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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914055
Clone id YMU001_000039_D03
Library
Length 379
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000039_D03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AGTGGTGGTGGTGGTTGGTTGGTAGGTGATGGGGTCATTGAGTTGTCTAAGTGCCTCATT
CTCATACCATTCCTTTGAGAGGATAGTAAGACCAATGTTTTTGTAGGCGGGTTTAATAAC
AATGGAGTTATCGTGTGAGAGAGATTTGAGGGCTATATGTACAAACTTTGGAGGTTTAGA
GAAGGAAGTATTGTATCTATCCAATTTGTGTTTAAGATGCAGTTTGTTACGTTCTGTGAT
AATTTCTAGAGAGGGATTCTCTTTGGGTGGTTTCCAATGGGGGTTGGGTAATTTAAATGG
AGAAAAGGAGGAGTGCTTCTATGGTTTTGAAGAAATCTTTAAGTTGTAAGCTTCTTCCTA
AGGTTTCATGTGCTTCTAG
■■Homology search results ■■ -
sp_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914055|Adiantum capillus-veneris mRNA, clone:
YMU001_000039_D03.
         (379 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done

 ***** No hits found ******
tr_hit_id Q28FM0
Definition tr|Q28FM0|Q28FM0_XENTR Novel protein OS=Xenopus tropicalis
Align length 46
Score (bit) 36.2
E-value 0.82
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914055|Adiantum capillus-veneris mRNA, clone:
YMU001_000039_D03.
         (379 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q28FM0|Q28FM0_XENTR Novel protein OS=Xenopus tropicalis GN=TN...    36   0.82 
tr|Q8IC23|Q8IC23_PLAF7 Putative uncharacterized protein PF07_001...    35   1.4  
tr|Q4YCI6|Q4YCI6_PLABE ATP-dependent Clp protease proteolytic su...    34   4.1  
tr|Q5D215|Q5D215_PHACH Putative reverse transcriptase OS=Phanero...    34   4.1  
tr|A4HGP0|A4HGP0_LEIBR Putative uncharacterized protein OS=Leish...    34   4.1  
tr|Q6ML03|Q6ML03_BDEBA Putative uncharacterized protein OS=Bdell...    33   9.1  
tr|Q7RTK8|Q7RTK8_SCHMA Reverse transcriptase OS=Schistosoma mans...    33   9.1  
tr|B0Y7N0|B0Y7N0_ASPFC Ubiquitin-protein ligase E3 component (UB...    33   9.1  
tr|A1DMN9|A1DMN9_NEOFI Ubiquitin-protein ligase E3 component (UB...    33   9.1  

>tr|Q28FM0|Q28FM0_XENTR Novel protein OS=Xenopus tropicalis
           GN=TNeu107n03.1-001 PE=2 SV=1
          Length = 170

 Score = 36.2 bits (82), Expect = 0.82
 Identities = 19/46 (41%), Positives = 29/46 (63%)
 Frame = -2

Query: 153 ALKSLSHDNSIVIKPAYKNIGLTILSKEWYENEALRQLNDPITYQP 16
           AL+ L +D+ IVI+ A K   + +L++  Y  EA RQL+D  T+ P
Sbjct: 28  ALEKLKNDHDIVIRRADKGGQIVVLNRTDYVTEAYRQLSDTETFIP 73


>tr|Q8IC23|Q8IC23_PLAF7 Putative uncharacterized protein PF07_0018
           OS=Plasmodium falciparum (isolate 3D7) GN=PF07_0018 PE=4
           SV=1
          Length = 1337

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = -2

Query: 246 EIITERNKLHLKHKLDRYNTSFSKPPKFVHIALKSLSHDN--SIVIKPAYKNI 94
           +++ ER +++ + K+ +Y    SK   F+HI  K  S+DN  +      Y NI
Sbjct: 579 KLVNERRRIYAELKIQKYTKHISKNKNFIHICTKDPSYDNKKNFFFNNTYDNI 631


>tr|Q4YCI6|Q4YCI6_PLABE ATP-dependent Clp protease proteolytic
           subunit OS=Plasmodium berghei GN=PB000565.01.0 PE=3 SV=1
          Length = 239

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
 Frame = -2

Query: 255 PSLEIITERNKLHLKHKLDRYNTSFSKPPKFVHIALKSLSHDNSIVI--KPAYKNIGLTI 82
           PS  II + N + LK+KL  YN  +SK     +I++ SL     I+    P Y +I   I
Sbjct: 25  PSNFIIAQTNNIRLKNKLRYYNNEYSKQ----NISIPSLLLSKRIIFLSSPIYPHISEQI 80

Query: 81  LSKEWY-ENEALRQ 43
           +S+  Y E E+ R+
Sbjct: 81  ISQLLYLEYESKRK 94


>tr|Q5D215|Q5D215_PHACH Putative reverse transcriptase
           OS=Phanerochaete chrysosporium GN=pol PE=4 SV=1
          Length = 1094

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -2

Query: 150 LKSLSHDNSIVIKPAYKNIGLTILSKEWYENEALRQLNDPITYQ 19
           LK     N  ++ P+ KN+G+ IL  +W  ++     NDP  Y+
Sbjct: 408 LKDYLSANKYIVSPSDKNLGVCILQADWATDQTRTLWNDPSNYR 451


>tr|A4HGP0|A4HGP0_LEIBR Putative uncharacterized protein
           OS=Leishmania braziliensis GN=LbrM28_V2.2040 PE=4 SV=1
          Length = 742

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = -3

Query: 323 HRSTPPFLHLNYPTPIGNHPKRIPL*KLS-QNVTNCILNTNWIDTILPSLNLQS 165
           H S PP +H N   P   HP   P   LS  ++  CI++++W + +LP  +++S
Sbjct: 190 HSSLPPEMHTN-SAPQSTHPHSEPAHVLSPSSLPPCIVHSDWSEELLPLASVRS 242


>tr|Q6ML03|Q6ML03_BDEBA Putative uncharacterized protein
           OS=Bdellovibrio bacteriovorus GN=Bd2223 PE=4 SV=1
          Length = 529

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 20/63 (31%), Positives = 30/63 (47%)
 Frame = -2

Query: 234 ERNKLHLKHKLDRYNTSFSKPPKFVHIALKSLSHDNSIVIKPAYKNIGLTILSKEWYENE 55
           E+ + +LK +   YN  FS+PP    I+ K L  D   V+    K I  T L K +   +
Sbjct: 352 EQIQQYLKDRCKTYNLEFSEPPDLYMISRKRLVTDEVKVLSTWVKEIFFTPLDKTYIFKK 411

Query: 54  ALR 46
            L+
Sbjct: 412 LLK 414


>tr|Q7RTK8|Q7RTK8_SCHMA Reverse transcriptase OS=Schistosoma mansoni
           PE=4 SV=1
          Length = 789

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 20/46 (43%), Positives = 23/46 (50%)
 Frame = -2

Query: 153 ALKSLSHDNSIVIKPAYKNIGLTILSKEWYENEALRQLNDPITYQP 16
           ALK L     IVI PA K     I+ KE Y  +A   L D  TY+P
Sbjct: 155 ALKKLRTGKDIVIVPADKGRTTVIMDKEEYIKKAEEILEDKSTYKP 200


>tr|B0Y7N0|B0Y7N0_ASPFC Ubiquitin-protein ligase E3 component (UBR1),
            putative OS=Aspergillus fumigatus (strain CEA10 / CBS
            144.89 / FGSC A1163) GN=AFUB_074380 PE=4 SV=1
          Length = 2150

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 20/80 (25%), Positives = 39/80 (48%)
 Frame = -2

Query: 267  PKENPSLEIITERNKLHLKHKLDRYNTSFSKPPKFVHIALKSLSHDNSIVIKPAYKNIGL 88
            P E+P  E++    +L    + +  +++F+ PP+ +H     L H +S+     Y +I  
Sbjct: 1625 PDESPMFELLQIYKRLKKTLRTNHIHSTFNHPPETIHSVNDDLVHTDSLFSSFGY-SIAA 1683

Query: 87   TILSKEWYENEALRQLNDPI 28
              +++   E+EA   L D I
Sbjct: 1684 VEIAQRGVESEAGSTLLDKI 1703


>tr|A1DMN9|A1DMN9_NEOFI Ubiquitin-protein ligase E3 component (UBR1),
            putative OS=Neosartorya fischeri (strain ATCC 1020 / DSM
            3700 / NRRL 181) GN=NFIA_054060 PE=4 SV=1
          Length = 2158

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 20/80 (25%), Positives = 39/80 (48%)
 Frame = -2

Query: 267  PKENPSLEIITERNKLHLKHKLDRYNTSFSKPPKFVHIALKSLSHDNSIVIKPAYKNIGL 88
            P E+P  E++    +L    + +  +++F+ PP+ +H     L H +S+     Y +I  
Sbjct: 1633 PDESPMFELLQIYKRLKKTLRTNHIHSTFNHPPETIHSGNDDLVHTDSLFSSFGY-SIAA 1691

Query: 87   TILSKEWYENEALRQLNDPI 28
              +++   E+EA   L D I
Sbjct: 1692 VEIAQRGVESEAGSTLLDKI 1711