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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914043
Clone id YMU001_000039_C03
Library
Length 554
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000039_C03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ATGAAGAAGCTGCCCTGGCTATTCAAGCAGCAGATGGACTGATCATATGCGAAAAGCGTG
TTAAGTGTGATTGGGGAACGAAGCCAAACTCACTTTTGGGATTTTCAAATCGGCTTCCCT
TAGAGTCACCAGAGCCAGGTACACTTTTGGGACTGTCAAATACTCCTTCCCCACCTCCAG
CAGGTCAATCACCAGAGTCTTTTGCTACTACATCAGTGGAACCCACTGAAGAGCTGACAT
TTACCGAAGGATAGGCTCTTTCTTGGTGACTAAGCAACAATGGAGCAATTCGGTTGATAT
CGAATTTGGGGCGAACGGCCGAAGGAGGAATCCTCTTCTTGCCTATAGGTTCTTATGGTC
TTCTAGACTTTAATGAACTAACTTTTTGGAGTCGTAGCTCCTCTTAGTCTGAGAACAGTT
TCTGCACATCGTGGATTTGTGGCGAACTCGCGGAAGAGCATCAGCAGAATGGATCTTTAG
AAAAAGACCCCTCTCATAAGGAAAGCAGGCTGCCTCAGCTGCTAAGACAAAAGAGTCTAT
GCACATGACATGGA
■■Homology search results ■■ -
sp_hit_id Q8K4J6
Definition sp|Q8K4J6|MKL1_MOUSE MKL/myocardin-like protein 1 OS=Mus musculus
Align length 40
Score (bit) 32.7
E-value 1.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914043|Adiantum capillus-veneris mRNA, clone:
YMU001_000039_C03.
         (554 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8K4J6|MKL1_MOUSE MKL/myocardin-like protein 1 OS=Mus musculu...    33   1.2  
sp|P27093|INHBB_CHICK Inhibin beta B chain OS=Gallus gallus GN=I...    33   1.2  
sp|Q4ZQV7|CHEB3_PSEU2 Chemotaxis response regulator protein-glut...    32   1.6  
sp|Q9NW68|BSDC1_HUMAN BSD domain-containing protein 1 OS=Homo sa...    32   2.1  
sp|Q59TN9|ATG20_CANAL Autophagy-related protein 20 OS=Candida al...    32   2.1  
sp|Q5L720|RL3_CHLAB 50S ribosomal protein L3 OS=Chlamydophila ab...    32   2.7  
sp|P57796|CABP4_HUMAN Calcium-binding protein 4 OS=Homo sapiens ...    31   3.5  
sp|Q6ZRS2|SRCAP_HUMAN Helicase SRCAP OS=Homo sapiens GN=SRCAP PE...    31   4.6  
sp|Q81487|POLG_HCVTR Genome polyprotein OS=Hepatitis C virus gen...    30   6.0  
sp|Q7XUR2|LDL3_ORYSJ Lysine-specific histone demethylase 1 homol...    30   6.0  
sp|Q01H90|LDL3_ORYSI Lysine-specific histone demethylase 1 homol...    30   6.0  
sp|Q5SSE9|ABCAD_MOUSE ATP-binding cassette sub-family A member 1...    30   6.0  
sp|Q8BX57|PXK_MOUSE PX domain-containing protein kinase-like pro...    30   7.9  
sp|P03869|IPT_AGRT4 Isopentenyl transferase OS=Agrobacterium tum...    30   7.9  
sp|P18302|DREB_CHICK Drebrin OS=Gallus gallus GN=DBN1 PE=2 SV=4        30   7.9  

>sp|Q8K4J6|MKL1_MOUSE MKL/myocardin-like protein 1 OS=Mus musculus
           GN=Mkl1 PE=1 SV=2
          Length = 964

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 17/40 (42%), Positives = 24/40 (60%)
 Frame = +3

Query: 108 NRLPLESPEPGTLLGLSNTPSPPPAGQSPESFATTSVEPT 227
           ++LP+ +P+PG  L L+  P  PPA   P S A  S+ PT
Sbjct: 197 SQLPM-APDPGETLFLAEQPPLPPAPLLPPSLANGSIVPT 235


>sp|P27093|INHBB_CHICK Inhibin beta B chain OS=Gallus gallus
           GN=INHBB PE=2 SV=2
          Length = 391

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +3

Query: 144 LLGLSNTPSPPPAGQSPESFATT 212
           LLG + TP+PPPAG SP+   T+
Sbjct: 20  LLGAAATPTPPPAGSSPQDTCTS 42


>sp|Q4ZQV7|CHEB3_PSEU2 Chemotaxis response regulator
           protein-glutamate methylesterase 3 OS=Pseudomonas
           syringae pv. syringae (strain B728a) GN=cheB3 PE=3 SV=1
          Length = 386

 Score = 32.3 bits (72), Expect = 1.6
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = +3

Query: 42  IICEKRVKCDWGTKPNSLLGFSNRLPLESPEPGTLLGLSNTPSPPPAGQSPESFATTSVE 221
           ++CEK        + +S  G ++  P  +P P TL   ++ P+P PA   P   AT +  
Sbjct: 121 LLCEKINSISRSNRRSSGFGSASAAPA-APAPSTLSSRASAPAPAPARAVPSRTATPAAA 179

Query: 222 P 224
           P
Sbjct: 180 P 180


>sp|Q9NW68|BSDC1_HUMAN BSD domain-containing protein 1 OS=Homo
           sapiens GN=BSDC1 PE=2 SV=1
          Length = 430

 Score = 32.0 bits (71), Expect = 2.1
 Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +3

Query: 72  WGTKPNSLLGFSNRLPLESPEPGTLLGLSNTPSPPPAGQSP-ESFATTSVEPTEELTFTE 248
           W  +   L+G S   P E+  P  +  +S  P   P  QSP E    TSVEP  E+T +E
Sbjct: 221 WEEEEEELMGISPISPKEAKVP--VAKISTFPEGEPGPQSPCEENLVTSVEPPAEVTPSE 278


>sp|Q59TN9|ATG20_CANAL Autophagy-related protein 20 OS=Candida
           albicans GN=ATG20 PE=3 SV=1
          Length = 407

 Score = 32.0 bits (71), Expect = 2.1
 Identities = 27/92 (29%), Positives = 44/92 (47%)
 Frame = -2

Query: 331 IPPSAVRPKFDINRIAPLLLSHQERAYPSVNVSSSVGSTDVVAKDSGD*PAGGGEGVFDS 152
           IPP   +  FD + +  L+ S+ E +  S++V+ S G       +SG    GG  G    
Sbjct: 225 IPPIPPKNYFDFSMLNGLVGSNHENS--SLSVAGSNG-------NSGGSGGGGASG---- 271

Query: 151 PKSVPGSGDSKGSRFENPKSEFGFVPQSHLTR 56
                GSG   GS   +PK+ + ++  +HLT+
Sbjct: 272 ---GAGSGSGNGSIITSPKT-YSYINSTHLTK 299


>sp|Q5L720|RL3_CHLAB 50S ribosomal protein L3 OS=Chlamydophila
           abortus GN=rplC PE=3 SV=1
          Length = 221

 Score = 31.6 bits (70), Expect = 2.7
 Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -2

Query: 172 GEGVFDSPKSVPGSGDSKGSRFENPKSEFGF--VPQSHLTRF 53
           G  VF+S  S+  SG SKG  F+     FGF   PQSH + F
Sbjct: 108 GLEVFESVSSIDVSGVSKGKGFQGVMKRFGFRGGPQSHGSGF 149


>sp|P57796|CABP4_HUMAN Calcium-binding protein 4 OS=Homo sapiens
           GN=CABP4 PE=1 SV=2
          Length = 275

 Score = 31.2 bits (69), Expect = 3.5
 Identities = 28/89 (31%), Positives = 36/89 (40%), Gaps = 4/89 (4%)
 Frame = -2

Query: 346 IGKKRIPPSAVRPKFDINRIAPLLL--SHQERAYPSVN--VSSSVGSTDVVAKDSGD*PA 179
           IG+++ P   V PK D     PL    S +ER          SS   T   A  S + P 
Sbjct: 16  IGRQKPPAGVVTPKSDAEE-PPLTRKRSKKERGLRGSRKRTGSSGEQTGPEAPGSSNNPP 74

Query: 178 GGGEGVFDSPKSVPGSGDSKGSRFENPKS 92
             GEG   +P + PG   S+ S    P S
Sbjct: 75  STGEGPAGAPPASPGPASSRQSHRHRPDS 103


>sp|Q6ZRS2|SRCAP_HUMAN Helicase SRCAP OS=Homo sapiens GN=SRCAP PE=1
            SV=2
          Length = 3230

 Score = 30.8 bits (68), Expect = 4.6
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 114  LPLESPEPGTLLGLSNTPSPPPAGQSPESFATTSVEP 224
            +P+ +P P T+L +   PSPPP  Q P   +     P
Sbjct: 2466 VPISAPNPITILPVHILPSPPPPSQIPPCSSPACTPP 2502


>sp|Q81487|POLG_HCVTR Genome polyprotein OS=Hepatitis C virus genotype
            3b (isolate Tr-Kj) PE=3 SV=3
          Length = 3023

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
 Frame = -2

Query: 328  PPSAVRP-KFDINRIAPLLLSHQERAYPSVN-----VSSSVGSTDVVAKDSGD*PAGGGE 167
            PP   R  K D + ++  LL+  ER++PS        SSS   T+  A +SGD P  G E
Sbjct: 2334 PPRRKRTIKLDGSNVSAALLALAERSFPSTKPEGTGTSSSGVGTESTA-ESGDSPETGEE 2392

Query: 166  GVFDSPKSVP 137
               +S  S+P
Sbjct: 2393 SDVESYSSMP 2402


>sp|Q7XUR2|LDL3_ORYSJ Lysine-specific histone demethylase 1 homolog
           3 OS=Oryza sativa subsp. japonica GN=Os04g0560300 PE=2
           SV=2
          Length = 811

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +3

Query: 99  GFSNRLPLESPEPGTLLGLSNTPSPPPAGQSPESFATTSVEPTEE 233
           GF  +LP  SP     +  S +  PPP   + +     + EPT E
Sbjct: 50  GFRRKLPSGSPAAPVAVAASPSAQPPPRASAADDIIVINREPTAE 94
tr_hit_id A9SJ44
Definition tr|A9SJ44|A9SJ44_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens
Align length 64
Score (bit) 52.4
E-value 2.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914043|Adiantum capillus-veneris mRNA, clone:
YMU001_000039_C03.
         (554 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SJ44|A9SJ44_PHYPA Predicted protein (Fragment) OS=Physcomit...    52   2e-05
tr|Q9XEZ5|Q9XEZ5_LARLA Putative RNA-binding protein (Fragment) O...    50   8e-05
tr|O65051|O65051_PICMA Putative RNA-binding protein (Fragment) O...    50   8e-05
tr|B8LQR6|B8LQR6_PICSI Putative uncharacterized protein OS=Picea...    50   8e-05
tr|A7P528|A7P528_VITVI Chromosome chr4 scaffold_6, whole genome ...    47   5e-04
tr|A5AXH5|A5AXH5_VITVI Putative uncharacterized protein OS=Vitis...    47   5e-04
tr|A7PDT2|A7PDT2_VITVI Chromosome chr11 scaffold_13, whole genom...    46   0.001
tr|B6T6H4|B6T6H4_MAIZE mRNA 3-UTR binding protein OS=Zea mays PE...    44   0.004
tr|B4FRG6|B4FRG6_MAIZE Putative uncharacterized protein OS=Zea m...    44   0.004
tr|Q6YZW2|Q6YZW2_ORYSJ Os08g0520300 protein OS=Oryza sativa subs...    44   0.006
tr|B8B8U1|B8B8U1_ORYSI Putative uncharacterized protein OS=Oryza...    44   0.006
tr|A3BUX3|A3BUX3_ORYSJ Putative uncharacterized protein OS=Oryza...    44   0.006
tr|Q9XF32|Q9XF32_ORYSI Putative nucleolysin OS=Oryza sativa subs...    43   0.010
tr|Q9XEV3|Q9XEV3_ORYSA TIA-1 related protein OS=Oryza sativa PE=...    43   0.010
tr|Q2R134|Q2R134_ORYSJ Os11g0620100 protein OS=Oryza sativa subs...    43   0.010
tr|B8BLL8|B8BLL8_ORYSI Putative uncharacterized protein OS=Oryza...    43   0.010
tr|A3CDG6|A3CDG6_ORYSJ Putative uncharacterized protein OS=Oryza...    43   0.010
tr|B6TKK8|B6TKK8_MAIZE Nucleolysin TIAR OS=Zea mays PE=2 SV=1          42   0.022
tr|Q8H393|Q8H393_ORYSJ Os07g0615400 protein OS=Oryza sativa subs...    42   0.029
tr|B8B8K2|B8B8K2_ORYSI Putative uncharacterized protein OS=Oryza...    42   0.029
tr|A3BM66|A3BM66_ORYSJ Putative uncharacterized protein OS=Oryza...    42   0.029
tr|A9SJ45|A9SJ45_PHYPA Predicted protein (Fragment) OS=Physcomit...    41   0.049
tr|B6T3L2|B6T3L2_MAIZE mRNA 3-UTR binding protein OS=Zea mays PE...    40   0.064
tr|A7P6F6|A7P6F6_VITVI Chromosome chr9 scaffold_7, whole genome ...    40   0.064
tr|A5AXF7|A5AXF7_VITVI Putative uncharacterized protein OS=Vitis...    40   0.064
tr|Q9M427|Q9M427_NICPL Oligouridylate binding protein OS=Nicotia...    39   0.14 
tr|B7FLK8|B7FLK8_MEDTR Putative uncharacterized protein OS=Medic...    39   0.19 
tr|Q2XPV3|Q2XPV3_SOLTU Oligouridylate binding protein-like prote...    37   0.54 
tr|Q1JQ13|Q1JQ13_DANRE Zgc:158534 OS=Danio rerio GN=zgc:158534 P...    35   2.0  
tr|Q9LJH8|Q9LJH8_ARATH RNA binding protein nucleolysin; oligouri...    35   2.0  

>tr|A9SJ44|A9SJ44_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_13586 PE=4 SV=1
          Length = 397

 Score = 52.4 bits (124), Expect = 2e-05
 Identities = 28/64 (43%), Positives = 35/64 (54%)
 Frame = +3

Query: 3   EEAALAIQAADGLIICEKRVKCDWGTKPNSLLGFSNRLPLESPEPGTLLGLSNTPSPPPA 182
           EEAALAIQAA+G ++C K VKC WG+KP                  T+ G S+ P PPP 
Sbjct: 310 EEAALAIQAANGRVLCGKSVKCSWGSKP------------------TVPGSSSAPLPPPL 351

Query: 183 GQSP 194
             +P
Sbjct: 352 PVNP 355


>tr|Q9XEZ5|Q9XEZ5_LARLA Putative RNA-binding protein (Fragment)
           OS=Larix laricina GN=Sb12 PE=4 SV=1
          Length = 144

 Score = 50.1 bits (118), Expect = 8e-05
 Identities = 23/39 (58%), Positives = 27/39 (69%)
 Frame = +3

Query: 3   EEAALAIQAADGLIICEKRVKCDWGTKPNSLLGFSNRLP 119
           EEAALAIQ A+G +IC K +KC WG+KP      SN LP
Sbjct: 7   EEAALAIQLANGRVICGKSIKCSWGSKPTPPGASSNALP 45


>tr|O65051|O65051_PICMA Putative RNA-binding protein (Fragment)
           OS=Picea mariana GN=Sb12 PE=2 SV=1
          Length = 169

 Score = 50.1 bits (118), Expect = 8e-05
 Identities = 23/39 (58%), Positives = 27/39 (69%)
 Frame = +3

Query: 3   EEAALAIQAADGLIICEKRVKCDWGTKPNSLLGFSNRLP 119
           EEAALAIQ A+G +IC K +KC WG+KP      SN LP
Sbjct: 34  EEAALAIQLANGRVICGKSIKCSWGSKPTPPGASSNALP 72


>tr|B8LQR6|B8LQR6_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 490

 Score = 50.1 bits (118), Expect = 8e-05
 Identities = 23/39 (58%), Positives = 27/39 (69%)
 Frame = +3

Query: 3   EEAALAIQAADGLIICEKRVKCDWGTKPNSLLGFSNRLP 119
           EEAALAIQ A+G +IC K +KC WG+KP      SN LP
Sbjct: 354 EEAALAIQLANGRVICGKSIKCSWGSKPTPPGASSNALP 392


>tr|A7P528|A7P528_VITVI Chromosome chr4 scaffold_6, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00032377001
           PE=4 SV=1
          Length = 436

 Score = 47.4 bits (111), Expect = 5e-04
 Identities = 33/90 (36%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
 Frame = +3

Query: 3   EEAALAIQAADGLIICEKRVKCDWGTKPNSLLGFSNRLPLESPEPGTLLGLSNTPSPPPA 182
           EEAALAIQ A+G I+  K +KC WG+KP                  T LG ++ P PPPA
Sbjct: 312 EEAALAIQMANGRIVRGKSMKCSWGSKP------------------TPLGTASNPLPPPA 353

Query: 183 GQ---SPESFATTSVEPTEELTFTEG*ALS 263
                 P +       P E L +    ALS
Sbjct: 354 QPYQILPTAGINQGYSPAELLAYQRQLALS 383


>tr|A5AXH5|A5AXH5_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_023045 PE=4 SV=1
          Length = 844

 Score = 47.4 bits (111), Expect = 5e-04
 Identities = 33/90 (36%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
 Frame = +3

Query: 3   EEAALAIQAADGLIICEKRVKCDWGTKPNSLLGFSNRLPLESPEPGTLLGLSNTPSPPPA 182
           EEAALAIQ A+G I+  K +KC WG+KP                  T LG ++ P PPPA
Sbjct: 427 EEAALAIQMANGRIVRGKSMKCSWGSKP------------------TPLGTASNPLPPPA 468

Query: 183 GQ---SPESFATTSVEPTEELTFTEG*ALS 263
                 P +       P E L +    ALS
Sbjct: 469 QPYQILPTAGINQGYSPAELLAYQRQLALS 498


>tr|A7PDT2|A7PDT2_VITVI Chromosome chr11 scaffold_13, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00016402001
           PE=4 SV=1
          Length = 393

 Score = 46.2 bits (108), Expect = 0.001
 Identities = 25/59 (42%), Positives = 30/59 (50%)
 Frame = +3

Query: 6   EAALAIQAADGLIICEKRVKCDWGTKPNSLLGFSNRLPLESPEPGTLLGLSNTPSPPPA 182
           EAALAIQ  +  I+C K +KC WG+KP                  T  G S+TP PPPA
Sbjct: 302 EAALAIQMGNARILCGKPIKCSWGSKP------------------TPAGTSSTPLPPPA 342


>tr|B6T6H4|B6T6H4_MAIZE mRNA 3-UTR binding protein OS=Zea mays PE=2
           SV=1
          Length = 449

 Score = 44.3 bits (103), Expect = 0.004
 Identities = 26/71 (36%), Positives = 34/71 (47%)
 Frame = +3

Query: 6   EAALAIQAADGLIICEKRVKCDWGTKPNSLLGFSNRLPLESPEPGTLLGLSNTPSPPPAG 185
           EAALAIQ A+GL++  K +KC WG KP                PGT    ++ P PPP  
Sbjct: 331 EAALAIQMANGLVVRGKSIKCSWGNKPT--------------PPGT----TSKPLPPPVA 372

Query: 186 QSPESFATTSV 218
               + A + V
Sbjct: 373 SYQPAVAMSGV 383


>tr|B4FRG6|B4FRG6_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 424

 Score = 44.3 bits (103), Expect = 0.004
 Identities = 26/71 (36%), Positives = 34/71 (47%)
 Frame = +3

Query: 6   EAALAIQAADGLIICEKRVKCDWGTKPNSLLGFSNRLPLESPEPGTLLGLSNTPSPPPAG 185
           EAALAIQ A+GL++  K +KC WG KP                PGT    ++ P PPP  
Sbjct: 306 EAALAIQMANGLVVRGKSIKCSWGNKPT--------------PPGT----TSKPLPPPVA 347

Query: 186 QSPESFATTSV 218
               + A + V
Sbjct: 348 SYQPAVAMSGV 358


>tr|Q6YZW2|Q6YZW2_ORYSJ Os08g0520300 protein OS=Oryza sativa subsp.
           japonica GN=OJ1003_A09.12 PE=2 SV=1
          Length = 447

 Score = 43.9 bits (102), Expect = 0.006
 Identities = 27/71 (38%), Positives = 37/71 (52%)
 Frame = +3

Query: 6   EAALAIQAADGLIICEKRVKCDWGTKPNSLLGFSNRLPLESPEPGTLLGLSNTPSPPPAG 185
           EAALAIQ A+GL++  K +KC WG KP    G S++ PL  P P        +  P P  
Sbjct: 331 EAALAIQMANGLVVRGKPIKCSWGNKPTP-PGTSSK-PLPPPLP--------SYQPVPMA 380

Query: 186 QSPESFATTSV 218
             P+ F+   +
Sbjct: 381 GVPQGFSAADI 391