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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914050
Clone id YMU001_000039_C10
Library
Length 313
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000039_C10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GGTATGGTGAAACTGGAATGTGGCATGTTGGTCGCGACGCTTGGGCGTGAAGTGAACATA
AAGGATGTGAGTCGGGTGGGAGTGGTCATTGAAGTGCGAGGCTCAGCAAAGCATATACTG
GCAGTAATGCACGGTGATTGGGTCATGGCATGGGTCAGGGAGATCCGGATGGGAATGTCT
CCGAAGTGGCCTTATAGGCTGAATGCGAGTGAAAAGCTGGCTGAAGTAAAGCCAGCAGGA
TCAGTCAACGCGGGGTTACATTTTGGCTGCGAAGAGCAGGTCCTAGTAAGGACACACAGG
CATGGGGCTGGAG
■■Homology search results ■■ -
sp_hit_id Q02505
Definition sp|Q02505|MUC3A_HUMAN Mucin-3A OS=Homo sapiens
Align length 62
Score (bit) 32.3
E-value 0.75
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914050|Adiantum capillus-veneris mRNA, clone:
YMU001_000039_C10.
         (313 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q02505|MUC3A_HUMAN Mucin-3A OS=Homo sapiens GN=MUC3A PE=2 SV=2      32   0.75 
sp|Q02959|HOS3_YEAST Histone deacetylase HOS3 OS=Saccharomyces c...    30   3.7  
sp|Q9Y7X8|YGRA_SCHPO Uncharacterized actin family protein C365.1...    29   6.4  

>sp|Q02505|MUC3A_HUMAN Mucin-3A OS=Homo sapiens GN=MUC3A PE=2 SV=2
          Length = 2541

 Score = 32.3 bits (72), Expect = 0.75
 Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 10/62 (16%)
 Frame = -3

Query: 161 SLTHAMTQSPCITASICFAEPRTSMTTPTR----------LTSFMFTSRPSVATNMPHSS 12
           SLT AMT +P IT+SI   +  TSM T T           LTS + +S P  +T +  S 
Sbjct: 724 SLTTAMTSTPPITSSITPTDTMTSMRTTTSWPTATNTLSPLTSSILSSTPVPSTEVTTSH 783

Query: 11  FT 6
            T
Sbjct: 784 TT 785


>sp|Q02959|HOS3_YEAST Histone deacetylase HOS3 OS=Saccharomyces
           cerevisiae GN=HOS3 PE=1 SV=1
          Length = 697

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
 Frame = +1

Query: 100 GSAKHILAVMHGDWVMAW-----VREIRMGMSPKW-PYRLNASEKLAEV 228
           G   H++ + + DWV  W     V+EI  G  P W PY+   ++ +  +
Sbjct: 426 GVFAHLIGLQNQDWVKEWGSEQVVKEIVRGCKPAWKPYKTKRAKDVIRI 474


>sp|Q9Y7X8|YGRA_SCHPO Uncharacterized actin family protein C365.10
           OS=Schizosaccharomyces pombe GN=SPBC365.10 PE=2 SV=1
          Length = 721

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 15/54 (27%), Positives = 30/54 (55%)
 Frame = +1

Query: 70  SRVGVVIEVRGSAKHILAVMHGDWVMAWVREIRMGMSPKWPYRLNASEKLAEVK 231
           S  G+V+ +  +A H++ V++G+ +++  + I  G S    Y L    KL ++K
Sbjct: 164 SSSGIVLNLGNAASHVIPVLNGERILSEAKRISWGGSQSSSYLL----KLFQIK 213
tr_hit_id B4PEV8
Definition tr|B4PEV8|B4PEV8_DROYA GE20844 OS=Drosophila yakuba
Align length 66
Score (bit) 37.0
E-value 0.49
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914050|Adiantum capillus-veneris mRNA, clone:
YMU001_000039_C10.
         (313 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4PEV8|B4PEV8_DROYA GE20844 OS=Drosophila yakuba GN=GE20844 P...    37   0.49 
tr|B3NCH2|B3NCH2_DROER GG15381 OS=Drosophila erecta GN=GG15381 P...    34   4.2  
tr|Q897X4|Q897X4_CLOTE Glycerol dehydrogenase OS=Clostridium tet...    33   5.5  
tr|A6T1B9|A6T1B9_JANMA Transcriptional regulator, LysR family OS...    33   7.1  
tr|Q0HF16|Q0HF16_SHESM Sensor protein OS=Shewanella sp. (strain ...    33   7.2  
tr|Q1QTA5|Q1QTA5_CHRSD Putative uncharacterized protein OS=Chrom...    33   9.3  
tr|B4QN72|B4QN72_DROSI GD14186 OS=Drosophila simulans GN=GD14186...    33   9.3  

>tr|B4PEV8|B4PEV8_DROYA GE20844 OS=Drosophila yakuba GN=GE20844 PE=4
           SV=1
          Length = 775

 Score = 37.0 bits (84), Expect = 0.49
 Identities = 22/66 (33%), Positives = 28/66 (42%)
 Frame = -2

Query: 204 IQPIRPLRRHSHPDLPDPCHDPITVHYCQYMLC*ASHFNDHSHPTHILYVHFTPKRRDQH 25
           +QP  P R  SHP LP P H P + H   +        + H HP H  Y H  P  +  H
Sbjct: 659 LQPGTPTRS-SHPQLPHPHHYPPSPHSHPHH---QPGHHGHPHPHHFAYAHGHPHPQQHH 714

Query: 24  ATFQFH 7
             +  H
Sbjct: 715 PHYYPH 720


>tr|B3NCH2|B3NCH2_DROER GG15381 OS=Drosophila erecta GN=GG15381 PE=4
           SV=1
          Length = 772

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 21/66 (31%), Positives = 27/66 (40%)
 Frame = -2

Query: 204 IQPIRPLRRHSHPDLPDPCHDPITVHYCQYMLC*ASHFNDHSHPTHILYVHFTPKRRDQH 25
           +QP  P R  SHP LP P H P + H   +        + H H  H  Y H  P  +  H
Sbjct: 656 LQPGTPTRS-SHPQLPHPHHYPPSPHSHPHH---QPGHHGHPHAHHFAYAHGHPHPQQHH 711

Query: 24  ATFQFH 7
             +  H
Sbjct: 712 PHYYPH 717


>tr|Q897X4|Q897X4_CLOTE Glycerol dehydrogenase OS=Clostridium tetani
           GN=CTC_00596 PE=4 SV=1
          Length = 366

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -3

Query: 191 GHFGDIPIRISLTHAMTQSPCITASICFAE 102
           GHFG++PI I  T A T +PC   S+ + E
Sbjct: 104 GHFGNLPIVIIPTVAATDAPCTALSVLYTE 133


>tr|A6T1B9|A6T1B9_JANMA Transcriptional regulator, LysR family
           OS=Janthinobacterium sp. (strain Marseille)
           (Minibacterium massiliensis) GN=mma_2626 PE=4 SV=1
          Length = 299

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = +1

Query: 88  IEVRGSAKHILAVMHGDWVMAWVREIRMGMSPKWPYRLNASEKLAEVKPAGSVN 249
           IE RG  K I  + H D +   +RE     +P+W +R N  E++  + P   VN
Sbjct: 170 IERRGEPKSIADIAHHDVIFTAIRE----KAPEWRFRHNGREQIVALTPRLIVN 219


>tr|Q0HF16|Q0HF16_SHESM Sensor protein OS=Shewanella sp. (strain MR-4)
            GN=Shewmr4_3284 PE=4 SV=1
          Length = 1168

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = -3

Query: 158  LTHAMTQSPCITASICFAEPRTSMTTPTRLTSFMFTSRPSVAT 30
            LTH +  S C T  IC A+P  S+   T    F F  +P  AT
Sbjct: 1116 LTHPVFSSQCPTCIICSADPSESVRQHTSSALFSFVRKPVKAT 1158


>tr|Q1QTA5|Q1QTA5_CHRSD Putative uncharacterized protein
           OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC
           BAA-138 / NCIMB 13768) GN=Csal_2958 PE=4 SV=1
          Length = 743

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 11/86 (12%)
 Frame = +1

Query: 82  VVIEVRGSAKHILA---VMHGDWVMA----WVREIRMGMSPKWPYR---LNASEKLAEVK 231
           VV+  R    H+LA     HG W  A    W R +R+ + P    R       E +AE  
Sbjct: 492 VVLGERRPRGHLLAQSLAAHGGWQAALTSRWWRIMRIAVHPATRRRGIGRALVEAVAEAA 551

Query: 232 PAGSVNA-GLHFGCEEQVLVRTHRHG 306
           PA  ++  G+ FG E  ++   HR G
Sbjct: 552 PAAGIDRLGVSFGAEASLIAFWHRQG 577


>tr|B4QN72|B4QN72_DROSI GD14186 OS=Drosophila simulans GN=GD14186
           PE=4 SV=1
          Length = 707

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 22/66 (33%), Positives = 28/66 (42%)
 Frame = -2

Query: 204 IQPIRPLRRHSHPDLPDPCHDPITVHYCQYMLC*ASHFNDHSHPTHILYVHFTPKRRDQH 25
           +QP  P R  SHP LP P H P + H   +      H   H+H  H  Y H  P  +  H
Sbjct: 590 LQPGTPTRS-SHPQLPHPHHYPPSPHSHPHHQA-GHHGLPHAH--HFAYAHGHPHPQQHH 645

Query: 24  ATFQFH 7
             +  H
Sbjct: 646 PHYYPH 651