| Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BP914048|Adiantum capillus-veneris mRNA, clone:
YMU001_000039_C08.
(503 letters)
Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q66KE3|CPSF4_XENTR Cleavage and polyadenylation specificity f... 35 0.20
sp|O94264|YORF_SCHPO Uncharacterized RING finger protein P8B7.15... 35 0.26
sp|Q4P384|YTH1_USTMA mRNA 3'-end-processing protein YTH1 OS=Usti... 34 0.44
sp|Q99KK1|REEP3_MOUSE Receptor expression-enhancing protein 3 OS... 33 0.98
sp|Q6NUK4|REEP3_HUMAN Receptor expression-enhancing protein 3 OS... 32 2.2
sp|Q9JKS6|PCLO_RAT Protein piccolo OS=Rattus norvegicus GN=Pclo ... 32 2.2
sp|Q9BRK0|REEP2_HUMAN Receptor expression-enhancing protein 2 OS... 31 2.9
sp|Q4KMI4|REEP2_DANRE Receptor expression-enhancing protein 2 OS... 31 2.9
sp|Q2KI30|REEP2_BOVIN Receptor expression-enhancing protein 2 OS... 31 2.9
sp|Q6C7C0|MYO1_YARLI Myosin-1 OS=Yarrowia lipolytica GN=MYO1 PE=... 31 2.9
sp|Q8NIW7|BBP_NEUCR Branchpoint-bridging protein OS=Neurospora c... 31 2.9
sp|Q8VCD6|REEP2_MOUSE Receptor expression-enhancing protein 2 OS... 31 3.7
sp|Q4WXV6|BBP_ASPFU Branchpoint-bridging protein OS=Aspergillus ... 31 3.7
sp|O74555|BBP_SCHPO Branchpoint-bridging protein OS=Schizosaccha... 30 4.9
sp|Q8R550|SH3K1_MOUSE SH3 domain-containing kinase-binding prote... 30 6.4
sp|Q96B97|SH3K1_HUMAN SH3 domain-containing kinase-binding prote... 30 6.4
sp|A5GEV5|MUTL_GEOUR DNA mismatch repair protein mutL OS=Geobact... 30 6.4
sp|Q9PWR1|KCAB1_CHICK Voltage-gated potassium channel subunit be... 30 6.4
sp|P33458|GAG_CAEVC Gag polyprotein OS=Caprine arthritis encepha... 30 6.4
sp|A6Q4S3|CRCB_NITSB Protein crcB homolog OS=Nitratiruptor sp. (... 30 6.4
sp|Q6DJP7|CPSF4_XENLA Cleavage and polyadenylation specificity f... 30 6.4
sp|P62634|CNBP_RAT Cellular nucleic acid-binding protein OS=Ratt... 30 6.4
sp|Q5R5R5|CNBP_PONAB Cellular nucleic acid-binding protein OS=Po... 30 6.4
sp|P53996|CNBP_MOUSE Cellular nucleic acid-binding protein OS=Mu... 30 6.4
sp|P62633|CNBP_HUMAN Cellular nucleic acid-binding protein OS=Ho... 30 6.4
sp|O42395|CNBP_CHICK Cellular nucleic acid-binding protein OS=Ga... 30 6.4
sp|Q3T0Q6|CNBP_BOVIN Cellular nucleic acid-binding protein OS=Bo... 30 6.4
sp|Q925Q9|SH3K1_RAT SH3 domain-containing kinase-binding protein... 30 8.3
sp|Q7ZVX5|REEP3_DANRE Receptor expression-enhancing protein 3 OS... 30 8.3
sp|Q80T03|MUC6_MOUSE Mucin-6 OS=Mus musculus GN=Muc6 PE=2 SV=1 30 8.3
>sp|Q66KE3|CPSF4_XENTR Cleavage and polyadenylation specificity
factor subunit 4 OS=Xenopus tropicalis GN=cpsf4 PE=2
SV=1
Length = 269
Score = 35.0 bits (79), Expect = 0.20
Identities = 30/95 (31%), Positives = 40/95 (42%), Gaps = 9/95 (9%)
Frame = +2
Query: 170 GGMEPPPLAQPTARVVAGTGETDQGSSQQELLQ------QITNQLEGLSINLAQ---GVR 322
G E PPL Q T +T Q + ++LQ Q+T+Q +S + GV
Sbjct: 174 GTTEQPPLPQQT--------QTQQKQNNNQVLQRSSSLIQLTSQNSPVSQQRSPQTIGVM 225
Query: 323 AP*PGNERNRQEVQRQTREYVCYNCGEVGHGMYYC 427
GN+ NR R + CY CGE GH C
Sbjct: 226 QSQSGNQGNRGP--RPLDQVTCYKCGEKGHYANRC 258
>sp|O94264|YORF_SCHPO Uncharacterized RING finger protein P8B7.15c
OS=Schizosaccharomyces pombe GN=SPBP8B7.15c PE=2 SV=1
Length = 482
Score = 34.7 bits (78), Expect = 0.26
Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 8/91 (8%)
Frame = +2
Query: 182 PPPLAQPTARVVAGTGETDQGSSQ------QELLQQITNQLEGLSINLAQGVRAP*PGNE 343
P P+ Q A + +G ++ S Q++ Q ++Q +A P
Sbjct: 109 PVPMLQKKAPITSGESNINKSPSSSEDAAIQQMFQVSSDQWRETQDKMASATPIYKPNQR 168
Query: 344 RNRQEVQRQTRE--YVCYNCGEVGHGMYYCP 430
R V + Y+CY CG+ GH + CP
Sbjct: 169 RIAASVPDKPPPPGYICYRCGQKGHWIQACP 199
>sp|Q4P384|YTH1_USTMA mRNA 3'-end-processing protein YTH1
OS=Ustilago maydis GN=YTH1 PE=3 SV=1
Length = 366
Score = 33.9 bits (76), Expect = 0.44
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Frame = +2
Query: 200 PTARVVAGTGETDQGSSQQEL-----LQQITNQLEGLSINLAQGVRAP*PGNERNRQEVQ 364
P+ G G D G+S+ + +Q+ N + G AP G + + +
Sbjct: 266 PSGGAAGGAGAADIGASRGGMGYANNMQRRPNNVFG----------APAQGAQEGGRGWR 315
Query: 365 RQTREYVCYNCGEVGHGMYYCPH 433
+ E +C+ CGE+GH CP+
Sbjct: 316 KDLSEVLCFKCGEMGHFANMCPN 338
>sp|Q99KK1|REEP3_MOUSE Receptor expression-enhancing protein 3
OS=Mus musculus GN=Reep3 PE=1 SV=1
Length = 254
Score = 32.7 bits (73), Expect = 0.98
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -2
Query: 409 TYLSTIVANVLTGLPLYF-LSISFISWLGSPYT 314
T + T+ L PLY+ L I+F+ WL SPYT
Sbjct: 49 TVIETVADQTLAWFPLYYELKIAFVIWLLSPYT 81
>sp|Q6NUK4|REEP3_HUMAN Receptor expression-enhancing protein 3
OS=Homo sapiens GN=REEP3 PE=2 SV=1
Length = 255
Score = 31.6 bits (70), Expect = 2.2
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -2
Query: 409 TYLSTIVANVLTGLPLYF-LSISFISWLGSPYT 314
T + T+ + PLY+ L I+F+ WL SPYT
Sbjct: 49 TVIETVADQTVAWFPLYYELKIAFVIWLLSPYT 81
>sp|Q9JKS6|PCLO_RAT Protein piccolo OS=Rattus norvegicus GN=Pclo
PE=1 SV=1
Length = 5085
Score = 31.6 bits (70), Expect = 2.2
Identities = 22/89 (24%), Positives = 42/89 (47%)
Frame = +2
Query: 107 EKAMNYATEKDRILNFQAELQGGMEPPPLAQPTARVVAGTGETDQGSSQQELLQQITNQL 286
E + T+K +++ + GM PPL QP+ + + Q +E++QQ ++
Sbjct: 179 EASQEETTKKQKVVQKEQGKSEGMAKPPLQQPSPKPI-----PKQQGQVKEVIQQDSSP- 232
Query: 287 EGLSINLAQGVRAP*PGNERNRQEVQRQT 373
+ +S A+ V+ PG + Q+ QT
Sbjct: 233 KSVSSQQAEKVKPQAPGTGKPSQQSPAQT 261
>sp|Q9BRK0|REEP2_HUMAN Receptor expression-enhancing protein 2
OS=Homo sapiens GN=REEP2 PE=2 SV=2
Length = 252
Score = 31.2 bits (69), Expect = 2.9
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -2
Query: 409 TYLSTIVANVLTGLPLYF-LSISFISWLGSPYT 314
T T+ VL+ P YF L I+F+ WL SPYT
Sbjct: 49 TTAETLTDIVLSWFPFYFELKIAFVIWLLSPYT 81
>sp|Q4KMI4|REEP2_DANRE Receptor expression-enhancing protein 2
OS=Danio rerio GN=reep2 PE=2 SV=1
Length = 268
Score = 31.2 bits (69), Expect = 2.9
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -2
Query: 409 TYLSTIVANVLTGLPLYF-LSISFISWLGSPYT 314
T TI +L+ P YF L I+F+ WL SPYT
Sbjct: 49 TTAETITDMLLSWFPFYFELKIAFVIWLLSPYT 81
>sp|Q2KI30|REEP2_BOVIN Receptor expression-enhancing protein 2
OS=Bos taurus GN=REEP2 PE=2 SV=1
Length = 254
Score = 31.2 bits (69), Expect = 2.9
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -2
Query: 409 TYLSTIVANVLTGLPLYF-LSISFISWLGSPYT 314
T T+ VL+ P YF L I+F+ WL SPYT
Sbjct: 49 TTAETLTDIVLSWFPFYFELKIAFVIWLLSPYT 81
>sp|Q6C7C0|MYO1_YARLI Myosin-1 OS=Yarrowia lipolytica GN=MYO1 PE=3
SV=1
Length = 1228
Score = 31.2 bits (69), Expect = 2.9
Identities = 19/55 (34%), Positives = 26/55 (47%)
Frame = +2
Query: 161 ELQGGMEPPPLAQPTARVVAGTGETDQGSSQQELLQQITNQLEGLSINLAQGVRA 325
E+QGG PP A PTA G G+S E L+Q + L +A ++A
Sbjct: 1167 EVQGGAAAPPPAAPTA------GGASAGASLAEALKQKQQSNQTLGAGIADAIKA 1215
|
| Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BP914048|Adiantum capillus-veneris mRNA, clone:
YMU001_000039_C08.
(503 letters)
Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tr|A5JSC4|A5JSC4_MAIZE Polyprotein OS=Zea mays PE=4 SV=1 44 0.004
tr|B4FMK6|B4FMK6_MAIZE Putative uncharacterized protein OS=Zea m... 44 0.006
tr|Q6AU37|Q6AU37_ORYSJ Putative retrotransposon protein (Retrotr... 40 0.062
tr|B0X7W5|B0X7W5_CULQU Putative uncharacterized protein OS=Culex... 40 0.062
tr|Q6F2X4|Q6F2X4_ORYSJ Putative uncharacterized protein OSJNBa00... 39 0.11
tr|Q60DI2|Q60DI2_ORYSJ Putative polyprotein OS=Oryza sativa subs... 39 0.11
tr|Q2RB45|Q2RB45_ORYSJ Retrotransposon protein, putative, Ty3-gy... 39 0.14
tr|Q7XX43|Q7XX43_ORYSJ OSJNBa0059D20.6 protein OS=Oryza sativa s... 39 0.18
tr|Q75HH6|Q75HH6_ORYSJ Putative polyprotein (Retrotransposon pro... 39 0.18
tr|Q2QUX2|Q2QUX2_ORYSJ Retrotransposon protein, putative, Ty3-gy... 39 0.18
tr|Q7XLQ8|Q7XLQ8_ORYSJ OSJNBb0093G06.13 protein (OSJNBa0042F21.2... 38 0.24
tr|Q7XWL9|Q7XWL9_ORYSJ OSJNBb0052B05.10 protein OS=Oryza sativa ... 38 0.31
tr|Q65WZ3|Q65WZ3_ORYSJ Putative polyprotein OS=Oryza sativa subs... 38 0.31
tr|Q53KQ8|Q53KQ8_ORYSJ Retrotransposon protein, putative, Ty3-gy... 38 0.31
tr|Q22A24|Q22A24_TETTH Putative uncharacterized protein OS=Tetra... 38 0.31
tr|Q8RV09|Q8RV09_ORYSJ Putative polyprotein (Retrotransposon pro... 37 0.40
tr|Q6F2X5|Q6F2X5_ORYSJ Putative polyprotein OS=Oryza sativa subs... 37 0.40
tr|Q60DI3|Q60DI3_ORYSJ Putative polyprotein OS=Oryza sativa subs... 37 0.40
tr|Q5WML8|Q5WML8_ORYSJ Putative polyprotein OS=Oryza sativa subs... 37 0.40
tr|Q53KI9|Q53KI9_ORYSJ Retrotransposon protein, putative, Ty3-gy... 37 0.40
tr|Q2R8H2|Q2R8H2_ORYSJ Retrotransposon protein, putative, Ty3-gy... 37 0.40
tr|Q2QLW8|Q2QLW8_ORYSJ Retrotransposon protein, putative, Ty3-gy... 37 0.40
tr|B8A6E8|B8A6E8_DANRE Novel protein similar to vertebrate leuci... 37 0.53
tr|Q850T1|Q850T1_ORYSJ Putative gag-pol polyprotein OS=Oryza sat... 37 0.53
tr|Q60DH8|Q60DH8_ORYSJ Putative polyprotein OS=Oryza sativa subs... 37 0.53
tr|Q2QR37|Q2QR37_ORYSJ Retrotransposon protein, putative, Ty3-gy... 37 0.53
tr|Q10FR2|Q10FR2_ORYSJ Retrotransposon protein, putative, Ty3-gy... 37 0.53
tr|Q109X8|Q109X8_ORYSJ Retrotransposon protein, putative, Ty3-gy... 37 0.53
tr|Q01MY8|Q01MY8_ORYSA OSIGBa0160I04.3 protein OS=Oryza sativa G... 37 0.53
tr|B6KXH9|B6KXH9_BRAFL Putative uncharacterized protein OS=Branc... 37 0.53
>tr|A5JSC4|A5JSC4_MAIZE Polyprotein OS=Zea mays PE=4 SV=1
Length = 1476
Score = 43.9 bits (102), Expect = 0.004
Identities = 38/137 (27%), Positives = 61/137 (44%), Gaps = 4/137 (2%)
Frame = +2
Query: 32 KKDCFLAGLYPILREKVKGKFPDTFEKAMNYA-TEKDRILNFQAELQGGMEPPPLAQPTA 208
K+D F GL LRE++ D+F + +N A +++D I+ +AE + P+A P+A
Sbjct: 193 KRDRFRRGLNTKLRERLNTVRADSFNELVNMAISQEDCIVAHRAEKK---RKAPMAAPSA 249
Query: 209 RVVAG--TGETDQGSSQQELLQQITNQLEGLSINLAQGVRAP*PGNERNRQEVQ-RQTRE 379
+ QQ+ + + + AP P N + +Q+ Q RQ
Sbjct: 250 QAQRFWIVSHNQSRGFQQQAGRWVIRPPQQQQQPAPNRYPAPAPRNNQPQQQQQFRQGNG 309
Query: 380 YVCYNCGEVGHGMYYCP 430
C+ CG VGH CP
Sbjct: 310 NKCFTCGNVGHYAKNCP 326
>tr|B4FMK6|B4FMK6_MAIZE Putative uncharacterized protein OS=Zea mays
PE=2 SV=1
Length = 441
Score = 43.5 bits (101), Expect = 0.006
Identities = 38/140 (27%), Positives = 65/140 (46%), Gaps = 7/140 (5%)
Frame = +2
Query: 32 KKDCFLAGLYPILREKVKGKFPDTFEKAMNYA-TEKDRILNFQAELQGGMEPPPLAQPTA 208
K+D F GL LR+++ +++ + +N A +++D I QAE + P+A P+A
Sbjct: 192 KRDRFRRGLSTKLRDRLNTVRANSYNELVNMAISQEDCITARQAEKK---RKTPVAGPSA 248
Query: 209 -----RVVAGT-GETDQGSSQQELLQQITNQLEGLSINLAQGVRAP*PGNERNRQEVQRQ 370
R+V+ T G Q + +++ Q + + N Q P N+Q+ RQ
Sbjct: 249 QPQRFRIVSDTQGRGPQQQQGRWVIRPQQQQQQQQAPNRNQF-----PAQRNNQQQQYRQ 303
Query: 371 TREYVCYNCGEVGHGMYYCP 430
+ C+ CG GH CP
Sbjct: 304 ANDNRCFTCGNTGHYAKNCP 323
>tr|Q6AU37|Q6AU37_ORYSJ Putative retrotransposon protein
(Retrotransposon protein, putative, unclassified)
OS=Oryza sativa subsp. japonica GN=OSJNBb0096H12.2 PE=4
SV=1
Length = 626
Score = 40.0 bits (92), Expect = 0.062
Identities = 38/145 (26%), Positives = 53/145 (36%), Gaps = 3/145 (2%)
Frame = +2
Query: 8 GERVSECLKKDCFLAGLYPILREKVKGKFPDTFEKAMNYAT--EKDR-ILNFQAELQGGM 178
G+ E K D F+ GL LR + G+ D+F+ +N E DR ++ + + M
Sbjct: 171 GDLADEEEKIDKFIEGLNDELRGPMIGQDHDSFQSLINKVVRLENDRKVVEHNRKRRLAM 230
Query: 179 EPPPLAQPTARVVAGTGETDQGSSQQELLQQITNQLEGLSINLAQGVRAP*PGNERNRQE 358
PP P G T G + + +AP P Q
Sbjct: 231 NRPPQVAPQCP----KGTTSSGWRPTVVTTNRPTAPSNFHRLVTTQTQAPTPN-----QA 281
Query: 359 VQRQTREYVCYNCGEVGHGMYYCPH 433
R C+NCGE GH CPH
Sbjct: 282 ATGSVRPGSCFNCGEYGHFANKCPH 306
Score = 33.5 bits (75), Expect = 5.8
Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 12/125 (9%)
Frame = +2
Query: 92 FPDTFEKAMNYATEKDRILN-------FQAELQGG-----MEPPPLAQPTARVVAGTGET 235
F +KA+ +K+RI N FQ E QG ++P + +P++ AG G++
Sbjct: 467 FQQLVDKAIRLEDKKNRIDNRKRKMTVFQ-EAQGSSQRQRIKPLQIGEPSS---AGQGQS 522
Query: 236 DQGSSQQELLQQITNQLEGLSINLAQGVRAP*PGNERNRQEVQRQTREYVCYNCGEVGHG 415
Q + E+ + TN E +N+ Q + +++++ + VC+NC + GH
Sbjct: 523 QQLNIGGEIKSE-TN--ESNKVNIEQANQPVLVQQDQSQENNSSGREQQVCFNCYKPGHF 579
Query: 416 MYYCP 430
CP
Sbjct: 580 ARECP 584
>tr|B0X7W5|B0X7W5_CULQU Putative uncharacterized protein OS=Culex
quinquefasciatus GN=CpipJ_CPIJ014607 PE=4 SV=1
Length = 178
Score = 40.0 bits (92), Expect = 0.062
Identities = 39/141 (27%), Positives = 58/141 (41%), Gaps = 1/141 (0%)
Frame = +2
Query: 8 GERVSECLKKDCFLAGLYP-ILREKVKGKFPDTFEKAMNYATEKDRILNFQAELQGGMEP 184
G +S+ L+ D F+ G+Y LR+K+ +F TF+KA + A + LN E+ E
Sbjct: 11 GTFLSDALR-DQFVVGVYDESLRKKLLTEFGLTFDKACSIARSYEAALNQNKEMSSQSEV 69
Query: 185 PPLAQPTARVVAGTGETDQGSSQQELLQQITNQLEGLSINLAQGVRAP*PGNERNRQEVQ 364
ARV +G+ G + E Q++N G R+
Sbjct: 70 R-----FARVQKVSGQQSTGGRRGE--GQVSNSRFGPCFRCG-----------RHHNPAT 111
Query: 365 RQTREYVCYNCGEVGHGMYYC 427
R + CY CG GH YC
Sbjct: 112 CPARGWKCYTCGRKGHISTYC 132
>tr|Q6F2X4|Q6F2X4_ORYSJ Putative uncharacterized protein
OSJNBa0038E22.17 OS=Oryza sativa subsp. japonica
GN=OSJNBa0038E22.17 PE=4 SV=1
Length = 917
Score = 39.3 bits (90), Expect = 0.11
Identities = 42/153 (27%), Positives = 60/153 (39%), Gaps = 20/153 (13%)
Frame = +2
Query: 32 KKDCFLAGLYPILREK-VKGKFPDTFE----------KAMNYATEKDRILNFQ----AEL 166
K++ FLAG+ P L + V G +PD K + K R+ NF+ A
Sbjct: 454 KQEKFLAGMDPELSVRLVSGDYPDFQHLVDKSIRLEAKHKERESHKRRLANFRNQQGANQ 513
Query: 167 QGGMEPPPLAQPTARVVAGTGETDQGSSQQELLQQITNQLEGLSINLAQGVRAP*PGN-- 340
+ + P + P + V + Q SQQ G RAP P
Sbjct: 514 RQQQQQQPRSAPRPQFVVRVPQPQQQQSQQ-------------------GTRAPRPPTPA 554
Query: 341 ---ERNRQEVQRQTREYVCYNCGEVGHGMYYCP 430
+ R++VQ Q R +C+NC E GH CP
Sbjct: 555 VQPSQGRRDVQGQQR--LCFNCFEPGHFADKCP 585
>tr|Q60DI2|Q60DI2_ORYSJ Putative polyprotein OS=Oryza sativa subsp.
japonica GN=OSJNBa0093C16.2 PE=4 SV=1
Length = 1611
Score = 39.3 bits (90), Expect = 0.11
Identities = 42/153 (27%), Positives = 60/153 (39%), Gaps = 20/153 (13%)
Frame = +2
Query: 32 KKDCFLAGLYPILREK-VKGKFPDTFE----------KAMNYATEKDRILNFQ----AEL 166
K++ FLAG+ P L + V G +PD K + K R+ NF+ A
Sbjct: 454 KQEKFLAGMDPELSVRLVSGDYPDFQHLVDKSIRLEAKHKERESHKRRLANFRNQQGANQ 513
Query: 167 QGGMEPPPLAQPTARVVAGTGETDQGSSQQELLQQITNQLEGLSINLAQGVRAP*PGN-- 340
+ + P + P + V + Q SQQ G RAP P
Sbjct: 514 RQQQQQQPRSAPRPQFVVRVPQPQQQQSQQ-------------------GTRAPRPPTPA 554
Query: 341 ---ERNRQEVQRQTREYVCYNCGEVGHGMYYCP 430
+ R++VQ Q R +C+NC E GH CP
Sbjct: 555 VQPSQGRRDVQGQQR--LCFNCFEPGHFADKCP 585
>tr|Q2RB45|Q2RB45_ORYSJ Retrotransposon protein, putative, Ty3-gypsy
subclass OS=Oryza sativa subsp. japonica
GN=LOC_Os11g03250 PE=4 SV=1
Length = 1284
Score = 38.9 bits (89), Expect = 0.14
Identities = 40/140 (28%), Positives = 56/140 (40%), Gaps = 8/140 (5%)
Frame = +2
Query: 38 DCFLAGLYPILREKVKGKFPDTFEKAMNYAT--EKDR-ILNFQAELQGGMEPPPLAQPTA 208
D F+ GL LR + G+ D+F+ +N E DR I+ + + M PP P
Sbjct: 181 DKFIEGLNDELRGPMIGQDHDSFQSLINKVVRLENDRKIVEHNRKRRLAMNRPPQTAP-- 238
Query: 209 RVVAGTGETDQGSSQQELLQQI-TNQLEGLSINLAQGV----RAP*PGNERNRQEVQRQT 373
+ +G++ + T S NL + V RAP P Q
Sbjct: 239 -------QRPKGATSSAWRPTVVTTSRPAASGNLHRPVTIQNRAPAPN-----QAATGPV 286
Query: 374 REYVCYNCGEVGHGMYYCPH 433
R C+NCGE GH CPH
Sbjct: 287 RPGSCFNCGEYGHFANKCPH 306
>tr|Q7XX43|Q7XX43_ORYSJ OSJNBa0059D20.6 protein OS=Oryza sativa
subsp. japonica GN=OSJNBa0059D20.6 PE=4 SV=2
Length = 1470
Score = 38.5 bits (88), Expect = 0.18
Identities = 39/142 (27%), Positives = 56/142 (39%), Gaps = 8/142 (5%)
Frame = +2
Query: 32 KKDCFLAGLYPILREKVKGKFPDTFEKAMNYAT--EKDR-ILNFQAELQGGMEPPPLAQP 202
K D F+ GL LR + G+ D+F+ +N E DR ++ + + M PP P
Sbjct: 179 KIDKFIEGLNDELRGPMIGQDHDSFQSLINKVVRLENDRKVVEHNRKRRLAMNRPPQTAP 238
Query: 203 TARVVAGTGETDQGSSQQELLQQI-TNQLEGLSINLAQGV----RAP*PGNERNRQEVQR 367
+ +G++ + T S N + V RAP P Q
Sbjct: 239 ---------QRPKGTTPSAWRPTVVTTSRPAASSNFHRPVTIQNRAPTPN-----QAATG 284
Query: 368 QTREYVCYNCGEVGHGMYYCPH 433
R C+NCGE GH CPH
Sbjct: 285 SVRPGSCFNCGEYGHFANKCPH 306
>tr|Q75HH6|Q75HH6_ORYSJ Putative polyprotein (Retrotransposon
protein, putative, Ty3-gypsy subclass) OS=Oryza sativa
subsp. japonica GN=OSJNBa0024F18.30 PE=4 SV=1
Length = 1312
Score = 38.5 bits (88), Expect = 0.18
Identities = 39/144 (27%), Positives = 57/144 (39%), Gaps = 10/144 (6%)
Frame = +2
Query: 32 KKDCFLAGLYPILREKVKGKFPDTFEKAMNYAT--EKDR-ILNFQAELQGGMEPPPLAQP 202
K D F+ GL LR + G+ D+F+ +N E DR ++ + + M P P
Sbjct: 179 KIDKFIEGLNDELRGPMIGQDHDSFQSLINKVVRLENDRKVVEHNRKRRLAMNRLPQVAP 238
Query: 203 TARVVAGTGE-------TDQGSSQQELLQQITNQLEGLSINLAQGVRAP*PGNERNRQEV 361
A + E T++ ++ L+ +T Q RAP P Q
Sbjct: 239 QRPKGATSSEWKPTVVTTNRPATSSNFLRPVTIQN-----------RAPAP-----HQAT 282
Query: 362 QRQTREYVCYNCGEVGHGMYYCPH 433
R C+NCGE GH CPH
Sbjct: 283 TGSVRPGSCFNCGEYGHFANKCPH 306
>tr|Q2QUX2|Q2QUX2_ORYSJ Retrotransposon protein, putative, Ty3-gypsy
subclass OS=Oryza sativa subsp. japonica
GN=LOC_Os12g14800 PE=4 SV=2
Length = 1727
Score = 38.5 bits (88), Expect = 0.18
Identities = 37/150 (24%), Positives = 62/150 (41%), Gaps = 17/150 (11%)
Frame = +2
Query: 32 KKDCFLAGLYPILREK-VKGKFPDTFEKAMNYA-----------TEKDRILNFQAEL--- 166
K++ FLAG+ P L + V G +PD F++ ++ + + K R+ NF+ +
Sbjct: 527 KQEKFLAGIDPELSVRLVSGDYPD-FQRLVDKSLRLEAKHKELESHKRRLANFRNQQGAN 585
Query: 167 --QGGMEPPPLAQPTARVVAGTGETDQGSSQQELLQQITNQLEGLSINLAQGVRAP*PGN 340
Q +P P + P + V + Q SQQ + R P P
Sbjct: 586 QRQQQQQPQPRSAPRPQFVVRVPQPQQQQSQQG----------------TRVPRPPMPDG 629
Query: 341 ERNRQEVQRQTREYVCYNCGEVGHGMYYCP 430
+ ++ Q + +C+NC E GH CP
Sbjct: 630 QPSQGHRDAQGPQRLCFNCFEPGHFADKCP 659
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