CT1524 PE=3 SV=2
          Length = 791

 Score = 31.2 bits (69), Expect = 3.9
 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
 Frame = -2

Query: 198 QPHGIYGHYLNMGIAESRVGSDKPCCTCIGFSYQAQEYLT-TVHWRR*DHNKGYLRGIKD 22
           QP   + H L     +    +DKP    I F+Y    +L   + +RR +H+  ++RG K+
Sbjct: 665 QPKEEHPHGLADRDFDDMFTTDKP----IIFAYHGYPWLIHRLTYRRTNHHNLHVRGYKE 720

Query: 21  EGSTTT 4
           EG+TTT
Sbjct: 721 EGTTTT 726


>sp|Q92T74|PHK1_RHIME Probable phosphoketolase 1 OS=Rhizobium
           meliloti GN=R00106 PE=3 SV=1
          Length = 789

 Score = 31.2 bits (69), Expect = 3.9
 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
 Frame = -2

Query: 198 QPHGIYGHYLNMGIAESRVGSDKPCCTCIGFSYQAQEYLT-TVHWRR*DHNKGYLRGIKD 22
           QP G + H L     ++    DKP    I F++    +L   + +RR +H   ++RG K+
Sbjct: 647 QPSGEHPHGLPDRDFDALFTKDKP----IIFAFHGYPWLIHRLTYRRTNHANLHVRGYKE 702

Query: 21  EGSTTT 4
           EG+TTT
Sbjct: 703 EGTTTT 708


>sp|Q5L025|IOLA1_GEOKA Methylmalonate semialdehyde dehydrogenase
           [acylating] 1 OS=Geobacillus kaustophilus GN=iolA1 PE=3
           SV=1
          Length = 488

 Score = 30.8 bits (68), Expect = 5.1
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
 Frame = -3

Query: 242 NQCVLCISKRPPRYTNPMASMATTLTWALQSPGLVVINHAAHVLV-SLIKLRNISPLYIG 66
           N  VL  S+R P   N +A + T    A   PG++ + H AH +V +LI   +I  +   
Sbjct: 175 NTFVLKPSERTPILANKLAELFTE---AGAPPGVLNVVHGAHEVVNALIDHEDIRAISFV 231

Query: 65  GGEIITRVIYE 33
           G + + + +YE
Sbjct: 232 GSQPVAKYVYE 242
tr_hit_id A6SIR2
Definition tr|A6SIR2|A6SIR2_BOTFB Putative uncharacterized protein OS=Botryotinia fuckeliana (strain B05.10)
Align length 40
Score (bit) 35.4
E-value 2.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914038|Adiantum capillus-veneris mRNA, clone:
YMU001_000039_B10.
         (583 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A6SIR2|A6SIR2_BOTFB Putative uncharacterized protein OS=Botry...    35   2.3  
tr|Q9KYV5|Q9KYV5_STRCO Putative mechanosensitive channel OS=Stre...    35   3.0  
tr|A4LLX6|A4LLX6_BURPS Flagellar biosynthetic protein FliR OS=Bu...    35   3.1  
tr|A3FIJ9|A3FIJ9_BURPS FliR OS=Burkholderia pseudomallei GN=btfc...    35   3.1  
tr|Q84BW4|Q84BW4_BARQU VirB10 OS=Bartonella quintana GN=virB10 P...    34   5.2  
tr|Q3MFW6|Q3MFW6_ANAVT D-xylulose 5-phosphate/D-fructose 6-phosp...    34   5.2  
tr|A3NFU9|A3NFU9_BURP6 Flagellar biosynthesis pathway, component...    34   5.2  
tr|B2H657|B2H657_BURPS Flagellar biosynthetic protein FliR OS=Bu...    34   5.2  
tr|A8EJL8|A8EJL8_BURPS Flagellar biosynthetic protein FliR OS=Bu...    34   5.2  
tr|A7EXK6|A7EXK6_SCLS1 Putative uncharacterized protein OS=Scler...    34   6.8  
tr|Q2T8Y2|Q2T8Y2_BURTA Flagellar biosynthetic protein FliR, puta...    34   6.9  
tr|Q2BXV9|Q2BXV9_9GAMM Putative uncharacterized protein OS=Photo...    34   6.9  
tr|Q1ZRY8|Q1ZRY8_9VIBR Putative uncharacterized protein OS=Vibri...    34   6.9  
tr|A9UZV7|A9UZV7_MONBE Predicted protein OS=Monosiga brevicollis...    33   9.0  

>tr|A6SIR2|A6SIR2_BOTFB Putative uncharacterized protein
           OS=Botryotinia fuckeliana (strain B05.10) GN=BC1G_12517
           PE=4 SV=1
          Length = 384

 Score = 35.4 bits (80), Expect = 2.3
 Identities = 14/40 (35%), Positives = 27/40 (67%)
 Frame = -3

Query: 167 TWALQSPGLVVINHAAHVLVSLIKLRNISPLYIGGGEIIT 48
           T  +Q  GL +++ A+++++  IK+  I+P Y+ GG+ IT
Sbjct: 140 TGIIQGKGLRMVSGASNIIIQNIKIEEINPKYVWGGDAIT 179


>tr|Q9KYV5|Q9KYV5_STRCO Putative mechanosensitive channel
           OS=Streptomyces coelicolor GN=SCO3190 PE=4 SV=1
          Length = 156

 Score = 35.0 bits (79), Expect = 3.0
 Identities = 20/50 (40%), Positives = 28/50 (56%)
 Frame = +3

Query: 153 LQCPC*GSGHRCHGVGIPWWSLAYAQNTLIIYSAKNFCCLVLHIFKYLCR 302
           L+ PC G+G    GV I W S+  A  T +I +A  +  +VL + KYL R
Sbjct: 66  LKGPCTGTGDSATGVRILWGSVLGATLTFLITAAVVYFLMVLPMSKYLAR 115


>tr|A4LLX6|A4LLX6_BURPS Flagellar biosynthetic protein FliR
           OS=Burkholderia pseudomallei 305 GN=BURPS305_3653 PE=3
           SV=1
          Length = 258

 Score = 35.0 bits (79), Expect = 3.1
 Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
 Frame = +1

Query: 244 YILQRIFAVWFCISSNTCVVCLLLNTTSLWCLSLTLD-PSLDK--WQAAWMMSVVILICT 414
           ++L     ++F I ++  VV +L  +  +W +   +D PSL    +QAAW+ S  +L+  
Sbjct: 127 FMLVASILLFFAIDAHLVVVQVLYTSFRVWPVGTPIDLPSLKPLAYQAAWLFSTTMLLAA 186

Query: 415 LLPYRPVTMHVPSSWI 462
            L +  V + +  S++
Sbjct: 187 PLVFATVVLQIGKSYL 202


>tr|A3FIJ9|A3FIJ9_BURPS FliR OS=Burkholderia pseudomallei
           GN=btfc-orf22 PE=3 SV=1
          Length = 258

 Score = 35.0 bits (79), Expect = 3.1
 Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
 Frame = +1

Query: 244 YILQRIFAVWFCISSNTCVVCLLLNTTSLWCLSLTLD-PSLDK--WQAAWMMSVVILICT 414
           ++L     ++F I ++  VV +L  +  +W +   +D PSL    +QAAW+ S  +L+  
Sbjct: 127 FMLVASILLFFAIDAHLVVVQVLYTSFRVWPVGTPIDLPSLKPLAYQAAWLFSTTMLLAA 186

Query: 415 LLPYRPVTMHVPSSWI 462
            L +  V + +  S++
Sbjct: 187 PLVFATVVLQIGKSYL 202


>tr|Q84BW4|Q84BW4_BARQU VirB10 OS=Bartonella quintana GN=virB10 PE=4
           SV=1
          Length = 446

 Score = 34.3 bits (77), Expect = 5.2
 Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
 Frame = -3

Query: 473 LVESIQDDGTCMV--TGRYGNKVQIKITTDIIHAACHLSREGSSVRERHHKLVVFSNKQT 300
           L+E+ Q + +C+   + +    +Q KITT       H +    ++ ++H+ L++FSN+QT
Sbjct: 116 LLEAAQTECSCLAYASPQKSQAMQKKITT------LHRTNSKENLMKQHNALIIFSNRQT 169

Query: 299 TQVF 288
            +VF
Sbjct: 170 LKVF 173


>tr|Q3MFW6|Q3MFW6_ANAVT D-xylulose 5-phosphate/D-fructose
           6-phosphate phosphoketolase OS=Anabaena variabilis
           (strain ATCC 29413 / PCC 7937) GN=Ava_0496 PE=4 SV=1
          Length = 793

 Score = 34.3 bits (77), Expect = 5.2
 Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
 Frame = -2

Query: 198 QPHGIYGHYLNMGIAESRVGSDKPCCTCIGFSYQAQEYLT-TVHWRR*DHNKGYLRGIKD 22
           QP   + H LN    E+   +DKP    I F++    +L   + +R+ +HN  ++RG K+
Sbjct: 667 QPKTEHPHGLNPKDFETIFTTDKP----IIFAFHGYPWLIHRLTYRQPNHNNLHVRGYKE 722

Query: 21  EGSTTT 4
           EG+TTT
Sbjct: 723 EGTTTT 728


>tr|A3NFU9|A3NFU9_BURP6 Flagellar biosynthesis pathway, component
           FliR OS=Burkholderia pseudomallei (strain 668)
           GN=BURPS668_A0214 PE=3 SV=1
          Length = 258

 Score = 34.3 bits (77), Expect = 5.2
 Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
 Frame = +1

Query: 244 YILQRIFAVWFCISSNTCVVCLLLNTTSLWCLSLTLD-PSLDK--WQAAWMMSVVILICT 414
           ++L     ++F I ++  VV +L  +  +W +   +D PSL    +QAAW+ S   L+  
Sbjct: 127 FMLVASILLFFAIDAHLVVVQVLYTSFRVWPVGTPIDLPSLKPLAYQAAWLFSTTTLLAA 186

Query: 415 LLPYRPVTMHVPSSWI 462
            L +  V + +  S++
Sbjct: 187 PLVFATVVLQIGKSYL 202


>tr|B2H657|B2H657_BURPS Flagellar biosynthetic protein FliR
           OS=Burkholderia pseudomallei 1655 GN=BURPS1655_C0609
           PE=4 SV=1
          Length = 258

 Score = 34.3 bits (77), Expect = 5.2
 Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
 Frame = +1

Query: 244 YILQRIFAVWFCISSNTCVVCLLLNTTSLWCLSLTLD-PSLDK--WQAAWMMSVVILICT 414
           ++L     ++F I ++  VV +L  +  +W +   +D PSL    +QAAW+ S   L+  
Sbjct: 127 FMLVASILLFFAIDAHLVVVQVLYTSFRVWPVGTPIDLPSLKPLAYQAAWLFSTTTLLAA 186

Query: 415 LLPYRPVTMHVPSSWI 462
            L +  V + +  S++
Sbjct: 187 PLVFATVVLQIGKSYL 202


>tr|A8EJL8|A8EJL8_BURPS Flagellar biosynthetic protein FliR
           OS=Burkholderia pseudomallei 406e GN=BURPS406E_P0359
           PE=3 SV=1
          Length = 258

 Score = 34.3 bits (77), Expect = 5.2
 Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
 Frame = +1

Query: 244 YILQRIFAVWFCISSNTCVVCLLLNTTSLWCLSLTLD-PSLDK--WQAAWMMSVVILICT 414
           ++L     ++F I ++  VV +L  +  +W +   +D PSL    +QAAW+ S   L+  
Sbjct: 127 FMLVASILLFFAIDAHLVVVQVLYTSFRVWPVGTPIDLPSLKPLAYQAAWLFSTTALLAA 186

Query: 415 LLPYRPVTMHVPSSWI 462
            L +  V + +  S++
Sbjct: 187 PLVFATVVLQIGKSYL 202


>tr|A7EXK6|A7EXK6_SCLS1 Putative uncharacterized protein
           OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 /
           Ss-1) GN=SS1G_10071 PE=4 SV=1
          Length = 381

 Score = 33.9 bits (76), Expect = 6.8
 Identities = 12/37 (32%), Positives = 26/37 (70%)
 Frame = -3

Query: 158 LQSPGLVVINHAAHVLVSLIKLRNISPLYIGGGEIIT 48
           +Q  GL +++ A+++++  IK+  ++P Y+ GG+ IT
Sbjct: 142 IQGKGLRMVSGASNIIIQNIKIEELNPKYVWGGDAIT 178