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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914047
Clone id YMU001_000039_C07
Library
Length 412
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000039_C07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TACGGGCGCCACCATCATATGATATATCACCTACACCGGCTATCCAACATCACTCGTCTA
GAACACCCTCTAGAAATATGCCTCGGTGATAACAACATCCAGCTCGCCAAAGCCTATGGA
GATGCTGTCATTAACCTACCTAATGGCCTACACACCACTATTTCTCACCTATATTAGTCC
CTGGTCTCAAGAAAAATCTCATCTCTGTCAGCAAGCTAACCGACAACGGCATCATCATCA
AATTTCATGCGAGAAGGCTGCCACATTTTGCACTAAACAAAGATGGTCAGTATGTCACAC
TTTTGGTCCCCAAAACTGGGCGTCTTTATCCATTGGGTGACTCATCGCCTGCACATGCAT
CTGCATCATCCATAAAAACACAAGAAAACACATTCAAATGGCATTATAGACG
■■Homology search results ■■ -
sp_hit_id Q67EQ0
Definition sp|Q67EQ0|CLC4A_RAT C-type lectin domain family 4 member A OS=Rattus norvegicus
Align length 66
Score (bit) 31.2
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914047|Adiantum capillus-veneris mRNA, clone:
YMU001_000039_C07.
         (412 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q67EQ0|CLC4A_RAT C-type lectin domain family 4 member A OS=Ra...    31   1.7  
sp|Q750S2|SCC2_ASHGO Sister chromatid cohesion protein 2 OS=Ashb...    30   3.8  
sp|Q9QZ15|CLC4A_MOUSE C-type lectin domain family 4 member A OS=...    30   3.8  
sp|Q6ZT46|YK027_HUMAN Putative uncharacterized protein FLJ44967 ...    29   6.5  
sp|Q08AA9|NKD_ANOGA Protein naked cuticle homolog OS=Anopheles g...    29   8.4  
sp|P74981|HMUV_YEREN Hemin import ATP-binding protein hmuV OS=Ye...    29   8.4  
sp|Q6D645|HMUV_ERWCT Hemin import ATP-binding protein hmuV OS=Er...    29   8.4  

>sp|Q67EQ0|CLC4A_RAT C-type lectin domain family 4 member A
           OS=Rattus norvegicus GN=Clec4a PE=2 SV=1
          Length = 240

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 19/66 (28%), Positives = 35/66 (53%)
 Frame = +2

Query: 122 MLSLTYLMAYTPLFLTYISPWSQEKSHLCQQANRQRHHHQISCEKAATFCTKQRWSVCHT 301
           +L++T+L+A+   F  Y S + +EK     +A +   H +++C K      ++ WS C  
Sbjct: 56  LLAITFLVAFIIYFQKY-SQFLEEK-----KAIKGITHKELNCIKNVLLMEEKSWSCC-- 107

Query: 302 FGPQNW 319
             P+NW
Sbjct: 108 --PKNW 111


>sp|Q750S2|SCC2_ASHGO Sister chromatid cohesion protein 2 OS=Ashbya
           gossypii GN=SCC2 PE=3 SV=1
          Length = 1479

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -2

Query: 378 FLWMMQMHVQAMSHPMDKDAQFWGPKV*HTDHLCLVQNV 262
           FLW  Q+ V      MDK++Q WG K+     L L++++
Sbjct: 614 FLWCKQLDVLTKLKEMDKESQGWGSKL-QQKFLSLIESI 651


>sp|Q9QZ15|CLC4A_MOUSE C-type lectin domain family 4 member A OS=Mus
           musculus GN=Clec4a PE=1 SV=1
          Length = 238

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 17/66 (25%), Positives = 36/66 (54%)
 Frame = +2

Query: 122 MLSLTYLMAYTPLFLTYISPWSQEKSHLCQQANRQRHHHQISCEKAATFCTKQRWSVCHT 301
           +L++T+L+A    F+ Y   +SQ      ++A +   H++++C K+ +    + WS C  
Sbjct: 56  LLAITFLVA----FIIYFQKYSQLLEE--KKAAKNIMHNELNCTKSVSPMEDKVWSCC-- 107

Query: 302 FGPQNW 319
             P++W
Sbjct: 108 --PKDW 111


>sp|Q6ZT46|YK027_HUMAN Putative uncharacterized protein FLJ44967
           OS=Homo sapiens PE=5 SV=2
          Length = 303

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +2

Query: 95  TSSSPKPMEMLSLTYLMAYTPLFLTYISPWSQEKSHLCQ 211
           + SSP+ + M S   L   +P  L+  SPW   KS LC+
Sbjct: 170 SKSSPRGLSMSSPRGLSKSSPRGLSKSSPWGLSKSFLCR 208


>sp|Q08AA9|NKD_ANOGA Protein naked cuticle homolog OS=Anopheles
           gambiae GN=nkd PE=2 SV=1
          Length = 886

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 185 SQEKSHLCQQANRQRHHHQISCEKAATFCTK 277
           S  K+ LC Q NR++ HH+++    AT  T+
Sbjct: 572 SMVKNSLCFQPNRRKEHHRLAAAVGATRSTQ 602


>sp|P74981|HMUV_YEREN Hemin import ATP-binding protein hmuV
           OS=Yersinia enterocolitica GN=hmuV PE=1 SV=2
          Length = 266

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +1

Query: 13  HHMIYHLHRLSNITRLEHPLEICLGDNNIQLAKAYGDAVINLPNG 147
           +H  + L  L  +T LE PL +C   +++ LA  Y D ++ L  G
Sbjct: 181 YHQQHTLRLLRQLT-LEEPLAVCCVLHDLNLAALYADRILLLAQG 224


>sp|Q6D645|HMUV_ERWCT Hemin import ATP-binding protein hmuV
           OS=Erwinia carotovora subsp. atroseptica GN=hmuV PE=3
           SV=1
          Length = 265

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +1

Query: 13  HHMIYHLHRLSNITRLEHPLEICLGDNNIQLAKAYGDAVINLPNG 147
           +H  + L  L  +TR E PL +C   +++ LA  Y D ++ L  G
Sbjct: 180 YHQQHLLRLLKQLTR-EQPLAVCCVLHDLNLAALYADRILLLHEG 223
tr_hit_id A9NWA6
Definition tr|A9NWA6|A9NWA6_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 60
Score (bit) 32.3
E-value 0.003
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914047|Adiantum capillus-veneris mRNA, clone:
YMU001_000039_C07.
         (412 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NWA6|A9NWA6_PICSI Putative uncharacterized protein OS=Picea...    32   0.003
tr|Q9FWG3|Q9FWG3_ORYSA Putative gag/pol polyprotein OS=Oryza sat...    43   0.007
tr|Q9FRJ2|Q9FRJ2_ORYSA Putative copia-like retrotransposon polyp...    43   0.007
tr|Q8S805|Q8S805_ORYSJ Putative copia-type polyprotein OS=Oryza ...    43   0.007
tr|Q336W4|Q336W4_ORYSJ Retrotransposon protein, putative, unclas...    43   0.007
tr|A5CBM6|A5CBM6_VITVI Putative uncharacterized protein OS=Vitis...    41   0.034
tr|A5B4X5|A5B4X5_VITVI Putative uncharacterized protein OS=Vitis...    37   0.056
tr|A5BRC3|A5BRC3_VITVI Putative uncharacterized protein OS=Vitis...    40   0.058
tr|A5C7A6|A5C7A6_VITVI Putative uncharacterized protein OS=Vitis...    39   0.100
tr|A5B7U3|A5B7U3_VITVI Putative uncharacterized protein OS=Vitis...    39   0.13 
tr|Q6L3U1|Q6L3U1_SOLDE Putative polyprotein, identical OS=Solanu...    39   0.17 
tr|A5BMU9|A5BMU9_VITVI Putative uncharacterized protein OS=Vitis...    37   0.38 
tr|B8YLY6|B8YLY6_MEDTR Gag-Pol polyprotein OS=Medicago truncatul...    37   0.49 
tr|B8YLY5|B8YLY5_MEDTR Gag-Pol polyprotein OS=Medicago truncatul...    37   0.49 
tr|B8YLY4|B8YLY4_MEDTR Gag-Pol polyprotein OS=Medicago truncatul...    37   0.49 
tr|Q7G6C4|Q7G6C4_ORYSJ Putative gag-pol polyprotein (Retrotransp...    37   0.65 
tr|B8YLY3|B8YLY3_MEDTR Gag-Pol polyprotein OS=Medicago truncatul...    37   0.65 
tr|A5BQ40|A5BQ40_VITVI Putative uncharacterized protein OS=Vitis...    37   0.65 
tr|Q2HU05|Q2HU05_MEDTR Integrase, catalytic region; Zinc finger,...    36   0.84 
tr|B6TJ15|B6TJ15_MAIZE Putative uncharacterized protein OS=Zea m...    36   0.84 
tr|A5AHZ9|A5AHZ9_VITVI Putative uncharacterized protein OS=Vitis...    33   0.89 
tr|A5BMW1|A5BMW1_VITVI Putative uncharacterized protein OS=Vitis...    34   0.95 
tr|Q6RZV4|Q6RZV4_MUSAC Retrotransposon-like protein OS=Musa acum...    35   1.4  
tr|Q18L98|Q18L98_CITSI Putative gag-pol polyprotein OS=Citrus si...    35   1.4  
tr|A2Q5V3|A2Q5V3_MEDTR Peptidase aspartic, catalytic; Polynucleo...    35   1.4  
tr|Q60EV4|Q60EV4_ORYSJ Putative polyprotein OS=Oryza sativa subs...    35   1.9  
tr|A5C715|A5C715_VITVI Putative uncharacterized protein OS=Vitis...    35   1.9  
tr|A5AS29|A5AS29_VITVI Putative uncharacterized protein OS=Vitis...    35   1.9  
tr|Q75IL9|Q75IL9_ORYSJ Pupative polyprotein OS=Oryza sativa subs...    28   3.1  
tr|A5BNN7|A5BNN7_VITVI Putative uncharacterized protein OS=Vitis...    34   3.2  

>tr|A9NWA6|A9NWA6_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 173

 Score = 32.3 bits (72), Expect(2) = 0.003
 Identities = 19/60 (31%), Positives = 31/60 (51%)
 Frame = +3

Query: 156 HYFSPILVPGLKKNLISVSKLTDNGIIIKFHARRLPHFALNKDGQYVTLLVPKTGRLYPL 335
           H  + + VPGL+KNL+S+S L D G  I F   ++  +  +   +   ++    G LY L
Sbjct: 112 HLSNVLYVPGLEKNLVSISCLEDKGNRIAFIDEKVLSWHKDSSIEDARVIGRHEGNLYRL 171



 Score = 31.6 bits (70), Expect(2) = 0.003
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = +1

Query: 4   GRHHHMIYHLHRLSNITRLEHPLEICLGDNNIQLAKAYGDAVINLPNGLHTTISHL 171
           G   HM+    RLS++   +   ++ LGD +    + +G A I L +G H  +S++
Sbjct: 61  GASRHMMGDQARLSDLNERKTSYKVELGDKSTYPVEGFGQASIKLESGNHVHLSNV 116


>tr|Q9FWG3|Q9FWG3_ORYSA Putative gag/pol polyprotein OS=Oryza sativa
           GN=OSJNBb0015I11.24 PE=4 SV=2
          Length = 1417

 Score = 43.1 bits (100), Expect = 0.007
 Identities = 37/95 (38%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
 Frame = +3

Query: 129 H*PT*WPTHHYFSPILVPGLKKNLISVSKLT-DNGIIIKFHARRLPHFALNKDGQYVTLL 305
           H PT     H  + ++ P L KNLISV KLT DN + I+F         L    Q V L 
Sbjct: 414 HIPTSSTDLHLHNVLVSPPLIKNLISVKKLTRDNNVSIEFDPTGFSIKDLQT--QVVKLR 471

Query: 306 VPKTGRLYPLGDSSPAHASASSIKTQENTFKWHYR 410
               G LYPL   SP   SA+S  + E+   WH R
Sbjct: 472 CDSPGDLYPLRLPSPHALSATSSPSVEH---WHLR 503


>tr|Q9FRJ2|Q9FRJ2_ORYSA Putative copia-like retrotransposon
           polyprotein OS=Oryza sativa GN=OSJNBb0064P21.11 PE=4
           SV=1
          Length = 1302

 Score = 43.1 bits (100), Expect = 0.007
 Identities = 37/95 (38%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
 Frame = +3

Query: 129 H*PT*WPTHHYFSPILVPGLKKNLISVSKLT-DNGIIIKFHARRLPHFALNKDGQYVTLL 305
           H PT     H  + ++ P L KNLISV KLT DN + I+F         L    Q V L 
Sbjct: 414 HIPTSSTDLHLHNVLVSPPLIKNLISVKKLTRDNNVSIEFDPTGFSIKDLQT--QVVKLR 471

Query: 306 VPKTGRLYPLGDSSPAHASASSIKTQENTFKWHYR 410
               G LYPL   SP   SA+S  + E+   WH R
Sbjct: 472 CDSPGDLYPLRLPSPHALSATSSPSVEH---WHLR 503


>tr|Q8S805|Q8S805_ORYSJ Putative copia-type polyprotein OS=Oryza
           sativa subsp. japonica GN=OSJNBa0020E23.19 PE=4 SV=1
          Length = 1803

 Score = 43.1 bits (100), Expect = 0.007
 Identities = 37/95 (38%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
 Frame = +3

Query: 129 H*PT*WPTHHYFSPILVPGLKKNLISVSKLT-DNGIIIKFHARRLPHFALNKDGQYVTLL 305
           H PT     H  + ++ P L KNLISV KLT DN + I+F         L    Q V L 
Sbjct: 414 HIPTSSTDLHLHNVLVSPPLIKNLISVKKLTRDNNVSIEFDPTGFSIKDLQT--QVVKLR 471

Query: 306 VPKTGRLYPLGDSSPAHASASSIKTQENTFKWHYR 410
               G LYPL   SP   SA+S  + E+   WH R
Sbjct: 472 CDSPGDLYPLRLPSPHALSATSSPSVEH---WHLR 503


>tr|Q336W4|Q336W4_ORYSJ Retrotransposon protein, putative,
           unclassified OS=Oryza sativa subsp. japonica
           GN=LOC_Os10g39530 PE=4 SV=2
          Length = 1414

 Score = 43.1 bits (100), Expect = 0.007
 Identities = 37/95 (38%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
 Frame = +3

Query: 129 H*PT*WPTHHYFSPILVPGLKKNLISVSKLT-DNGIIIKFHARRLPHFALNKDGQYVTLL 305
           H PT     H  + ++ P L KNLISV KLT DN + I+F         L    Q V L 
Sbjct: 414 HIPTSSTDLHLHNVLVSPPLIKNLISVKKLTRDNNVSIEFDPTGFSIKDLQT--QVVKLR 471

Query: 306 VPKTGRLYPLGDSSPAHASASSIKTQENTFKWHYR 410
               G LYPL   SP   SA+S  + E+   WH R
Sbjct: 472 CDSPGDLYPLRLPSPHALSATSSPSVEH---WHLR 503


>tr|A5CBM6|A5CBM6_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_030041 PE=4 SV=1
          Length = 1429

 Score = 40.8 bits (94), Expect = 0.034
 Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
 Frame = +3

Query: 171 ILVPGLKKNLISVSKLT-DNGIIIKFHARRLPHFALNKDGQYVTLLV--PKTGRLYPLGD 341
           + VP + KNLISV   T  N +I++FH    P + L KD +   +L+  P    +YPL  
Sbjct: 249 LCVPTINKNLISVHHYTKQNNVILEFH----PTYFLAKDWRTGEILLQGPCENGVYPLA- 303

Query: 342 SSPAHASASSIKTQENTFKWHYR 410
           SSPA    + +  + +   WH R
Sbjct: 304 SSPAATPIAFVHERTSAXGWHXR 326


>tr|A5B4X5|A5B4X5_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_007721 PE=4 SV=1
          Length = 631

 Score = 36.6 bits (83), Expect(2) = 0.056
 Identities = 35/92 (38%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
 Frame = +3

Query: 150 THHYF---SPILVPGLKKNLISVSKL-TDNGIIIKFHARRLPHFALNKDGQY-VTLLVPK 314
           TH+ F   + + VP +KKNLIS+S+  T N + I+F    LP   L KD Q  +TLL   
Sbjct: 64  THNTFKLNNVLYVPTMKKNLISISQFGTSNNVSIEF----LPTALLVKDIQTGITLLKGN 119

Query: 315 TGRLYPLGDSSPAHASASSIKTQENTFKWHYR 410
           T         SP   + SS+KT     +WH R
Sbjct: 120 TKDGVNEWPVSPPLLAFSSLKT--TLSEWHQR 149



 Score = 22.7 bits (47), Expect(2) = 0.056
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +1

Query: 4   GRHHHMIYHLHRLSNITRLEHPLEICLGDNN 96
           G  HH+   LH LS  T      +I +GD +
Sbjct: 19  GASHHVTTDLHNLSMHTPYNGSDDIMIGDGS 49


>tr|A5BRC3|A5BRC3_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_027576 PE=4 SV=1
          Length = 1172

 Score = 40.0 bits (92), Expect = 0.058
 Identities = 37/83 (44%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
 Frame = +3

Query: 171 ILVPGLKKNLISVSKL-TDNGIIIKFHARRLPHFALNKDGQY-VTLLVPKT-GRLYPLGD 341
           + VPG+KKNLIS+SKL   N + I F    LP   L KD +   TLL  KT   +Y    
Sbjct: 293 LCVPGMKKNLISISKLXISNNVSITF----LPSSFLVKDLRTGATLLKGKTKDGVYEWLV 348

Query: 342 SSPAHASASSIKTQENTFKWHYR 410
           SSP  A  SS+KT  +  +WH+R
Sbjct: 349 SSPLLA-FSSVKTSSS--EWHHR 368


>tr|A5C7A6|A5C7A6_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_040762 PE=4 SV=1
          Length = 590

 Score = 39.3 bits (90), Expect = 0.100
 Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
 Frame = +3

Query: 171 ILVPGLKKNLISVSKLT-DNGIIIKFHARRLPHFALNKDGQYVTLLV--PKTGRLYPLGD 341
           + VP + KNLISV   T  N +I++FH    P + L KD +   +L+  P    +YP+  
Sbjct: 357 LCVPTINKNLISVHHFTKQNNVILEFH----PTYFLVKDRRTGEILLQGPCENGVYPM-P 411

Query: 342 SSPAHASASSIKTQENTFKWHYR 410
           SSPA    + +  + +   WH R
Sbjct: 412 SSPAATPIAFVHERTSVTGWHQR 434


>tr|A5B7U3|A5B7U3_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_031906 PE=4 SV=1
          Length = 1162

 Score = 38.9 bits (89), Expect = 0.13
 Identities = 25/77 (32%), Positives = 33/77 (42%)
 Frame = +3

Query: 180 PGLKKNLISVSKLTDNGIIIKFHARRLPHFALNKDGQYVTLLVPKTGRLYPLGDSSPAHA 359
           PGL  NLISV +L DN   + F               +   L PK G+L+PL  S P+  
Sbjct: 365 PGLSANLISVGQLVDNNCNVSF--------------SHGGCLGPKVGQLFPLQFSIPSAL 410

Query: 360 SASSIKTQENTFKWHYR 410
           S +       +  WH R
Sbjct: 411 SLACSTVSNQSEVWHKR 427