BP914046 |
Clone id |
YMU001_000039_C06 |
Library |
YMU01 |
Length |
451 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000039_C06. |
Accession |
BP914046 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL1790Contig1 |
Sequence |
CTCCGAACTGAGCGGGATGCAGTACGCACAGGGTCCTCCAAGGTTCTCCAAGTAAGGTTG TAGCTGAGATCATGGCGTTTGGATACCAATCCAGCAGAGAGTCCTACAATACGCTCTGTA TAGGAAGAATACTTCATCCAATCCTGACCAAATATAGATGCCCTGGTCACAAAGGCAGCT GGGAAATCTTTAAACCTAGGATAGTACAATCCAGCACTGAACTCTGTTGCACCATCCCAG CTATAACTACCAGTGCCATCCCAAGTTTCTGCACGCCCAAGGAGGTTCTTCAATTTCAAG GACCCTTCAAATATACAATTCCGTGTCTCAGGCTTGGTGTAAACTCCCATGTCACCAGAG TAGACTCTACTAGGTTCCTTTACACTCACAATGACATTGGCAGTACCAGGAAGCTCCACA GGCCCAGGCTCAAGACTGATGACACACTCTT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q6AXV4 |
Definition |
sp|Q6AXV4|SAM50_RAT Sorting and assembly machinery component 50 homolog OS=Rattus norvegicus |
Align length |
154 |
Score (bit) |
38.5 |
E-value |
0.012 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9TR39 |
Definition |
tr|A9TR39|A9TR39_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
145 |
Score (bit) |
174.0 |
E-value |
2.0e-42 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP914046|Adiantum capillus-veneris mRNA, clone: YMU001_000039_C06. (435 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9TR39|A9TR39_PHYPA Predicted protein OS=Physcomitrella paten... 174 2e-42 tr|A9RN88|A9RN88_PHYPA Predicted protein OS=Physcomitrella paten... 173 3e-42 tr|B4FZ28|B4FZ28_MAIZE Putative uncharacterized protein OS=Zea m... 168 1e-40 tr|Q6ATX4|Q6ATX4_ORYSJ Os05g0470800 protein OS=Oryza sativa subs... 166 4e-40 tr|A2Y5M6|A2Y5M6_ORYSI Putative uncharacterized protein OS=Oryza... 166 4e-40 tr|A7Q3L8|A7Q3L8_VITVI Chromosome chr13 scaffold_48, whole genom... 166 5e-40 tr|A5C9V5|A5C9V5_VITVI Putative uncharacterized protein OS=Vitis... 166 5e-40 tr|Q9FFG3|Q9FFG3_ARATH Arabidopsis thaliana genomic DNA, chromos... 148 1e-34 tr|Q8LEH7|Q8LEH7_ARATH Putative uncharacterized protein OS=Arabi... 148 1e-34 tr|A9PF20|A9PF20_POPTR Putative uncharacterized protein OS=Popul... 138 2e-31 tr|Q9SRL6|Q9SRL6_ARATH Putative uncharacterized protein F9F8.12 ... 134 2e-30 tr|B6SPX1|B6SPX1_MAIZE Outer membrane protein, OMP85 family prot... 122 7e-27 tr|Q2RBM6|Q2RBM6_ORYSJ Outer membrane protein, OMP85 family prot... 115 1e-24 tr|Q2QYV1|Q2QYV1_ORYSJ Os12g0105700 protein OS=Oryza sativa subs... 115 1e-24 tr|Q0IV82|Q0IV82_ORYSJ Os11g0106200 protein (Fragment) OS=Oryza ... 115 1e-24 tr|B8BNT7|B8BNT7_ORYSI Putative uncharacterized protein OS=Oryza... 115 1e-24 tr|B8BNT0|B8BNT0_ORYSI Putative uncharacterized protein OS=Oryza... 115 1e-24 tr|B7EKD0|B7EKD0_ORYSJ cDNA clone:J013119I16, full insert sequen... 115 1e-24 tr|B7ECH1|B7ECH1_ORYSJ cDNA clone:J013071M22, full insert sequen... 115 1e-24 tr|A3CE62|A3CE62_ORYSJ Putative uncharacterized protein OS=Oryza... 115 1e-24 tr|A3C7T7|A3C7T7_ORYSJ Putative uncharacterized protein OS=Oryza... 101 2e-20 tr|Q5KEW4|Q5KEW4_CRYNE Mitochondrion protein, putative OS=Crypto... 45 0.001 tr|A4RYA1|A4RYA1_OSTLU Predicted protein OS=Ostreococcus lucimar... 43 0.009 tr|B4FIX9|B4FIX9_MAIZE Putative uncharacterized protein OS=Zea m... 42 0.015 tr|Q017Y3|Q017Y3_OSTTA Predicted cell surface protein homologous... 40 0.058 tr|Q803G5|Q803G5_DANRE Sorting and assembly machinery component ... 37 0.38 tr|Q7ZWS5|Q7ZWS5_XENLA Cgi-51-prov protein OS=Xenopus laevis PE=... 37 0.49 tr|Q6P806|Q6P806_XENTR CGI-51 protein OS=Xenopus tropicalis GN=c... 37 0.49 tr|Q56VW7|Q56VW7_HUMAN Transformation-related protein 3 OS=Homo ... 37 0.49 tr|Q53HC4|Q53HC4_HUMAN CGI-51 protein variant (Fragment) OS=Homo... 37 0.49
>tr|A9TR39|A9TR39_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_224626 PE=4 SV=1 Length = 471
Score = 174 bits (441), Expect = 2e-42 Identities = 83/145 (57%), Positives = 107/145 (73%), Gaps = 1/145 (0%) Frame = -2
Query: 434 LEPGPVELPGTANVIVSVKEPSRVYSGDMGVYTKPETRNCIFEGSLKLKNLLGRAETWDG 255 L+ GP ELPGTANVI+ V+E R++SGD+G+++KPET+ EG++K KNL G AET D Sbjct: 73 LDAGPQELPGTANVILEVEEVKRLFSGDLGMFSKPETKAWTLEGTVKYKNLAGLAETLDA 132
Query: 254 TGSYSWDGATEFSAGLYYPRFKDFPAAFVTRASIFGQDWMKYSSYTERIVGLSAGLV-SK 78 TG Y D +E SAG+ YPRFK PA+ TR ++ QDW +YSSY ER+ G S GLV Sbjct: 133 TGCYGLDTTSELSAGVTYPRFKGLPASLATRLTLLTQDWQRYSSYRERLTGFSVGLVGDN 192
Query: 77 RHDLSYNLTWRTLEDPVRTASRSVR 3 +HD+SYNLTWR L+DP R+AS+SVR Sbjct: 193 QHDISYNLTWRDLKDPSRSASKSVR 217
>tr|A9RN88|A9RN88_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_116967 PE=4 SV=1 Length = 488
Score = 173 bits (439), Expect = 3e-42 Identities = 86/145 (59%), Positives = 105/145 (72%), Gaps = 1/145 (0%) Frame = -2
Query: 434 LEPGPVELPGTANVIVSVKEPSRVYSGDMGVYTKPETRNCIFEGSLKLKNLLGRAETWDG 255 L+ GP ELPGTANVIV V+E R +SGD+GV++KPET+ EG +K KNL G AET D Sbjct: 90 LDAGPEELPGTANVIVEVEEAKRPFSGDLGVFSKPETKAWTLEGLVKYKNLSGFAETIDA 149
Query: 254 TGSYSWDGATEFSAGLYYPRFKDFPAAFVTRASIFGQDWMKYSSYTERIVGLSAGLV-SK 78 TG Y D +E SAG+ YPRFK PA+ VTR ++ QDW +YSSY ER+ G S GLV Sbjct: 150 TGCYGLDTTSELSAGVTYPRFKGLPASLVTRLTLLTQDWKRYSSYRERLTGFSVGLVGDD 209
Query: 77 RHDLSYNLTWRTLEDPVRTASRSVR 3 +HD+SYNLTWR L+DP R AS+SVR Sbjct: 210 QHDISYNLTWRDLKDPSRCASKSVR 234
>tr|B4FZ28|B4FZ28_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 401
Score = 168 bits (425), Expect = 1e-40 Identities = 79/145 (54%), Positives = 100/145 (68%), Gaps = 1/145 (0%) Frame = -2
Query: 434 LEPGPVELPGTANVIVSVKEPSRVYSGDMGVYTKPETRNCIFEGSLKLKNLLGRAETWDG 255 L+ GP ELPGT NV++ V E + +G GVY+KPE R+ EGSLKLKNL G + WD Sbjct: 134 LDAGPPELPGTTNVVIEVVEVANPLTGTAGVYSKPEARSWSLEGSLKLKNLFGYGDIWDA 193
Query: 254 TGSYSWDGATEFSAGLYYPRFKDFPAAFVTRASIFGQDWMKYSSYTERIVGLSAGLVSKR 75 +GS+ WD TE G+ PRFK P + RAS+ QDW+K+SSY ER++GLS GL+S R Sbjct: 194 SGSFGWDQTTEVGVGVCLPRFKSIPTPLMARASLSSQDWLKFSSYKERLLGLSFGLLSTR 253
Query: 74 -HDLSYNLTWRTLEDPVRTASRSVR 3 HDLSYNL WRTL DP R +S ++R Sbjct: 254 NHDLSYNLAWRTLTDPSRVSSEAIR 278
>tr|Q6ATX4|Q6ATX4_ORYSJ Os05g0470800 protein OS=Oryza sativa subsp. japonica GN=P0015C02.2 PE=4 SV=1 Length = 520
Score = 166 bits (421), Expect = 4e-40 Identities = 78/145 (53%), Positives = 102/145 (70%), Gaps = 1/145 (0%) Frame = -2
Query: 434 LEPGPVELPGTANVIVSVKEPSRVYSGDMGVYTKPETRNCIFEGSLKLKNLLGRAETWDG 255 L+ GP ELPGT NV+V V E + +G GVY+KPE R+ EGS+KLKNL G + WD Sbjct: 126 LDAGPPELPGTTNVVVEVVEAANPITGSAGVYSKPEARSWSLEGSVKLKNLFGYGDIWDA 185
Query: 254 TGSYSWDGATEFSAGLYYPRFKDFPAAFVTRASIFGQDWMKYSSYTERIVGLSAGLVS-K 78 +G+YSWD +E G+ PRFK + RAS+ QDW+K+SSY ER++GLS GL+S Sbjct: 186 SGAYSWDQTSEVGIGVSLPRFKSISTPLMARASLSSQDWLKFSSYKERLLGLSFGLISTM 245
Query: 77 RHDLSYNLTWRTLEDPVRTASRSVR 3 +HDLSYNLTWRTL DP + +S+S+R Sbjct: 246 QHDLSYNLTWRTLTDPSQVSSKSIR 270
>tr|A2Y5M6|A2Y5M6_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_20297 PE=4 SV=1 Length = 520
Score = 166 bits (421), Expect = 4e-40 Identities = 78/145 (53%), Positives = 102/145 (70%), Gaps = 1/145 (0%) Frame = -2
Query: 434 LEPGPVELPGTANVIVSVKEPSRVYSGDMGVYTKPETRNCIFEGSLKLKNLLGRAETWDG 255 L+ GP ELPGT NV+V V E + +G GVY+KPE R+ EGS+KLKNL G + WD Sbjct: 126 LDAGPPELPGTTNVVVEVVEAANPITGSAGVYSKPEARSWSLEGSVKLKNLFGYGDIWDA 185
Query: 254 TGSYSWDGATEFSAGLYYPRFKDFPAAFVTRASIFGQDWMKYSSYTERIVGLSAGLVS-K 78 +G+YSWD +E G+ PRFK + RAS+ QDW+K+SSY ER++GLS GL+S Sbjct: 186 SGAYSWDQTSEVGIGVSLPRFKSISTPLMARASLSSQDWLKFSSYKERLLGLSFGLISTM 245
Query: 77 RHDLSYNLTWRTLEDPVRTASRSVR 3 +HDLSYNLTWRTL DP + +S+S+R Sbjct: 246 QHDLSYNLTWRTLTDPSQVSSKSIR 270
>tr|A7Q3L8|A7Q3L8_VITVI Chromosome chr13 scaffold_48, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00029336001 PE=4 SV=1 Length = 464
Score = 166 bits (420), Expect = 5e-40 Identities = 80/145 (55%), Positives = 101/145 (69%), Gaps = 1/145 (0%) Frame = -2
Query: 434 LEPGPVELPGTANVIVSVKEPSRVYSGDMGVYTKPETRNCIFEGSLKLKNLLGRAETWDG 255 L+ GP ELPGT NVIV V E +GD+G++TKPE R EGSLKLKNL G + WDG Sbjct: 70 LDCGPPELPGTVNVIVDVVETKNPLTGDLGIFTKPEARTWSLEGSLKLKNLFGYGDLWDG 129
Query: 254 TGSYSWDGATEFSAGLYYPRFKDFPAAFVTRASIFGQDWMKYSSYTERIVGLSAGLVS-K 78 + Y WD ++E SAG+ PRFK + R S+ QDW+K+SSY ER +GL+ GL+S K Sbjct: 130 SLVYGWDQSSEISAGVSLPRFKGMVTPMLARVSLLSQDWLKFSSYKERSLGLNLGLISTK 189
Query: 77 RHDLSYNLTWRTLEDPVRTASRSVR 3 RHDL+YNL WRTL DP + +SR+VR Sbjct: 190 RHDLTYNLLWRTLTDPSQMSSRAVR 214
>tr|A5C9V5|A5C9V5_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_041873 PE=4 SV=1 Length = 564
Score = 166 bits (420), Expect = 5e-40 Identities = 80/145 (55%), Positives = 101/145 (69%), Gaps = 1/145 (0%) Frame = -2
Query: 434 LEPGPVELPGTANVIVSVKEPSRVYSGDMGVYTKPETRNCIFEGSLKLKNLLGRAETWDG 255 L+ GP ELPGT NVIV V E +GD+G++TKPE R EGSLKLKNL G + WDG Sbjct: 140 LDCGPPELPGTVNVIVDVVETKNPLTGDLGIFTKPEARTWSLEGSLKLKNLFGYGDLWDG 199
Query: 254 TGSYSWDGATEFSAGLYYPRFKDFPAAFVTRASIFGQDWMKYSSYTERIVGLSAGLVS-K 78 + Y WD ++E SAG+ PRFK + R S+ QDW+K+SSY ER +GL+ GL+S K Sbjct: 200 SLVYGWDQSSEISAGVSLPRFKGMVTPMLARVSLLSQDWLKFSSYKERSLGLNLGLISTK 259
Query: 77 RHDLSYNLTWRTLEDPVRTASRSVR 3 RHDL+YNL WRTL DP + +SR+VR Sbjct: 260 RHDLTYNLLWRTLTDPSQMSSRAVR 284
>tr|Q9FFG3|Q9FFG3_ARATH Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MOP10 (Putative uncharacterized protein MOP10.6) OS=Arabidopsis thaliana GN=MOP10.6 PE=2 SV=1 Length = 524
Score = 148 bits (374), Expect = 1e-34 Identities = 70/145 (48%), Positives = 95/145 (65%), Gaps = 1/145 (0%) Frame = -2
Query: 434 LEPGPVELPGTANVIVSVKEPSRVYSGDMGVYTKPETRNCIFEGSLKLKNLLGRAETWDG 255 L+ GP ELPGT NV++ V E +G +G +TK E R+ EGSLK KN+ G + WDG Sbjct: 132 LDSGPPELPGTTNVVIDVVESKSPITGQIGTFTKAEARSSSLEGSLKYKNIFGYGDIWDG 191
Query: 254 TGSYSWDGATEFSAGLYYPRFKDFPAAFVTRASIFGQDWMKYSSYTERIVGLSAGLV-SK 78 + +Y D + E G+Y PRF+ P F +R + QDW+K+SSY ER +GLS GL+ SK Sbjct: 192 SLAYGCDHSAEVGLGMYLPRFRGRPTPFTSRVYLSTQDWLKFSSYKERALGLSLGLIASK 251
Query: 77 RHDLSYNLTWRTLEDPVRTASRSVR 3 H+L+YN+ WR L DP + ASRS+R Sbjct: 252 YHELAYNIAWRNLIDPSQMASRSIR 276
>tr|Q8LEH7|Q8LEH7_ARATH Putative uncharacterized protein OS=Arabidopsis thaliana PE=2 SV=1 Length = 524
Score = 148 bits (374), Expect = 1e-34 Identities = 70/145 (48%), Positives = 95/145 (65%), Gaps = 1/145 (0%) Frame = -2
Query: 434 LEPGPVELPGTANVIVSVKEPSRVYSGDMGVYTKPETRNCIFEGSLKLKNLLGRAETWDG 255 L+ GP ELPGT NV++ V E +G +G +TK E R+ EGSLK KN+ G + WDG Sbjct: 132 LDSGPPELPGTTNVVIDVVESKSPITGQIGTFTKAEARSSSLEGSLKYKNIFGYGDIWDG 191
Query: 254 TGSYSWDGATEFSAGLYYPRFKDFPAAFVTRASIFGQDWMKYSSYTERIVGLSAGLV-SK 78 + +Y D + E G+Y PRF+ P F +R + QDW+K+SSY ER +GLS GL+ SK Sbjct: 192 SLAYGCDHSAEVGLGMYLPRFRGRPTPFTSRVYLSTQDWLKFSSYKERALGLSLGLIASK 251
Query: 77 RHDLSYNLTWRTLEDPVRTASRSVR 3 H+L+YN+ WR L DP + ASRS+R Sbjct: 252 YHELAYNIAWRNLIDPSQMASRSIR 276
>tr|A9PF20|A9PF20_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 Length = 519
Score = 138 bits (347), Expect = 2e-31 Identities = 72/145 (49%), Positives = 91/145 (62%), Gaps = 1/145 (0%) Frame = -2
Query: 434 LEPGPVELPGTANVIVSVKEPSRVYSGDMGVYTKPETRNCIFEGSLKLKNLLGRAETWDG 255 ++ GP ELPGTANVIV V E G++GV+ K E + EG+LK KN+ G + WDG Sbjct: 125 IDSGPPELPGTANVIVDVVETKSPLLGEIGVFNKGEASSSTLEGTLKYKNIFGYGDLWDG 184
Query: 254 TGSYSWDGATEFSAGLYYPRFKDFPAAFVTRASIFGQDWMKYSSYTERIVGLSAGLVSKR 75 + +Y D E SAG++ PRFK R + QD +K+SS+ ER +GLS GL S R Sbjct: 185 SLAYDCDHKAEVSAGVFLPRFKGLVNPVTARLFLQSQDCLKFSSFKERSLGLSLGLFSTR 244
Query: 74 -HDLSYNLTWRTLEDPVRTASRSVR 3 HD+ YNL WRTL DP RTAS SVR Sbjct: 245 NHDVVYNLAWRTLTDPSRTASSSVR 269
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